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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OKMD] human gut metagenome; human gut
HIT:
144 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182852839
OKMD01000038
[OKMD] human gut metagenome; human gut
2
78
+
Met
CAT
[ENA]
¢þ
>WENV182852922
OKMD01001666
[OKMD] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV182852938
OKMD01002162
[OKMD] human gut metagenome; human gut
63
138
+
Phe
GAA
[ENA]
¢þ
>WENV182852929
OKMD01001835
[OKMD] human gut metagenome; human gut
67
141
+
Ala
TGC
[ENA]
¢þ
>WENV182852928
OKMD01001726
[OKMD] human gut metagenome; human gut
73
147
+
Ile
GAT
[ENA]
¢þ
>WENV182852891
OKMD01000375
[OKMD] human gut metagenome; human gut
83
158
+
Thr
GGT
[ENA]
¢þ
>WENV182852906
OKMD01001125
[OKMD] human gut metagenome; human gut
85
178
+
Ser
GCT
[ENA]
¢þ
>WENV182852899
OKMD01000596
[OKMD] human gut metagenome; human gut
89
13
-
Met
CAT
[ENA]
¢þ
>WENV182852844
OKMD01000047
[OKMD] human gut metagenome; human gut
106
181
+
Trp
CCA
[ENA]
¢þ
>WENV182852840
OKMD01000038
[OKMD] human gut metagenome; human gut
120
194
+
Gln
CTG
[ENA]
¢þ
>WENV182852884
OKMD01000234
[OKMD] human gut metagenome; human gut
121
38
-
Leu
CAA
[ENA]
¢þ
>WENV182852917
OKMD01001238
[OKMD] human gut metagenome; human gut
132
217
+
Leu
GAG
[ENA]
¢þ
>WENV182852916
OKMD01001200
[OKMD] human gut metagenome; human gut
136
62
-
Gln
TTG
[ENA]
¢þ
>WENV182852939
OKMD01002162
[OKMD] human gut metagenome; human gut
141
216
+
Asn
GTT
[ENA]
¢þ
>WENV182852923
OKMD01001666
[OKMD] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV182852930
OKMD01001835
[OKMD] human gut metagenome; human gut
163
238
+
Met
CAT
[ENA]
¢þ
>WENV182852918
OKMD01001249
[OKMD] human gut metagenome; human gut
165
241
+
Val
GAC
[ENA]
¢þ
>WENV182852934
OKMD01001949
[OKMD] human gut metagenome; human gut
169
244
+
Ala
TGC
[ENA]
¢þ
>WENV182852898
OKMD01000575
[OKMD] human gut metagenome; human gut
185
111
-
Ile2
CAT
[ENA]
¢þ
>WENV182852907
OKMD01001125
[OKMD] human gut metagenome; human gut
203
279
+
Arg
ACG
[ENA]
¢þ
>WENV182852919
OKMD01001306
[OKMD] human gut metagenome; human gut
204
280
+
Ile
GAT
[ENA]
¢þ
>WENV182852915
OKMD01001200
[OKMD] human gut metagenome; human gut
217
142
-
His
GTG
[ENA]
¢þ
>WENV182852841
OKMD01000038
[OKMD] human gut metagenome; human gut
229
303
+
Gln
CTG
[ENA]
¢þ
>WENV182852935
OKMD01002145
[OKMD] human gut metagenome; human gut
235
311
+
Ile2
CAT
[ENA]
¢þ
>WENV182852924
OKMD01001666
[OKMD] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV182852931
OKMD01001835
[OKMD] human gut metagenome; human gut
257
332
+
Ile2
CAT
[ENA]
¢þ
>WENV182852897
OKMD01000466
[OKMD] human gut metagenome; human gut
267
191
-
Ile2
CAT
[ENA]
¢þ
>WENV182852904
OKMD01001014
[OKMD] human gut metagenome; human gut
294
368
+
Lys
CTT
[ENA]
¢þ
>WENV182852914
OKMD01001200
[OKMD] human gut metagenome; human gut
298
222
-
Arg
TCT
[ENA]
¢þ
>WENV182852925
OKMD01001666
[OKMD] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV182852936
OKMD01002145
[OKMD] human gut metagenome; human gut
317
392
+
Ala
TGC
[ENA]
¢þ
>WENV182852908
OKMD01001125
[OKMD] human gut metagenome; human gut
333
409
+
Arg
ACG
[ENA]
¢þ
>WENV182852833
OKMD01000024
[OKMD] human gut metagenome; human gut
348
273
-
Thr
GGT
[ENA]
¢þ
>WENV182852932
OKMD01001835
[OKMD] human gut metagenome; human gut
365
454
+
Ser
TGA
[ENA]
¢þ
>WENV182852902
OKMD01000935
[OKMD] human gut metagenome; human gut
384
459
+
Trp
CCA
[ENA]
¢þ
>WENV182852937
OKMD01002145
[OKMD] human gut metagenome; human gut
398
474
+
Ile
GAT
[ENA]
¢þ
>WENV182852878
OKMD01000176
[OKMD] human gut metagenome; human gut
400
325
-
Lys
TTT
[ENA]
¢þ
>WENV182852926
OKMD01001666
[OKMD] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV182852920
OKMD01001306
[OKMD] human gut metagenome; human gut
411
486
+
Ala
TGC
[ENA]
¢þ
>WENV182852832
OKMD01000024
[OKMD] human gut metagenome; human gut
429
355
-
Gly
TCC
[ENA]
¢þ
>WENV182852913
OKMD01001200
[OKMD] human gut metagenome; human gut
451
378
-
Gly
TCC
[ENA]
¢þ
>WENV182852877
OKMD01000176
[OKMD] human gut metagenome; human gut
479
405
-
Gln
TTG
[ENA]
¢þ
>WENV182852933
OKMD01001835
[OKMD] human gut metagenome; human gut
487
562
+
fMet
CAT
[ENA]
¢þ
>WENV182852927
OKMD01001666
[OKMD] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV182852912
OKMD01001200
[OKMD] human gut metagenome; human gut
529
455
-
Gly
GCC
[ENA]
¢þ
>WENV182852855
OKMD01000075
[OKMD] human gut metagenome; human gut
557
647
+
Ser
GCT
[ENA]
¢þ
>WENV182852903
OKMD01000935
[OKMD] human gut metagenome; human gut
572
648
+
Arg
ACG
[ENA]
¢þ
>WENV182852876
OKMD01000176
[OKMD] human gut metagenome; human gut
579
504
-
His
GTG
[ENA]
¢þ
>WENV182852921
OKMD01001430
[OKMD] human gut metagenome; human gut
587
512
-
Ala
GGC
[ENA]
¢þ
>WENV182852831
OKMD01000024
[OKMD] human gut metagenome; human gut
630
546
-
Tyr
GTA
[ENA]
¢þ
>WENV182852911
OKMD01001200
[OKMD] human gut metagenome; human gut
636
553
-
Leu
TAG
[ENA]
¢þ
>WENV182852830
OKMD01000024
[OKMD] human gut metagenome; human gut
714
639
-
Thr
TGT
[ENA]
¢þ
>WENV182852910
OKMD01001200
[OKMD] human gut metagenome; human gut
722
647
-
Lys
TTT
[ENA]
¢þ
>WENV182852901
OKMD01000683
[OKMD] human gut metagenome; human gut
867
939
+
Asn
GTT
[ENA]
¢þ
>WENV182852852
OKMD01000072
[OKMD] human gut metagenome; human gut
882
807
-
Phe
GAA
[ENA]
¢þ
>WENV182852909
OKMD01001158
[OKMD] human gut metagenome; human gut
909
985
+
Pro
TGG
[ENA]
¢þ
>WENV182852905
OKMD01001027
[OKMD] human gut metagenome; human gut
916
991
+
Arg
TCT
[ENA]
¢þ
>WENV182852900
OKMD01000675
[OKMD] human gut metagenome; human gut
1145
1233
+
Ser
TGA
[ENA]
¢þ
>WENV182852851
OKMD01000061
[OKMD] human gut metagenome; human gut
1803
1728
-
Thr
CGT
[ENA]
¢þ
>WENV182852888
OKMD01000374
[OKMD] human gut metagenome; human gut
1820
1896
+
Pro
TGG
[ENA]
¢þ
>WENV182852854
OKMD01000073
[OKMD] human gut metagenome; human gut
1872
1783
-
Ser
CGA
[ENA]
¢þ
>WENV182852889
OKMD01000374
[OKMD] human gut metagenome; human gut
1907
1980
+
Gly
TCC
[ENA]
¢þ
>WENV182852892
OKMD01000409
[OKMD] human gut metagenome; human gut
2048
2123
+
Gly
GCC
[ENA]
¢þ
>WENV182852890
OKMD01000374
[OKMD] human gut metagenome; human gut
2086
2162
+
Arg
TCT
[ENA]
¢þ
>WENV182852883
OKMD01000225
[OKMD] human gut metagenome; human gut
2106
2016
-
Ser
GGA
[ENA]
¢þ
>WENV182852893
OKMD01000409
[OKMD] human gut metagenome; human gut
2131
2204
+
Cys
GCA
[ENA]
¢þ
>WENV182852894
OKMD01000409
[OKMD] human gut metagenome; human gut
2233
2319
+
Leu
TAA
[ENA]
¢þ
>WENV182852895
OKMD01000409
[OKMD] human gut metagenome; human gut
2338
2413
+
Lys
TTT
[ENA]
¢þ
>WENV182852896
OKMD01000409
[OKMD] human gut metagenome; human gut
2444
2519
+
Lys
CTT
[ENA]
¢þ
>WENV182852882
OKMD01000195
[OKMD] human gut metagenome; human gut
2592
2504
-
Leu
TAA
[ENA]
¢þ
>WENV182852881
OKMD01000195
[OKMD] human gut metagenome; human gut
2681
2607
-
Cys
GCA
[ENA]
¢þ
>WENV182852810
OKMD01000007
[OKMD] human gut metagenome; human gut
2700
2613
-
Ser
TGA
[ENA]
¢þ
>WENV182852880
OKMD01000195
[OKMD] human gut metagenome; human gut
2765
2691
-
Gly
GCC
[ENA]
¢þ
>WENV182852887
OKMD01000349
[OKMD] human gut metagenome; human gut
3530
3605
+
Lys
CTT
[ENA]
¢þ
>WENV182852879
OKMD01000189
[OKMD] human gut metagenome; human gut
3846
3922
+
Arg
CCT
[ENA]
¢þ
>WENV182852885
OKMD01000265
[OKMD] human gut metagenome; human gut
4058
4144
+
Leu
GAG
[ENA]
¢þ
>WENV182852886
OKMD01000308
[OKMD] human gut metagenome; human gut
4834
4759
-
Ala
TGC
[ENA]
¢þ
>WENV182852857
OKMD01000087
[OKMD] human gut metagenome; human gut
7753
7837
+
Leu
TAG
[ENA]
¢þ
>WENV182852875
OKMD01000166
[OKMD] human gut metagenome; human gut
8221
8296
+
Ile2
CAT
[ENA]
¢þ
>WENV182852829
OKMD01000024
[OKMD] human gut metagenome; human gut
8429
8353
-
Pro
TGG
[ENA]
¢þ
>WENV182852818
OKMD01000010
[OKMD] human gut metagenome; human gut
8686
8602
-
Leu
CAA
[ENA]
¢þ
>WENV182852809
OKMD01000007
[OKMD] human gut metagenome; human gut
9134
9047
-
Ser
TGA
[ENA]
¢þ
>WENV182852870
OKMD01000161
[OKMD] human gut metagenome; human gut
12545
12620
+
Thr
TGT
[ENA]
¢þ
>WENV182852871
OKMD01000161
[OKMD] human gut metagenome; human gut
12631
12715
+
Tyr
GTA
[ENA]
¢þ
>WENV182852872
OKMD01000161
[OKMD] human gut metagenome; human gut
12721
12796
+
fMet
CAT
[ENA]
¢þ
>WENV182852873
OKMD01000161
[OKMD] human gut metagenome; human gut
12828
12903
+
Thr
GGT
[ENA]
¢þ
>WENV182852874
OKMD01000161
[OKMD] human gut metagenome; human gut
12909
12985
+
Met
CAT
[ENA]
¢þ
>WENV182852869
OKMD01000126
[OKMD] human gut metagenome; human gut
17495
17569
+
Arg
CCG
[ENA]
¢þ
>WENV182852868
OKMD01000122
[OKMD] human gut metagenome; human gut
17682
17597
-
Leu
CAA
[ENA]
¢þ
>WENV182852867
OKMD01000122
[OKMD] human gut metagenome; human gut
17765
17695
-
Cys
GCA
[ENA]
¢þ
>WENV182852866
OKMD01000122
[OKMD] human gut metagenome; human gut
17863
17790
-
Gln
TTG
[ENA]
¢þ
>WENV182852865
OKMD01000122
[OKMD] human gut metagenome; human gut
17949
17876
-
His
GTG
[ENA]
¢þ
>WENV182852864
OKMD01000122
[OKMD] human gut metagenome; human gut
18059
17986
-
Trp
CCA
[ENA]
¢þ
>WENV182852863
OKMD01000122
[OKMD] human gut metagenome; human gut
18145
18063
-
Tyr
GTA
[ENA]
¢þ
>WENV182852862
OKMD01000122
[OKMD] human gut metagenome; human gut
18222
18150
-
Phe
GAA
[ENA]
¢þ
>WENV182852861
OKMD01000122
[OKMD] human gut metagenome; human gut
18343
18268
-
Asp
GTC
[ENA]
¢þ
>WENV182852860
OKMD01000122
[OKMD] human gut metagenome; human gut
18427
18353
-
Val
TAC
[ENA]
¢þ
>WENV182852859
OKMD01000122
[OKMD] human gut metagenome; human gut
18526
18453
-
Glu
TTC
[ENA]
¢þ
>WENV182852858
OKMD01000122
[OKMD] human gut metagenome; human gut
18632
18542
-
Ser
GGA
[ENA]
¢þ
>WENV182852856
OKMD01000084
[OKMD] human gut metagenome; human gut
19317
19407
+
Ser
CGA
[ENA]
¢þ
>WENV182852837
OKMD01000026
[OKMD] human gut metagenome; human gut
23840
23765
-
Asn
GTT
[ENA]
¢þ
>WENV182852811
OKMD01000008
[OKMD] human gut metagenome; human gut
24385
24461
+
Pro
GGG
[ENA]
¢þ
>WENV182852843
OKMD01000043
[OKMD] human gut metagenome; human gut
24580
24508
-
Thr
GGT
[ENA]
¢þ
>WENV182852834
OKMD01000026
[OKMD] human gut metagenome; human gut
25589
25664
+
Asn
GTT
[ENA]
¢þ
>WENV182852817
OKMD01000009
[OKMD] human gut metagenome; human gut
28034
27958
-
Val
GAC
[ENA]
¢þ
>WENV182852816
OKMD01000009
[OKMD] human gut metagenome; human gut
28115
28039
-
Val
GAC
[ENA]
¢þ
>WENV182852850
OKMD01000061
[OKMD] human gut metagenome; human gut
31307
31231
-
Asp
GTC
[ENA]
¢þ
>WENV182852849
OKMD01000058
[OKMD] human gut metagenome; human gut
32690
32617
-
Gln
TTG
[ENA]
¢þ
>WENV182852848
OKMD01000058
[OKMD] human gut metagenome; human gut
32780
32698
-
Tyr
GTA
[ENA]
¢þ
>WENV182852838
OKMD01000027
[OKMD] human gut metagenome; human gut
32863
32790
-
Arg
CCG
[ENA]
¢þ
>WENV182852853
OKMD01000073
[OKMD] human gut metagenome; human gut
33449
33374
-
Asn
GTT
[ENA]
¢þ
>WENV182852845
OKMD01000052
[OKMD] human gut metagenome; human gut
36164
36239
+
Gly
GCC
[ENA]
¢þ
>WENV182852846
OKMD01000052
[OKMD] human gut metagenome; human gut
36291
36364
+
Cys
GCA
[ENA]
¢þ
>WENV182852847
OKMD01000052
[OKMD] human gut metagenome; human gut
36376
36462
+
Leu
TAA
[ENA]
¢þ
>WENV182852824
OKMD01000021
[OKMD] human gut metagenome; human gut
37696
37621
-
Arg
CCT
[ENA]
¢þ
>WENV182852842
OKMD01000041
[OKMD] human gut metagenome; human gut
38811
38739
-
Thr
CGT
[ENA]
¢þ
>WENV182852836
OKMD01000026
[OKMD] human gut metagenome; human gut
39422
39347
-
Asn
GTT
[ENA]
¢þ
>WENV182852798
OKMD01000002
[OKMD] human gut metagenome; human gut
41741
41654
-
Ser
GGA
[ENA]
¢þ
>WENV182852797
OKMD01000002
[OKMD] human gut metagenome; human gut
44670
44583
-
Ser
GGA
[ENA]
¢þ
>WENV182852799
OKMD01000003
[OKMD] human gut metagenome; human gut
45412
45485
+
Gly
CCC
[ENA]
¢þ
>WENV182852835
OKMD01000026
[OKMD] human gut metagenome; human gut
50366
50291
-
Asn
GTT
[ENA]
¢þ
>WENV182852808
OKMD01000007
[OKMD] human gut metagenome; human gut
55192
55116
-
Arg
TCT
[ENA]
¢þ
>WENV182852822
OKMD01000019
[OKMD] human gut metagenome; human gut
56593
56518
-
Phe
GAA
[ENA]
¢þ
>WENV182852828
OKMD01000024
[OKMD] human gut metagenome; human gut
65373
65297
-
Pro
TGG
[ENA]
¢þ
>WENV182852827
OKMD01000024
[OKMD] human gut metagenome; human gut
65504
65418
-
Leu
CAG
[ENA]
¢þ
>WENV182852826
OKMD01000024
[OKMD] human gut metagenome; human gut
65601
65526
-
His
GTG
[ENA]
¢þ
>WENV182852825
OKMD01000024
[OKMD] human gut metagenome; human gut
65745
65669
-
Arg
CCG
[ENA]
¢þ
>WENV182852819
OKMD01000011
[OKMD] human gut metagenome; human gut
71327
71233
-
SeC
TCA
[ENA]
¢þ
>WENV182852815
OKMD01000009
[OKMD] human gut metagenome; human gut
75869
75943
+
Thr
TGT
[ENA]
¢þ
>WENV182852823
OKMD01000021
[OKMD] human gut metagenome; human gut
87034
87109
+
Arg
TCT
[ENA]
¢þ
>WENV182852821
OKMD01000016
[OKMD] human gut metagenome; human gut
91707
91631
-
Arg
TCT
[ENA]
¢þ
>WENV182852806
OKMD01000006
[OKMD] human gut metagenome; human gut
106403
106489
+
Leu
GAG
[ENA]
¢þ
>WENV182852807
OKMD01000006
[OKMD] human gut metagenome; human gut
108309
108385
+
fMet
CAT
[ENA]
¢þ
>WENV182852805
OKMD01000004
[OKMD] human gut metagenome; human gut
108526
108610
+
Tyr
GTA
[ENA]
¢þ
>WENV182852804
OKMD01000003
[OKMD] human gut metagenome; human gut
118907
118831
-
fMet
CAT
[ENA]
¢þ
>WENV182852803
OKMD01000003
[OKMD] human gut metagenome; human gut
119028
118952
-
fMet
CAT
[ENA]
¢þ
>WENV182852820
OKMD01000012
[OKMD] human gut metagenome; human gut
129064
128989
-
Lys
TTT
[ENA]
¢þ
>WENV182852812
OKMD01000008
[OKMD] human gut metagenome; human gut
145526
145598
+
Arg
CCT
[ENA]
¢þ
>WENV182852814
OKMD01000008
[OKMD] human gut metagenome; human gut
163821
163746
-
Ala
GGC
[ENA]
¢þ
>WENV182852813
OKMD01000008
[OKMD] human gut metagenome; human gut
163938
163863
-
Ala
GGC
[ENA]
¢þ
>WENV182852796
OKMD01000001
[OKMD] human gut metagenome; human gut
188963
189049
+
Leu
CAG
[ENA]
¢þ
>WENV182852800
OKMD01000003
[OKMD] human gut metagenome; human gut
228268
228360
+
Ser
GCT
[ENA]
¢þ
>WENV182852801
OKMD01000003
[OKMD] human gut metagenome; human gut
228365
228441
+
Arg
ACG
[ENA]
¢þ
>WENV182852802
OKMD01000003
[OKMD] human gut metagenome; human gut
228506
228582
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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