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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKNI] human gut metagenome; human gut
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182856201
OKNI01000449
[OKNI] human gut metagenome; human gut
109
26
-
Leu
TAG
[ENA]
¢þ
>WENV182856197
OKNI01000437
[OKNI] human gut metagenome; human gut
126
50
-
Val
GAC
[ENA]
¢þ
>WENV182856215
OKNI01001558
[OKNI] human gut metagenome; human gut
166
241
+
Glu
TTC
[ENA]
¢þ
>WENV182856207
OKNI01000532
[OKNI] human gut metagenome; human gut
171
96
-
Ala
GGC
[ENA]
¢þ
>WENV182856200
OKNI01000449
[OKNI] human gut metagenome; human gut
198
124
-
Lys
TTT
[ENA]
¢þ
>WENV182856199
OKNI01000449
[OKNI] human gut metagenome; human gut
277
203
-
Val
TAC
[ENA]
¢þ
>WENV182856218
OKNI01002086
[OKNI] human gut metagenome; human gut
310
236
-
Gln
CTG
[ENA]
¢þ
>WENV182856202
OKNI01000483
[OKNI] human gut metagenome; human gut
312
225
-
Ser
GGA
[ENA]
¢þ
>WENV182856196
OKNI01000384
[OKNI] human gut metagenome; human gut
353
437
+
Leu
CAA
[ENA]
¢þ
>WENV182856216
OKNI01001647
[OKNI] human gut metagenome; human gut
359
447
+
Ser
TGA
[ENA]
¢þ
>WENV182856213
OKNI01000663
[OKNI] human gut metagenome; human gut
360
285
-
Thr
GGT
[ENA]
¢þ
>WENV182856217
OKNI01002086
[OKNI] human gut metagenome; human gut
421
347
-
Gln
CTG
[ENA]
¢þ
>WENV182856214
OKNI01001331
[OKNI] human gut metagenome; human gut
431
344
-
Ser
TGA
[ENA]
¢þ
>WENV182856212
OKNI01000663
[OKNI] human gut metagenome; human gut
441
367
-
Gly
TCC
[ENA]
¢þ
>WENV182856211
OKNI01000663
[OKNI] human gut metagenome; human gut
643
559
-
Tyr
GTA
[ENA]
¢þ
>WENV182856210
OKNI01000663
[OKNI] human gut metagenome; human gut
727
652
-
Thr
TGT
[ENA]
¢þ
>WENV182856190
OKNI01000254
[OKNI] human gut metagenome; human gut
1495
1571
+
Arg
TCT
[ENA]
¢þ
>WENV182856194
OKNI01000339
[OKNI] human gut metagenome; human gut
1652
1577
-
Lys
TTT
[ENA]
¢þ
>WENV182856189
OKNI01000242
[OKNI] human gut metagenome; human gut
1693
1766
+
Gly
CCC
[ENA]
¢þ
>WENV182856193
OKNI01000330
[OKNI] human gut metagenome; human gut
1758
1833
+
Asn
GTT
[ENA]
¢þ
>WENV182856187
OKNI01000198
[OKNI] human gut metagenome; human gut
1851
1776
-
Phe
GAA
[ENA]
¢þ
>WENV182856209
OKNI01000616
[OKNI] human gut metagenome; human gut
2199
2124
-
Ala
TGC
[ENA]
¢þ
>WENV182856208
OKNI01000616
[OKNI] human gut metagenome; human gut
2318
2242
-
Ile
GAT
[ENA]
¢þ
>WENV182856203
OKNI01000523
[OKNI] human gut metagenome; human gut
2712
2788
+
Met
CAT
[ENA]
¢þ
>WENV182856175
OKNI01000031
[OKNI] human gut metagenome; human gut
2789
2865
+
Asp
GTC
[ENA]
¢þ
>WENV182856204
OKNI01000523
[OKNI] human gut metagenome; human gut
2797
2881
+
Leu
TAG
[ENA]
¢þ
>WENV182856206
OKNI01000532
[OKNI] human gut metagenome; human gut
2864
2939
+
Val
TAC
[ENA]
¢þ
>WENV182856205
OKNI01000523
[OKNI] human gut metagenome; human gut
2905
2979
+
Gln
TTG
[ENA]
¢þ
>WENV182856188
OKNI01000214
[OKNI] human gut metagenome; human gut
3579
3503
-
Pro
GGG
[ENA]
¢þ
>WENV182856198
OKNI01000449
[OKNI] human gut metagenome; human gut
3664
3592
-
Ala
TGC
[ENA]
¢þ
>WENV182856185
OKNI01000125
[OKNI] human gut metagenome; human gut
4164
4251
+
Ser
TGA
[ENA]
¢þ
>WENV182856172
OKNI01000002
[OKNI] human gut metagenome; human gut
4590
4674
+
Tyr
GTA
[ENA]
¢þ
>WENV182856195
OKNI01000356
[OKNI] human gut metagenome; human gut
4599
4685
+
Leu
CAG
[ENA]
¢þ
>WENV182856182
OKNI01000091
[OKNI] human gut metagenome; human gut
4850
4756
-
SeC
TCA
[ENA]
¢þ
>WENV182856186
OKNI01000146
[OKNI] human gut metagenome; human gut
5257
5332
+
Thr
CGT
[ENA]
¢þ
>WENV182856191
OKNI01000263
[OKNI] human gut metagenome; human gut
6034
6120
+
Leu
GAG
[ENA]
¢þ
>WENV182856192
OKNI01000267
[OKNI] human gut metagenome; human gut
6079
6004
-
Trp
CCA
[ENA]
¢þ
>WENV182856176
OKNI01000046
[OKNI] human gut metagenome; human gut
8862
8937
+
Asn
GTT
[ENA]
¢þ
>WENV182856183
OKNI01000111
[OKNI] human gut metagenome; human gut
9332
9407
+
Ile2
CAT
[ENA]
¢þ
>WENV182856184
OKNI01000119
[OKNI] human gut metagenome; human gut
9924
10000
+
Pro
TGG
[ENA]
¢þ
>WENV182856181
OKNI01000078
[OKNI] human gut metagenome; human gut
12346
12418
+
Arg
CCT
[ENA]
¢þ
>WENV182856177
OKNI01000060
[OKNI] human gut metagenome; human gut
12570
12646
+
Arg
CCG
[ENA]
¢þ
>WENV182856178
OKNI01000060
[OKNI] human gut metagenome; human gut
12714
12789
+
His
GTG
[ENA]
¢þ
>WENV182856179
OKNI01000060
[OKNI] human gut metagenome; human gut
12811
12896
+
Leu
CAG
[ENA]
¢þ
>WENV182856180
OKNI01000067
[OKNI] human gut metagenome; human gut
13004
13079
+
Gly
GCC
[ENA]
¢þ
>WENV182856173
OKNI01000013
[OKNI] human gut metagenome; human gut
20605
20697
+
Ser
GCT
[ENA]
¢þ
>WENV182856174
OKNI01000013
[OKNI] human gut metagenome; human gut
20702
20778
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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