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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OKNM] human gut metagenome; human gut
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182856388
OKNM01000119
[OKNM] human gut metagenome; human gut
26
101
+
Arg
CCT
[ENA]
¢þ
>WENV182856417
OKNM01001474
[OKNM] human gut metagenome; human gut
46
120
+
Lys
CTT
[ENA]
¢þ
>WENV182856401
OKNM01000384
[OKNM] human gut metagenome; human gut
56
129
+
Trp
CCA
[ENA]
¢þ
>WENV182856389
OKNM01000200
[OKNM] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV182856410
OKNM01000878
[OKNM] human gut metagenome; human gut
62
134
+
Thr
CGT
[ENA]
¢þ
>WENV182856396
OKNM01000222
[OKNM] human gut metagenome; human gut
64
139
+
Asp
GTC
[ENA]
¢þ
>WENV182856411
OKNM01000972
[OKNM] human gut metagenome; human gut
148
76
-
Ala
TGC
[ENA]
¢þ
>WENV182856390
OKNM01000200
[OKNM] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV182856402
OKNM01000384
[OKNM] human gut metagenome; human gut
166
239
+
His
GTG
[ENA]
¢þ
>WENV182856397
OKNM01000222
[OKNM] human gut metagenome; human gut
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV182856391
OKNM01000200
[OKNM] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV182856403
OKNM01000384
[OKNM] human gut metagenome; human gut
252
325
+
Gln
TTG
[ENA]
¢þ
>WENV182856398
OKNM01000222
[OKNM] human gut metagenome; human gut
262
344
+
Tyr
GTA
[ENA]
¢þ
>WENV182856392
OKNM01000200
[OKNM] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV182856415
OKNM01001262
[OKNM] human gut metagenome; human gut
318
404
+
Lys
TTT
[ENA]
¢þ
>WENV182856404
OKNM01000384
[OKNM] human gut metagenome; human gut
350
420
+
Cys
GCA
[ENA]
¢þ
>WENV182856399
OKNM01000222
[OKNM] human gut metagenome; human gut
352
425
+
Gln
TTG
[ENA]
¢þ
>WENV182856393
OKNM01000200
[OKNM] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV182856405
OKNM01000384
[OKNM] human gut metagenome; human gut
433
518
+
Leu
CAA
[ENA]
¢þ
>WENV182856407
OKNM01000543
[OKNM] human gut metagenome; human gut
466
538
+
Thr
GGT
[ENA]
¢þ
>WENV182856394
OKNM01000200
[OKNM] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV182856412
OKNM01001025
[OKNM] human gut metagenome; human gut
517
604
+
Ser
TGA
[ENA]
¢þ
>WENV182856395
OKNM01000200
[OKNM] human gut metagenome; human gut
589
662
+
Pro
TGG
[ENA]
¢þ
>WENV182856416
OKNM01001365
[OKNM] human gut metagenome; human gut
594
669
+
Gly
GCC
[ENA]
¢þ
>WENV182856414
OKNM01001095
[OKNM] human gut metagenome; human gut
694
619
-
Lys
TTT
[ENA]
¢þ
>WENV182856413
OKNM01001095
[OKNM] human gut metagenome; human gut
772
697
-
Val
TAC
[ENA]
¢þ
>WENV182856409
OKNM01000797
[OKNM] human gut metagenome; human gut
1003
930
-
Glu
TTC
[ENA]
¢þ
>WENV182856400
OKNM01000352
[OKNM] human gut metagenome; human gut
1093
1168
+
Arg
TCT
[ENA]
¢þ
>WENV182856408
OKNM01000797
[OKNM] human gut metagenome; human gut
1106
1017
-
Ser
GCT
[ENA]
¢þ
>WENV182856406
OKNM01000455
[OKNM] human gut metagenome; human gut
1689
1615
-
Arg
CCT
[ENA]
¢þ
>WENV182856387
OKNM01000030
[OKNM] human gut metagenome; human gut
4459
4384
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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