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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKNN] human gut metagenome; human gut
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182856426
OKNN01000024
[OKNN] human gut metagenome; human gut
80
4
-
Arg
ACG
[ENA]
¢þ
>WENV182856464
OKNN01001632
[OKNN] human gut metagenome; human gut
97
172
+
Glu
TTC
[ENA]
¢þ
>WENV182856432
OKNN01000038
[OKNN] human gut metagenome; human gut
98
174
+
Asp
GTC
[ENA]
¢þ
>WENV182856425
OKNN01000024
[OKNN] human gut metagenome; human gut
176
84
-
Ser
GCT
[ENA]
¢þ
>WENV182856433
OKNN01000038
[OKNN] human gut metagenome; human gut
183
258
+
Trp
CCA
[ENA]
¢þ
>WENV182856449
OKNN01000130
[OKNN] human gut metagenome; human gut
851
775
-
Arg
TCT
[ENA]
¢þ
>WENV182856463
OKNN01000300
[OKNN] human gut metagenome; human gut
1035
1124
+
Ser
CGA
[ENA]
¢þ
>WENV182856456
OKNN01000166
[OKNN] human gut metagenome; human gut
1064
990
-
Arg
CCT
[ENA]
¢þ
>WENV182856455
OKNN01000165
[OKNN] human gut metagenome; human gut
1377
1301
-
Asp
GTC
[ENA]
¢þ
>WENV182856444
OKNN01000071
[OKNN] human gut metagenome; human gut
1524
1440
-
Leu
CAA
[ENA]
¢þ
>WENV182856459
OKNN01000252
[OKNN] human gut metagenome; human gut
3514
3589
+
Thr
TGT
[ENA]
¢þ
>WENV182856460
OKNN01000252
[OKNN] human gut metagenome; human gut
3598
3682
+
Tyr
GTA
[ENA]
¢þ
>WENV182856461
OKNN01000252
[OKNN] human gut metagenome; human gut
3799
3873
+
Gly
TCC
[ENA]
¢þ
>WENV182856450
OKNN01000137
[OKNN] human gut metagenome; human gut
3814
3889
+
Ile2
CAT
[ENA]
¢þ
>WENV182856462
OKNN01000252
[OKNN] human gut metagenome; human gut
3880
3955
+
Thr
GGT
[ENA]
¢þ
>WENV182856451
OKNN01000137
[OKNN] human gut metagenome; human gut
3897
3973
+
Arg
TCG
[ENA]
¢þ
>WENV182856453
OKNN01000151
[OKNN] human gut metagenome; human gut
3956
3872
-
Tyr
GTA
[ENA]
¢þ
>WENV182856452
OKNN01000137
[OKNN] human gut metagenome; human gut
3987
4063
+
Arg
TCT
[ENA]
¢þ
>WENV182856418
OKNN01000002
[OKNN] human gut metagenome; human gut
6885
6809
-
Pro
GGG
[ENA]
¢þ
>WENV182856446
OKNN01000078
[OKNN] human gut metagenome; human gut
8001
7925
-
Val
GAC
[ENA]
¢þ
>WENV182856445
OKNN01000078
[OKNN] human gut metagenome; human gut
8082
8006
-
Val
GAC
[ENA]
¢þ
>WENV182856458
OKNN01000185
[OKNN] human gut metagenome; human gut
8243
8167
-
Pro
TGG
[ENA]
¢þ
>WENV182856443
OKNN01000066
[OKNN] human gut metagenome; human gut
8660
8736
+
fMet
CAT
[ENA]
¢þ
>WENV182856457
OKNN01000172
[OKNN] human gut metagenome; human gut
9369
9444
+
Lys
TTT
[ENA]
¢þ
>WENV182856454
OKNN01000165
[OKNN] human gut metagenome; human gut
9602
9526
-
Asp
GTC
[ENA]
¢þ
>WENV182856440
OKNN01000044
[OKNN] human gut metagenome; human gut
12257
12171
-
Leu
TAA
[ENA]
¢þ
>WENV182856439
OKNN01000044
[OKNN] human gut metagenome; human gut
12343
12270
-
Cys
GCA
[ENA]
¢þ
>WENV182856438
OKNN01000044
[OKNN] human gut metagenome; human gut
12472
12397
-
Gly
GCC
[ENA]
¢þ
>WENV182856448
OKNN01000126
[OKNN] human gut metagenome; human gut
12730
12656
-
Gln
CTG
[ENA]
¢þ
>WENV182856447
OKNN01000095
[OKNN] human gut metagenome; human gut
14072
14147
+
Thr
CGT
[ENA]
¢þ
>WENV182856419
OKNN01000004
[OKNN] human gut metagenome; human gut
15674
15749
+
Ile2
CAT
[ENA]
¢þ
>WENV182856423
OKNN01000016
[OKNN] human gut metagenome; human gut
16429
16342
-
Ser
TGA
[ENA]
¢þ
>WENV182856441
OKNN01000061
[OKNN] human gut metagenome; human gut
21977
21902
-
Ala
GGC
[ENA]
¢þ
>WENV182856442
OKNN01000062
[OKNN] human gut metagenome; human gut
24293
24207
-
Leu
CAG
[ENA]
¢þ
>WENV182856437
OKNN01000043
[OKNN] human gut metagenome; human gut
28903
28978
+
Gly
GCC
[ENA]
¢þ
>WENV182856427
OKNN01000028
[OKNN] human gut metagenome; human gut
29767
29853
+
Leu
GAG
[ENA]
¢þ
>WENV182856431
OKNN01000037
[OKNN] human gut metagenome; human gut
30743
30668
-
Asn
GTT
[ENA]
¢þ
>WENV182856420
OKNN01000005
[OKNN] human gut metagenome; human gut
31461
31555
+
SeC
TCA
[ENA]
¢þ
>WENV182856429
OKNN01000037
[OKNN] human gut metagenome; human gut
32492
32567
+
Asn
GTT
[ENA]
¢þ
>WENV182856428
OKNN01000028
[OKNN] human gut metagenome; human gut
33634
33710
+
fMet
CAT
[ENA]
¢þ
>WENV182856434
OKNN01000038
[OKNN] human gut metagenome; human gut
34727
34803
+
Arg
CCG
[ENA]
¢þ
>WENV182856435
OKNN01000038
[OKNN] human gut metagenome; human gut
34862
34937
+
His
GTG
[ENA]
¢þ
>WENV182856430
OKNN01000037
[OKNN] human gut metagenome; human gut
34901
34976
+
Asn
GTT
[ENA]
¢þ
>WENV182856436
OKNN01000038
[OKNN] human gut metagenome; human gut
34958
35044
+
Leu
CAG
[ENA]
¢þ
>WENV182856422
OKNN01000014
[OKNN] human gut metagenome; human gut
40833
40757
-
Pro
CGG
[ENA]
¢þ
>WENV182856424
OKNN01000022
[OKNN] human gut metagenome; human gut
46019
45943
-
Arg
ACG
[ENA]
¢þ
>WENV182856421
OKNN01000006
[OKNN] human gut metagenome; human gut
56550
56477
-
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK