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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKNT] human gut metagenome; human gut
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182857049
OKNT01001020
[OKNT] human gut metagenome; human gut
1
85
+
Tyr
GTA
[ENA]
¢þ
>WENV182857046
OKNT01000672
[OKNT] human gut metagenome; human gut
31
107
+
Arg
TCT
[ENA]
¢þ
>WENV182857055
OKNT01001256
[OKNT] human gut metagenome; human gut
67
140
+
Glu
TTC
[ENA]
¢þ
>WENV182857056
OKNT01001256
[OKNT] human gut metagenome; human gut
153
242
+
Ser
TGA
[ENA]
¢þ
>WENV182857048
OKNT01000945
[OKNT] human gut metagenome; human gut
172
97
-
Ala
GGC
[ENA]
¢þ
>WENV182857032
OKNT01000177
[OKNT] human gut metagenome; human gut
181
108
-
Arg
ACG
[ENA]
¢þ
>WENV182857050
OKNT01001020
[OKNT] human gut metagenome; human gut
201
275
+
Gly
TCC
[ENA]
¢þ
>WENV182857057
OKNT01001256
[OKNT] human gut metagenome; human gut
255
328
+
fMet
CAT
[ENA]
¢þ
>WENV182857053
OKNT01001179
[OKNT] human gut metagenome; human gut
256
340
+
Leu
CAA
[ENA]
¢þ
>WENV182857031
OKNT01000177
[OKNT] human gut metagenome; human gut
276
191
-
Leu
TAA
[ENA]
¢þ
>WENV182857051
OKNT01001020
[OKNT] human gut metagenome; human gut
281
356
+
Thr
GGT
[ENA]
¢þ
>WENV182857058
OKNT01001256
[OKNT] human gut metagenome; human gut
335
407
+
Phe
GAA
[ENA]
¢þ
>WENV182857030
OKNT01000177
[OKNT] human gut metagenome; human gut
355
284
-
Gly
GCC
[ENA]
¢þ
>WENV182857067
OKNT01001609
[OKNT] human gut metagenome; human gut
371
286
-
Leu
CAA
[ENA]
¢þ
>WENV182857059
OKNT01001256
[OKNT] human gut metagenome; human gut
423
495
+
Gly
TCC
[ENA]
¢þ
>WENV182857029
OKNT01000177
[OKNT] human gut metagenome; human gut
447
375
-
Thr
TGT
[ENA]
¢þ
>WENV182857066
OKNT01001609
[OKNT] human gut metagenome; human gut
452
379
-
Gln
TTG
[ENA]
¢þ
>WENV182857060
OKNT01001256
[OKNT] human gut metagenome; human gut
533
608
+
Ile
GAT
[ENA]
¢þ
>WENV182857065
OKNT01001609
[OKNT] human gut metagenome; human gut
538
464
-
His
GTG
[ENA]
¢þ
>WENV182857028
OKNT01000177
[OKNT] human gut metagenome; human gut
539
458
-
Leu
TAG
[ENA]
¢þ
>WENV182857042
OKNT01000645
[OKNT] human gut metagenome; human gut
617
693
+
Met
CAT
[ENA]
¢þ
>WENV182857061
OKNT01001256
[OKNT] human gut metagenome; human gut
618
707
+
Ser
GCT
[ENA]
¢þ
>WENV182857027
OKNT01000177
[OKNT] human gut metagenome; human gut
621
549
-
Lys
TTT
[ENA]
¢þ
>WENV182857064
OKNT01001609
[OKNT] human gut metagenome; human gut
623
551
-
Trp
CCA
[ENA]
¢þ
>WENV182857062
OKNT01001304
[OKNT] human gut metagenome; human gut
703
792
+
Ser
CGA
[ENA]
¢þ
>WENV182857063
OKNT01001609
[OKNT] human gut metagenome; human gut
710
630
-
Tyr
GTA
[ENA]
¢þ
>WENV182857054
OKNT01001209
[OKNT] human gut metagenome; human gut
718
644
-
Arg
CCT
[ENA]
¢þ
>WENV182857026
OKNT01000177
[OKNT] human gut metagenome; human gut
721
649
-
Asp
GTC
[ENA]
¢þ
>WENV182857043
OKNT01000645
[OKNT] human gut metagenome; human gut
741
815
+
Gln
CTG
[ENA]
¢þ
>WENV182857025
OKNT01000177
[OKNT] human gut metagenome; human gut
820
746
-
Val
TAC
[ENA]
¢þ
>WENV182857039
OKNT01000435
[OKNT] human gut metagenome; human gut
921
846
-
Phe
GAA
[ENA]
¢þ
>WENV182857037
OKNT01000260
[OKNT] human gut metagenome; human gut
1062
1137
+
Val
TAC
[ENA]
¢þ
>WENV182857023
OKNT01000133
[OKNT] human gut metagenome; human gut
1109
1182
+
Gly
CCC
[ENA]
¢þ
>WENV182857038
OKNT01000260
[OKNT] human gut metagenome; human gut
1142
1217
+
Lys
TTT
[ENA]
¢þ
>WENV182857052
OKNT01001130
[OKNT] human gut metagenome; human gut
1297
1372
+
Thr
TGT
[ENA]
¢þ
>WENV182857047
OKNT01000804
[OKNT] human gut metagenome; human gut
1440
1365
-
Asn
GTT
[ENA]
¢þ
>WENV182857019
OKNT01000020
[OKNT] human gut metagenome; human gut
1591
1505
-
Leu
GAG
[ENA]
¢þ
>WENV182857034
OKNT01000194
[OKNT] human gut metagenome; human gut
1991
2066
+
Ile2
CAT
[ENA]
¢þ
>WENV182857018
OKNT01000018
[OKNT] human gut metagenome; human gut
2031
2106
+
Gly
GCC
[ENA]
¢þ
>WENV182857033
OKNT01000184
[OKNT] human gut metagenome; human gut
2207
2132
-
Glu
TTC
[ENA]
¢þ
>WENV182857044
OKNT01000660
[OKNT] human gut metagenome; human gut
2358
2434
+
Arg
CCG
[ENA]
¢þ
>WENV182857045
OKNT01000660
[OKNT] human gut metagenome; human gut
2490
2565
+
His
GTG
[ENA]
¢þ
>WENV182857041
OKNT01000613
[OKNT] human gut metagenome; human gut
2640
2726
+
Leu
CAG
[ENA]
¢þ
>WENV182857035
OKNT01000197
[OKNT] human gut metagenome; human gut
2720
2633
-
Ser
TGA
[ENA]
¢þ
>WENV182857040
OKNT01000538
[OKNT] human gut metagenome; human gut
2763
2838
+
Thr
CGT
[ENA]
¢þ
>WENV182857036
OKNT01000246
[OKNT] human gut metagenome; human gut
2880
2804
-
fMet
CAT
[ENA]
¢þ
>WENV182857015
OKNT01000003
[OKNT] human gut metagenome; human gut
3176
3100
-
Pro
GGG
[ENA]
¢þ
>WENV182857024
OKNT01000177
[OKNT] human gut metagenome; human gut
4447
4373
-
Ala
TGC
[ENA]
¢þ
>WENV182857020
OKNT01000022
[OKNT] human gut metagenome; human gut
4477
4571
+
SeC
TCA
[ENA]
¢þ
>WENV182857022
OKNT01000024
[OKNT] human gut metagenome; human gut
9335
9259
-
Arg
ACG
[ENA]
¢þ
>WENV182857021
OKNT01000024
[OKNT] human gut metagenome; human gut
9432
9340
-
Ser
GCT
[ENA]
¢þ
>WENV182857017
OKNT01000007
[OKNT] human gut metagenome; human gut
14476
14401
-
Trp
CCA
[ENA]
¢þ
>WENV182857016
OKNT01000007
[OKNT] human gut metagenome; human gut
14606
14530
-
Asp
GTC
[ENA]
¢þ
>WENV182857014
OKNT01000001
[OKNT] human gut metagenome; human gut
18152
18228
+
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK