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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKOM] human gut metagenome; human gut
HIT:
111 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182859391
OKOM01000643
[OKOM] human gut metagenome; human gut
6
100
+
SeC
TCA
[ENA]
¢þ
>WENV182859345
OKOM01000073
[OKOM] human gut metagenome; human gut
67
141
+
Val
TAC
[ENA]
¢þ
>WENV182859375
OKOM01000178
[OKOM] human gut metagenome; human gut
77
147
+
Cys
GCA
[ENA]
¢þ
>WENV182859393
OKOM01000725
[OKOM] human gut metagenome; human gut
79
4
-
Val
TAC
[ENA]
¢þ
>WENV182859388
OKOM01000386
[OKOM] human gut metagenome; human gut
101
176
+
Trp
CCA
[ENA]
¢þ
>WENV182859398
OKOM01001912
[OKOM] human gut metagenome; human gut
110
35
-
Thr
TGT
[ENA]
¢þ
>WENV182859417
OKOM01003485
[OKOM] human gut metagenome; human gut
132
56
-
Asp
GTC
[ENA]
¢þ
>WENV182859346
OKOM01000073
[OKOM] human gut metagenome; human gut
146
220
+
Lys
TTT
[ENA]
¢þ
>WENV182859370
OKOM01000150
[OKOM] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182859410
OKOM01003431
[OKOM] human gut metagenome; human gut
159
86
-
Val
CAC
[ENA]
¢þ
>WENV182859376
OKOM01000178
[OKOM] human gut metagenome; human gut
160
245
+
Leu
CAA
[ENA]
¢þ
>WENV182859392
OKOM01000682
[OKOM] human gut metagenome; human gut
166
241
+
Pro
GGG
[ENA]
¢þ
>WENV182859401
OKOM01002164
[OKOM] human gut metagenome; human gut
188
263
+
His
GTG
[ENA]
¢þ
>WENV182859420
OKOM01005289
[OKOM] human gut metagenome; human gut
206
132
-
Gln
CTG
[ENA]
¢þ
>WENV182859347
OKOM01000073
[OKOM] human gut metagenome; human gut
235
318
+
Leu
TAG
[ENA]
¢þ
>WENV182859416
OKOM01003485
[OKOM] human gut metagenome; human gut
245
170
-
fMet
CAT
[ENA]
¢þ
>WENV182859409
OKOM01003431
[OKOM] human gut metagenome; human gut
279
207
-
Val
GAC
[ENA]
¢þ
>WENV182859402
OKOM01002263
[OKOM] human gut metagenome; human gut
307
392
+
Ser
TGA
[ENA]
¢þ
>WENV182859419
OKOM01005289
[OKOM] human gut metagenome; human gut
318
245
-
Glu
CTC
[ENA]
¢þ
>WENV182859411
OKOM01003467
[OKOM] human gut metagenome; human gut
322
236
-
Ser
CGA
[ENA]
¢þ
>WENV182859348
OKOM01000073
[OKOM] human gut metagenome; human gut
324
399
+
Thr
TGT
[ENA]
¢þ
>WENV182859415
OKOM01003485
[OKOM] human gut metagenome; human gut
367
278
-
Ser
TGA
[ENA]
¢þ
>WENV182859408
OKOM01003431
[OKOM] human gut metagenome; human gut
391
320
-
Cys
GCA
[ENA]
¢þ
>WENV182859349
OKOM01000073
[OKOM] human gut metagenome; human gut
404
475
+
Gly
GCC
[ENA]
¢þ
>WENV182859404
OKOM01002670
[OKOM] human gut metagenome; human gut
425
496
+
Gln
TTG
[ENA]
¢þ
>WENV182859418
OKOM01004589
[OKOM] human gut metagenome; human gut
431
356
-
Trp
CCA
[ENA]
¢þ
>WENV182859414
OKOM01003485
[OKOM] human gut metagenome; human gut
475
400
-
Ile2
CAT
[ENA]
¢þ
>WENV182859406
OKOM01003266
[OKOM] human gut metagenome; human gut
486
410
-
Leu
CAA
[ENA]
¢þ
>WENV182859407
OKOM01003431
[OKOM] human gut metagenome; human gut
491
418
-
Gly
GCC
[ENA]
¢þ
>WENV182859350
OKOM01000073
[OKOM] human gut metagenome; human gut
491
576
+
Leu
TAA
[ENA]
¢þ
>WENV182859399
OKOM01002125
[OKOM] human gut metagenome; human gut
561
635
+
Ile
GAT
[ENA]
¢þ
>WENV182859395
OKOM01001047
[OKOM] human gut metagenome; human gut
565
638
+
Gly
CCC
[ENA]
¢þ
>WENV182859405
OKOM01003234
[OKOM] human gut metagenome; human gut
568
641
+
Arg
CCT
[ENA]
¢þ
>WENV182859413
OKOM01003485
[OKOM] human gut metagenome; human gut
569
494
-
Met
CAT
[ENA]
¢þ
>WENV182859351
OKOM01000073
[OKOM] human gut metagenome; human gut
591
664
+
Arg
ACG
[ENA]
¢þ
>WENV182859412
OKOM01003485
[OKOM] human gut metagenome; human gut
664
590
-
Ala
TGC
[ENA]
¢þ
>WENV182859400
OKOM01002125
[OKOM] human gut metagenome; human gut
677
750
+
Ala
TGC
[ENA]
¢þ
>WENV182859403
OKOM01002279
[OKOM] human gut metagenome; human gut
683
610
-
Lys
TTT
[ENA]
¢þ
>WENV182859352
OKOM01000073
[OKOM] human gut metagenome; human gut
754
827
+
Pro
TGG
[ENA]
¢þ
>WENV182859396
OKOM01001468
[OKOM] human gut metagenome; human gut
845
919
+
Ile2
CAT
[ENA]
¢þ
>WENV182859397
OKOM01001618
[OKOM] human gut metagenome; human gut
906
982
+
Arg
TCT
[ENA]
¢þ
>WENV182859394
OKOM01000883
[OKOM] human gut metagenome; human gut
1368
1274
-
SeC
TCA
[ENA]
¢þ
>WENV182859355
OKOM01000089
[OKOM] human gut metagenome; human gut
1712
1637
-
Phe
GAA
[ENA]
¢þ
>WENV182859380
OKOM01000274
[OKOM] human gut metagenome; human gut
1776
1851
+
Asn
GTT
[ENA]
¢þ
>WENV182859334
OKOM01000053
[OKOM] human gut metagenome; human gut
2762
2837
+
Ala
GGC
[ENA]
¢þ
>WENV182859335
OKOM01000053
[OKOM] human gut metagenome; human gut
2879
2954
+
Ala
GGC
[ENA]
¢þ
>WENV182859389
OKOM01000449
[OKOM] human gut metagenome; human gut
3056
3131
+
Arg
TCT
[ENA]
¢þ
>WENV182859316
OKOM01000007
[OKOM] human gut metagenome; human gut
3299
3225
-
Lys
CTT
[ENA]
¢þ
>WENV182859344
OKOM01000066
[OKOM] human gut metagenome; human gut
3583
3508
-
Asn
GTT
[ENA]
¢þ
>WENV182859390
OKOM01000521
[OKOM] human gut metagenome; human gut
4054
3981
-
Gly
CCC
[ENA]
¢þ
>WENV182859381
OKOM01000278
[OKOM] human gut metagenome; human gut
4153
4229
+
Arg
CCG
[ENA]
¢þ
>WENV182859382
OKOM01000278
[OKOM] human gut metagenome; human gut
4297
4372
+
His
GTG
[ENA]
¢þ
>WENV182859383
OKOM01000278
[OKOM] human gut metagenome; human gut
4394
4480
+
Leu
CAG
[ENA]
¢þ
>WENV182859384
OKOM01000278
[OKOM] human gut metagenome; human gut
4525
4601
+
Pro
TGG
[ENA]
¢þ
>WENV182859343
OKOM01000066
[OKOM] human gut metagenome; human gut
4575
4664
+
Ser
CGA
[ENA]
¢þ
>WENV182859387
OKOM01000325
[OKOM] human gut metagenome; human gut
5099
5012
-
Ser
TGA
[ENA]
¢þ
>WENV182859324
OKOM01000027
[OKOM] human gut metagenome; human gut
6551
6478
-
Gln
TTG
[ENA]
¢þ
>WENV182859323
OKOM01000027
[OKOM] human gut metagenome; human gut
6641
6559
-
Tyr
GTA
[ENA]
¢þ
>WENV182859325
OKOM01000038
[OKOM] human gut metagenome; human gut
8162
8086
-
Pro
CGG
[ENA]
¢þ
>WENV182859379
OKOM01000240
[OKOM] human gut metagenome; human gut
8494
8570
+
Pro
TGG
[ENA]
¢þ
>WENV182859378
OKOM01000234
[OKOM] human gut metagenome; human gut
9031
8955
-
fMet
CAT
[ENA]
¢þ
>WENV182859327
OKOM01000047
[OKOM] human gut metagenome; human gut
9245
9158
-
Ser
TGA
[ENA]
¢þ
>WENV182859353
OKOM01000078
[OKOM] human gut metagenome; human gut
10222
10296
+
Asn
GTT
[ENA]
¢þ
>WENV182859354
OKOM01000078
[OKOM] human gut metagenome; human gut
10300
10375
+
Arg
TCT
[ENA]
¢þ
>WENV182859386
OKOM01000318
[OKOM] human gut metagenome; human gut
10464
10540
+
Arg
TCT
[ENA]
¢þ
>WENV182859317
OKOM01000017
[OKOM] human gut metagenome; human gut
10811
10897
+
Leu
GAG
[ENA]
¢þ
>WENV182859377
OKOM01000234
[OKOM] human gut metagenome; human gut
10939
10853
-
Leu
GAG
[ENA]
¢þ
>WENV182859385
OKOM01000296
[OKOM] human gut metagenome; human gut
11308
11234
-
Gln
CTG
[ENA]
¢þ
>WENV182859363
OKOM01000120
[OKOM] human gut metagenome; human gut
11444
11358
-
Leu
CAG
[ENA]
¢þ
>WENV182859362
OKOM01000120
[OKOM] human gut metagenome; human gut
11564
11478
-
Leu
CAG
[ENA]
¢þ
>WENV182859361
OKOM01000120
[OKOM] human gut metagenome; human gut
11679
11593
-
Leu
CAG
[ENA]
¢þ
>WENV182859331
OKOM01000049
[OKOM] human gut metagenome; human gut
12347
12258
-
Ser
CGA
[ENA]
¢þ
>WENV182859359
OKOM01000093
[OKOM] human gut metagenome; human gut
12447
12361
-
Leu
TAA
[ENA]
¢þ
>WENV182859358
OKOM01000093
[OKOM] human gut metagenome; human gut
12532
12459
-
Cys
GCA
[ENA]
¢þ
>WENV182859357
OKOM01000093
[OKOM] human gut metagenome; human gut
12662
12587
-
Gly
GCC
[ENA]
¢þ
>WENV182859371
OKOM01000166
[OKOM] human gut metagenome; human gut
13096
13171
+
Phe
GAA
[ENA]
¢þ
>WENV182859318
OKOM01000017
[OKOM] human gut metagenome; human gut
14680
14756
+
fMet
CAT
[ENA]
¢þ
>WENV182859367
OKOM01000141
[OKOM] human gut metagenome; human gut
15186
15262
+
Val
GAC
[ENA]
¢þ
>WENV182859333
OKOM01000051
[OKOM] human gut metagenome; human gut
15256
15181
-
Phe
GAA
[ENA]
¢þ
>WENV182859368
OKOM01000141
[OKOM] human gut metagenome; human gut
15267
15343
+
Val
GAC
[ENA]
¢þ
>WENV182859326
OKOM01000047
[OKOM] human gut metagenome; human gut
15680
15593
-
Ser
TGA
[ENA]
¢þ
>WENV182859342
OKOM01000063
[OKOM] human gut metagenome; human gut
15894
15819
-
Ile2
CAT
[ENA]
¢þ
>WENV182859372
OKOM01000175
[OKOM] human gut metagenome; human gut
15964
16039
+
Asn
GTT
[ENA]
¢þ
>WENV182859366
OKOM01000127
[OKOM] human gut metagenome; human gut
16227
16152
-
Asn
GTT
[ENA]
¢þ
>WENV182859337
OKOM01000054
[OKOM] human gut metagenome; human gut
17610
17685
+
Ile2
CAT
[ENA]
¢þ
>WENV182859338
OKOM01000054
[OKOM] human gut metagenome; human gut
17764
17839
+
Thr
TGT
[ENA]
¢þ
>WENV182859339
OKOM01000054
[OKOM] human gut metagenome; human gut
17841
17917
+
Arg
CCG
[ENA]
¢þ
>WENV182859340
OKOM01000054
[OKOM] human gut metagenome; human gut
17919
17993
+
Gly
TCC
[ENA]
¢þ
>WENV182859322
OKOM01000027
[OKOM] human gut metagenome; human gut
17972
17886
-
Leu
GAG
[ENA]
¢þ
>WENV182859364
OKOM01000127
[OKOM] human gut metagenome; human gut
17976
18051
+
Asn
GTT
[ENA]
¢þ
>WENV182859373
OKOM01000175
[OKOM] human gut metagenome; human gut
18424
18499
+
Asn
GTT
[ENA]
¢þ
>WENV182859374
OKOM01000176
[OKOM] human gut metagenome; human gut
18624
18549
-
Trp
CCA
[ENA]
¢þ
>WENV182859336
OKOM01000053
[OKOM] human gut metagenome; human gut
19759
19687
-
Arg
CCT
[ENA]
¢þ
>WENV182859365
OKOM01000127
[OKOM] human gut metagenome; human gut
20385
20460
+
Asn
GTT
[ENA]
¢þ
>WENV182859369
OKOM01000149
[OKOM] human gut metagenome; human gut
21292
21367
+
Thr
CGT
[ENA]
¢þ
>WENV182859341
OKOM01000055
[OKOM] human gut metagenome; human gut
24726
24650
-
Arg
TCT
[ENA]
¢þ
>WENV182859332
OKOM01000050
[OKOM] human gut metagenome; human gut
24822
24896
+
Arg
CCT
[ENA]
¢þ
>WENV182859360
OKOM01000104
[OKOM] human gut metagenome; human gut
26159
26246
+
Ser
GGA
[ENA]
¢þ
>WENV182859356
OKOM01000091
[OKOM] human gut metagenome; human gut
28585
28509
-
Asp
GTC
[ENA]
¢þ
>WENV182859328
OKOM01000048
[OKOM] human gut metagenome; human gut
37459
37535
+
Val
GAC
[ENA]
¢þ
>WENV182859329
OKOM01000048
[OKOM] human gut metagenome; human gut
37540
37616
+
Val
GAC
[ENA]
¢þ
>WENV182859330
OKOM01000049
[OKOM] human gut metagenome; human gut
46582
46507
-
Asn
GTT
[ENA]
¢þ
>WENV182859320
OKOM01000019
[OKOM] human gut metagenome; human gut
59312
59385
+
Arg
CCG
[ENA]
¢þ
>WENV182859319
OKOM01000018
[OKOM] human gut metagenome; human gut
71965
72041
+
Arg
TCT
[ENA]
¢þ
>WENV182859321
OKOM01000021
[OKOM] human gut metagenome; human gut
90216
90310
+
SeC
TCA
[ENA]
¢þ
>WENV182859315
OKOM01000005
[OKOM] human gut metagenome; human gut
116787
116716
-
Trp
CCA
[ENA]
¢þ
>WENV182859312
OKOM01000003
[OKOM] human gut metagenome; human gut
132123
132048
-
Arg
TCT
[ENA]
¢þ
>WENV182859310
OKOM01000002
[OKOM] human gut metagenome; human gut
132534
132606
+
Thr
CGT
[ENA]
¢þ
>WENV182859313
OKOM01000004
[OKOM] human gut metagenome; human gut
167474
167550
+
Pro
GGG
[ENA]
¢þ
>WENV182859314
OKOM01000005
[OKOM] human gut metagenome; human gut
170787
170859
+
Thr
GGT
[ENA]
¢þ
>WENV182859311
OKOM01000003
[OKOM] human gut metagenome; human gut
181462
181537
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK