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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKOY] human gut metagenome; human gut
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182860775
OKOY01000526
[OKOY] human gut metagenome; human gut
25
98
+
Pro
TGG
[ENA]
¢þ
>WENV182860780
OKOY01000605
[OKOY] human gut metagenome; human gut
36
111
+
Lys
TTT
[ENA]
¢þ
>WENV182860770
OKOY01000280
[OKOY] human gut metagenome; human gut
66
137
+
Gln
TTG
[ENA]
¢þ
>WENV182860776
OKOY01000526
[OKOY] human gut metagenome; human gut
115
190
+
Ala
TGC
[ENA]
¢þ
>WENV182860781
OKOY01000605
[OKOY] human gut metagenome; human gut
120
202
+
Leu
TAG
[ENA]
¢þ
>WENV182860771
OKOY01000280
[OKOY] human gut metagenome; human gut
143
216
+
Cys
GCA
[ENA]
¢þ
>WENV182860782
OKOY01000605
[OKOY] human gut metagenome; human gut
206
280
+
Gly
GCC
[ENA]
¢þ
>WENV182860777
OKOY01000526
[OKOY] human gut metagenome; human gut
215
289
+
Met
CAT
[ENA]
¢þ
>WENV182860783
OKOY01000605
[OKOY] human gut metagenome; human gut
292
380
+
Leu
TAA
[ENA]
¢þ
>WENV182860778
OKOY01000526
[OKOY] human gut metagenome; human gut
316
389
+
Ile2
CAT
[ENA]
¢þ
>WENV182860784
OKOY01000605
[OKOY] human gut metagenome; human gut
393
467
+
Arg
ACG
[ENA]
¢þ
>WENV182860779
OKOY01000526
[OKOY] human gut metagenome; human gut
398
489
+
Ser
TGA
[ENA]
¢þ
>WENV182860769
OKOY01000221
[OKOY] human gut metagenome; human gut
428
354
-
Phe
GAA
[ENA]
¢þ
>WENV182860772
OKOY01000280
[OKOY] human gut metagenome; human gut
430
513
+
Leu
CAA
[ENA]
¢þ
>WENV182860774
OKOY01000476
[OKOY] human gut metagenome; human gut
432
518
+
Leu
GAG
[ENA]
¢þ
>WENV182860773
OKOY01000339
[OKOY] human gut metagenome; human gut
525
601
+
Ile
GAT
[ENA]
¢þ
>WENV182860768
OKOY01000152
[OKOY] human gut metagenome; human gut
744
674
-
Asn
GTT
[ENA]
¢þ
>WENV182860738
OKOY01000014
[OKOY] human gut metagenome; human gut
864
935
+
Arg
CCG
[ENA]
¢þ
>WENV182860759
OKOY01000152
[OKOY] human gut metagenome; human gut
1116
1187
+
Ala
TGC
[ENA]
¢þ
>WENV182860760
OKOY01000152
[OKOY] human gut metagenome; human gut
1229
1302
+
Pro
TGG
[ENA]
¢þ
>WENV182860761
OKOY01000152
[OKOY] human gut metagenome; human gut
1698
1781
+
Leu
TAG
[ENA]
¢þ
>WENV182860762
OKOY01000152
[OKOY] human gut metagenome; human gut
1900
1971
+
Asp
GTC
[ENA]
¢þ
>WENV182860767
OKOY01000152
[OKOY] human gut metagenome; human gut
2170
2097
-
Gly
TCC
[ENA]
¢þ
>WENV182860748
OKOY01000122
[OKOY] human gut metagenome; human gut
2298
2371
+
Thr
TGT
[ENA]
¢þ
>WENV182860763
OKOY01000152
[OKOY] human gut metagenome; human gut
2511
2585
+
Arg
TCG
[ENA]
¢þ
>WENV182860749
OKOY01000122
[OKOY] human gut metagenome; human gut
2642
2716
+
Gln
TTG
[ENA]
¢þ
>WENV182860764
OKOY01000152
[OKOY] human gut metagenome; human gut
2658
2731
+
His
GTG
[ENA]
¢þ
>WENV182860765
OKOY01000152
[OKOY] human gut metagenome; human gut
2901
2971
+
Val
TAC
[ENA]
¢þ
>WENV182860766
OKOY01000152
[OKOY] human gut metagenome; human gut
3088
3171
+
Ser
GCT
[ENA]
¢þ
>WENV182860758
OKOY01000125
[OKOY] human gut metagenome; human gut
3204
3121
-
Leu
TAA
[ENA]
¢þ
>WENV182860757
OKOY01000125
[OKOY] human gut metagenome; human gut
3318
3248
-
Met
CAT
[ENA]
¢þ
>WENV182860756
OKOY01000125
[OKOY] human gut metagenome; human gut
4032
3962
-
Met
CAT
[ENA]
¢þ
>WENV182860755
OKOY01000125
[OKOY] human gut metagenome; human gut
4568
4494
-
Cys
GCA
[ENA]
¢þ
>WENV182860750
OKOY01000125
[OKOY] human gut metagenome; human gut
4832
4904
+
Lys
TTT
[ENA]
¢þ
>WENV182860751
OKOY01000125
[OKOY] human gut metagenome; human gut
5005
5077
+
Trp
CCA
[ENA]
¢þ
>WENV182860752
OKOY01000125
[OKOY] human gut metagenome; human gut
5175
5247
+
Ile
GAT
[ENA]
¢þ
>WENV182860753
OKOY01000125
[OKOY] human gut metagenome; human gut
5357
5428
+
Ser
TGA
[ENA]
¢þ
>WENV182860754
OKOY01000125
[OKOY] human gut metagenome; human gut
5537
5608
+
Phe
GAA
[ENA]
¢þ
>WENV182860747
OKOY01000042
[OKOY] human gut metagenome; human gut
10375
10467
+
Ser
TGA
[ENA]
¢þ
>WENV182860737
OKOY01000009
[OKOY] human gut metagenome; human gut
18068
17978
-
Ser
GCT
[ENA]
¢þ
>WENV182860736
OKOY01000009
[OKOY] human gut metagenome; human gut
18145
18071
-
Asn
GTT
[ENA]
¢þ
>WENV182860739
OKOY01000032
[OKOY] human gut metagenome; human gut
18182
18255
+
fMet
CAT
[ENA]
¢þ
>WENV182860740
OKOY01000032
[OKOY] human gut metagenome; human gut
18270
18345
+
Asp
GTC
[ENA]
¢þ
>WENV182860741
OKOY01000032
[OKOY] human gut metagenome; human gut
18355
18429
+
Phe
GAA
[ENA]
¢þ
>WENV182860742
OKOY01000032
[OKOY] human gut metagenome; human gut
18442
18517
+
His
GTG
[ENA]
¢þ
>WENV182860743
OKOY01000032
[OKOY] human gut metagenome; human gut
18535
18608
+
Gly
TCC
[ENA]
¢þ
>WENV182860744
OKOY01000032
[OKOY] human gut metagenome; human gut
18618
18692
+
Asn
GTT
[ENA]
¢þ
>WENV182860745
OKOY01000032
[OKOY] human gut metagenome; human gut
18693
18766
+
Glu
TTC
[ENA]
¢þ
>WENV182860746
OKOY01000032
[OKOY] human gut metagenome; human gut
18817
18907
+
Ser
GGA
[ENA]
¢þ
>WENV182860735
OKOY01000007
[OKOY] human gut metagenome; human gut
19461
19387
-
Arg
TCT
[ENA]
¢þ
>WENV182860733
OKOY01000006
[OKOY] human gut metagenome; human gut
33700
33774
+
Glu
TTC
[ENA]
¢þ
>WENV182860734
OKOY01000006
[OKOY] human gut metagenome; human gut
33780
33852
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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