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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKPM] human gut metagenome; human gut
HIT:
80 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182862455
OKPM01003312
[OKPM] human gut metagenome; human gut
1
74
+
Glu
TTC
[ENA]
¢þ
>WENV182862450
OKPM01002819
[OKPM] human gut metagenome; human gut
52
122
+
Cys
GCA
[ENA]
¢þ
>WENV182862466
OKPM01004202
[OKPM] human gut metagenome; human gut
56
130
+
Gln
CTG
[ENA]
¢þ
>WENV182862456
OKPM01003312
[OKPM] human gut metagenome; human gut
86
175
+
Ser
TGA
[ENA]
¢þ
>WENV182862448
OKPM01002445
[OKPM] human gut metagenome; human gut
104
176
+
Thr
CGT
[ENA]
¢þ
>WENV182862451
OKPM01002819
[OKPM] human gut metagenome; human gut
146
231
+
Leu
CAA
[ENA]
¢þ
>WENV182862399
OKPM01000024
[OKPM] human gut metagenome; human gut
172
86
-
Leu
CAG
[ENA]
¢þ
>WENV182862457
OKPM01003312
[OKPM] human gut metagenome; human gut
208
283
+
fMet
CAT
[ENA]
¢þ
>WENV182862452
OKPM01002819
[OKPM] human gut metagenome; human gut
290
363
+
His
GTG
[ENA]
¢þ
>WENV182862458
OKPM01003312
[OKPM] human gut metagenome; human gut
320
395
+
Asp
GTC
[ENA]
¢þ
>WENV182862449
OKPM01002545
[OKPM] human gut metagenome; human gut
377
305
-
Asn
GTT
[ENA]
¢þ
>WENV182862467
OKPM01004598
[OKPM] human gut metagenome; human gut
398
323
-
Arg
CCT
[ENA]
¢þ
>WENV182862459
OKPM01003312
[OKPM] human gut metagenome; human gut
399
476
+
Phe
GAA
[ENA]
¢þ
>WENV182862460
OKPM01003312
[OKPM] human gut metagenome; human gut
487
557
+
Gly
TCC
[ENA]
¢þ
>WENV182862454
OKPM01003256
[OKPM] human gut metagenome; human gut
517
442
-
Arg
CCT
[ENA]
¢þ
>WENV182862465
OKPM01003997
[OKPM] human gut metagenome; human gut
558
462
-
SeC
TCA
[ENA]
¢þ
>WENV182862461
OKPM01003312
[OKPM] human gut metagenome; human gut
572
645
+
Ile
GAT
[ENA]
¢þ
>WENV182862405
OKPM01000073
[OKPM] human gut metagenome; human gut
608
533
-
Ile2
CAT
[ENA]
¢þ
>WENV182862463
OKPM01003372
[OKPM] human gut metagenome; human gut
649
574
-
Ile2
CAT
[ENA]
¢þ
>WENV182862462
OKPM01003312
[OKPM] human gut metagenome; human gut
655
744
+
Ser
GCT
[ENA]
¢þ
>WENV182862464
OKPM01003507
[OKPM] human gut metagenome; human gut
697
612
-
Leu
CAG
[ENA]
¢þ
>WENV182862413
OKPM01000141
[OKPM] human gut metagenome; human gut
706
630
-
Arg
ACG
[ENA]
¢þ
>WENV182862430
OKPM01000265
[OKPM] human gut metagenome; human gut
719
646
-
Gln
TTG
[ENA]
¢þ
>WENV182862453
OKPM01002909
[OKPM] human gut metagenome; human gut
735
664
-
Cys
GCA
[ENA]
¢þ
>WENV182862412
OKPM01000141
[OKPM] human gut metagenome; human gut
803
711
-
Ser
GCT
[ENA]
¢þ
>WENV182862429
OKPM01000265
[OKPM] human gut metagenome; human gut
803
720
-
Tyr
GTA
[ENA]
¢þ
>WENV182862446
OKPM01001848
[OKPM] human gut metagenome; human gut
803
892
+
Ser
CGA
[ENA]
¢þ
>WENV182862428
OKPM01000265
[OKPM] human gut metagenome; human gut
881
809
-
Phe
GAA
[ENA]
¢þ
>WENV182862442
OKPM01000679
[OKPM] human gut metagenome; human gut
895
966
+
Trp
CCA
[ENA]
¢þ
>WENV182862427
OKPM01000265
[OKPM] human gut metagenome; human gut
1002
927
-
Asp
GTC
[ENA]
¢þ
>WENV182862426
OKPM01000265
[OKPM] human gut metagenome; human gut
1086
1012
-
Val
TAC
[ENA]
¢þ
>WENV182862447
OKPM01002213
[OKPM] human gut metagenome; human gut
1286
1213
-
Thr
GGT
[ENA]
¢þ
>WENV182862423
OKPM01000227
[OKPM] human gut metagenome; human gut
1575
1651
+
Val
GAC
[ENA]
¢þ
>WENV182862433
OKPM01000292
[OKPM] human gut metagenome; human gut
1606
1521
-
Ser
TGA
[ENA]
¢þ
>WENV182862444
OKPM01001181
[OKPM] human gut metagenome; human gut
1623
1698
+
Thr
CGT
[ENA]
¢þ
>WENV182862424
OKPM01000227
[OKPM] human gut metagenome; human gut
1656
1732
+
Val
GAC
[ENA]
¢þ
>WENV182862434
OKPM01000355
[OKPM] human gut metagenome; human gut
1789
1864
+
Asn
GTT
[ENA]
¢þ
>WENV182862441
OKPM01000543
[OKPM] human gut metagenome; human gut
1812
1736
-
Arg
TCT
[ENA]
¢þ
>WENV182862411
OKPM01000123
[OKPM] human gut metagenome; human gut
1908
1983
+
Thr
TGT
[ENA]
¢þ
>WENV182862396
OKPM01000009
[OKPM] human gut metagenome; human gut
1992
1919
-
Gly
CCC
[ENA]
¢þ
>WENV182862445
OKPM01001242
[OKPM] human gut metagenome; human gut
2019
1935
-
Leu
CAA
[ENA]
¢þ
>WENV182862443
OKPM01000779
[OKPM] human gut metagenome; human gut
2207
2132
-
Glu
TTC
[ENA]
¢þ
>WENV182862406
OKPM01000080
[OKPM] human gut metagenome; human gut
2289
2214
-
Phe
GAA
[ENA]
¢þ
>WENV182862435
OKPM01000426
[OKPM] human gut metagenome; human gut
2331
2407
+
Met
CAT
[ENA]
¢þ
>WENV182862436
OKPM01000426
[OKPM] human gut metagenome; human gut
2455
2529
+
Gln
CTG
[ENA]
¢þ
>WENV182862404
OKPM01000066
[OKPM] human gut metagenome; human gut
2568
2644
+
fMet
CAT
[ENA]
¢þ
>WENV182862437
OKPM01000490
[OKPM] human gut metagenome; human gut
3588
3663
+
Thr
TGT
[ENA]
¢þ
>WENV182862438
OKPM01000490
[OKPM] human gut metagenome; human gut
3674
3758
+
Tyr
GTA
[ENA]
¢þ
>WENV182862431
OKPM01000282
[OKPM] human gut metagenome; human gut
3789
3702
-
Ser
TGA
[ENA]
¢þ
>WENV182862439
OKPM01000490
[OKPM] human gut metagenome; human gut
3874
3948
+
Gly
TCC
[ENA]
¢þ
>WENV182862440
OKPM01000490
[OKPM] human gut metagenome; human gut
3954
4029
+
Thr
GGT
[ENA]
¢þ
>WENV182862410
OKPM01000113
[OKPM] human gut metagenome; human gut
5953
5878
-
Gly
GCC
[ENA]
¢þ
>WENV182862422
OKPM01000225
[OKPM] human gut metagenome; human gut
6289
6216
-
Pro
TGG
[ENA]
¢þ
>WENV182862421
OKPM01000225
[OKPM] human gut metagenome; human gut
6374
6301
-
Arg
ACG
[ENA]
¢þ
>WENV182862420
OKPM01000225
[OKPM] human gut metagenome; human gut
6474
6389
-
Leu
TAA
[ENA]
¢þ
>WENV182862419
OKPM01000225
[OKPM] human gut metagenome; human gut
6568
6497
-
Gly
GCC
[ENA]
¢þ
>WENV182862418
OKPM01000225
[OKPM] human gut metagenome; human gut
6648
6573
-
Thr
TGT
[ENA]
¢þ
>WENV182862432
OKPM01000290
[OKPM] human gut metagenome; human gut
6665
6591
-
Arg
CCT
[ENA]
¢þ
>WENV182862417
OKPM01000225
[OKPM] human gut metagenome; human gut
6749
6666
-
Leu
TAG
[ENA]
¢þ
>WENV182862416
OKPM01000225
[OKPM] human gut metagenome; human gut
6831
6757
-
Lys
TTT
[ENA]
¢þ
>WENV182862415
OKPM01000225
[OKPM] human gut metagenome; human gut
6907
6833
-
Val
TAC
[ENA]
¢þ
>WENV182862409
OKPM01000110
[OKPM] human gut metagenome; human gut
7058
6983
-
Asn
GTT
[ENA]
¢þ
>WENV182862425
OKPM01000230
[OKPM] human gut metagenome; human gut
7117
7203
+
Leu
GAG
[ENA]
¢þ
>WENV182862414
OKPM01000155
[OKPM] human gut metagenome; human gut
10047
10141
+
SeC
TCA
[ENA]
¢þ
>WENV182862408
OKPM01000110
[OKPM] human gut metagenome; human gut
12299
12224
-
Asn
GTT
[ENA]
¢þ
>WENV182862407
OKPM01000110
[OKPM] human gut metagenome; human gut
13291
13380
+
Ser
CGA
[ENA]
¢þ
>WENV182862403
OKPM01000041
[OKPM] human gut metagenome; human gut
13790
13715
-
Ala
GGC
[ENA]
¢þ
>WENV182862401
OKPM01000041
[OKPM] human gut metagenome; human gut
16489
16564
+
Val
TAC
[ENA]
¢þ
>WENV182862402
OKPM01000041
[OKPM] human gut metagenome; human gut
16568
16643
+
Lys
TTT
[ENA]
¢þ
>WENV182862397
OKPM01000011
[OKPM] human gut metagenome; human gut
24046
24122
+
Arg
TCT
[ENA]
¢þ
>WENV182862400
OKPM01000033
[OKPM] human gut metagenome; human gut
24053
24129
+
fMet
CAT
[ENA]
¢þ
>WENV182862398
OKPM01000016
[OKPM] human gut metagenome; human gut
32596
32682
+
Leu
GAG
[ENA]
¢þ
>WENV182862395
OKPM01000008
[OKPM] human gut metagenome; human gut
33808
33732
-
Pro
GGG
[ENA]
¢þ
>WENV182862394
OKPM01000002
[OKPM] human gut metagenome; human gut
35745
35669
-
Pro
CGG
[ENA]
¢þ
>WENV182862393
OKPM01000001
[OKPM] human gut metagenome; human gut
38166
38090
-
Pro
TGG
[ENA]
¢þ
>WENV182862392
OKPM01000001
[OKPM] human gut metagenome; human gut
38295
38209
-
Leu
CAG
[ENA]
¢þ
>WENV182862391
OKPM01000001
[OKPM] human gut metagenome; human gut
38394
38319
-
His
GTG
[ENA]
¢þ
>WENV182862390
OKPM01000001
[OKPM] human gut metagenome; human gut
38526
38450
-
Arg
CCG
[ENA]
¢þ
>WENV182862389
OKPM01000001
[OKPM] human gut metagenome; human gut
76632
76557
-
Trp
CCA
[ENA]
¢þ
>WENV182862388
OKPM01000001
[OKPM] human gut metagenome; human gut
76762
76686
-
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK