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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKQB] human gut metagenome; human gut
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182864249
OKQB01001402
[OKQB] human gut metagenome; human gut
87
12
-
Ala
GGC
[ENA]
¢þ
>WENV182864259
OKQB01003097
[OKQB] human gut metagenome; human gut
129
37
-
Ser
GCT
[ENA]
¢þ
>WENV182864243
OKQB01001042
[OKQB] human gut metagenome; human gut
269
194
-
Asn
GTT
[ENA]
¢þ
>WENV182864225
OKQB01000293
[OKQB] human gut metagenome; human gut
295
371
+
Pro
CGG
[ENA]
¢þ
>WENV182864245
OKQB01001074
[OKQB] human gut metagenome; human gut
329
253
-
Pro
GGG
[ENA]
¢þ
>WENV182864244
OKQB01001045
[OKQB] human gut metagenome; human gut
496
583
+
Ser
GGA
[ENA]
¢þ
>WENV182864253
OKQB01001695
[OKQB] human gut metagenome; human gut
547
622
+
Gly
GCC
[ENA]
¢þ
>WENV182864236
OKQB01000742
[OKQB] human gut metagenome; human gut
550
626
+
fMet
CAT
[ENA]
¢þ
>WENV182864237
OKQB01000745
[OKQB] human gut metagenome; human gut
555
469
-
Leu
GAG
[ENA]
¢þ
>WENV182864250
OKQB01001454
[OKQB] human gut metagenome; human gut
604
529
-
Phe
GAA
[ENA]
¢þ
>WENV182864258
OKQB01002026
[OKQB] human gut metagenome; human gut
639
564
-
Thr
CGT
[ENA]
¢þ
>WENV182864254
OKQB01001695
[OKQB] human gut metagenome; human gut
676
749
+
Cys
GCA
[ENA]
¢þ
>WENV182864251
OKQB01001465
[OKQB] human gut metagenome; human gut
676
765
+
Ser
CGA
[ENA]
¢þ
>WENV182864257
OKQB01001927
[OKQB] human gut metagenome; human gut
713
788
+
Thr
TGT
[ENA]
¢þ
>WENV182864256
OKQB01001703
[OKQB] human gut metagenome; human gut
759
675
-
Leu
CAA
[ENA]
¢þ
>WENV182864255
OKQB01001695
[OKQB] human gut metagenome; human gut
762
848
+
Leu
TAA
[ENA]
¢þ
>WENV182864246
OKQB01001189
[OKQB] human gut metagenome; human gut
766
842
+
Met
CAT
[ENA]
¢þ
>WENV182864252
OKQB01001674
[OKQB] human gut metagenome; human gut
796
720
-
Asp
GTC
[ENA]
¢þ
>WENV182864247
OKQB01001189
[OKQB] human gut metagenome; human gut
852
936
+
Leu
TAG
[ENA]
¢þ
>WENV182864238
OKQB01000803
[OKQB] human gut metagenome; human gut
949
1033
+
Tyr
GTA
[ENA]
¢þ
>WENV182864248
OKQB01001189
[OKQB] human gut metagenome; human gut
960
1034
+
Gln
TTG
[ENA]
¢þ
>WENV182864235
OKQB01000469
[OKQB] human gut metagenome; human gut
1002
1089
+
Ser
TGA
[ENA]
¢þ
>WENV182864242
OKQB01000924
[OKQB] human gut metagenome; human gut
1086
1011
-
Lys
TTT
[ENA]
¢þ
>WENV182864239
OKQB01000803
[OKQB] human gut metagenome; human gut
1150
1224
+
Gly
TCC
[ENA]
¢þ
>WENV182864241
OKQB01000924
[OKQB] human gut metagenome; human gut
1166
1091
-
Val
TAC
[ENA]
¢þ
>WENV182864224
OKQB01000127
[OKQB] human gut metagenome; human gut
1187
1101
-
Leu
CAG
[ENA]
¢þ
>WENV182864227
OKQB01000333
[OKQB] human gut metagenome; human gut
1216
1290
+
Val
TAC
[ENA]
¢þ
>WENV182864240
OKQB01000803
[OKQB] human gut metagenome; human gut
1231
1306
+
Thr
GGT
[ENA]
¢þ
>WENV182864228
OKQB01000333
[OKQB] human gut metagenome; human gut
1292
1366
+
Lys
TTT
[ENA]
¢þ
>WENV182864229
OKQB01000333
[OKQB] human gut metagenome; human gut
1372
1455
+
Leu
TAG
[ENA]
¢þ
>WENV182864230
OKQB01000333
[OKQB] human gut metagenome; human gut
1470
1545
+
Thr
TGT
[ENA]
¢þ
>WENV182864231
OKQB01000333
[OKQB] human gut metagenome; human gut
1555
1626
+
Gly
GCC
[ENA]
¢þ
>WENV182864232
OKQB01000333
[OKQB] human gut metagenome; human gut
1643
1731
+
Leu
TAA
[ENA]
¢þ
>WENV182864233
OKQB01000333
[OKQB] human gut metagenome; human gut
1751
1826
+
fMet
CAT
[ENA]
¢þ
>WENV182864226
OKQB01000301
[OKQB] human gut metagenome; human gut
1805
1881
+
Arg
CCG
[ENA]
¢þ
>WENV182864234
OKQB01000333
[OKQB] human gut metagenome; human gut
1834
1910
+
Met
CAT
[ENA]
¢þ
>WENV182864223
OKQB01000086
[OKQB] human gut metagenome; human gut
2830
2906
+
Arg
TCT
[ENA]
¢þ
>WENV182864222
OKQB01000007
[OKQB] human gut metagenome; human gut
4038
4113
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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