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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKSJ] human gut metagenome; feces
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182893144
OKSJ01001344
[OKSJ] human gut metagenome; feces
64
138
+
Thr
TGT
[ENA]
¢þ
>WENV182893115
OKSJ01000079
[OKSJ] human gut metagenome; feces
65
141
+
Pro
TGG
[ENA]
¢þ
>WENV182893139
OKSJ01000831
[OKSJ] human gut metagenome; feces
78
3
-
His
GTG
[ENA]
¢þ
>WENV182893149
OKSJ01001559
[OKSJ] human gut metagenome; feces
98
173
+
Phe
GAA
[ENA]
¢þ
>WENV182893147
OKSJ01001501
[OKSJ] human gut metagenome; feces
102
177
+
Thr
CGT
[ENA]
¢þ
>WENV182893154
OKSJ01001592
[OKSJ] human gut metagenome; feces
140
68
-
Cys
GCA
[ENA]
¢þ
>WENV182893146
OKSJ01001414
[OKSJ] human gut metagenome; feces
154
228
+
Ile
TAT
[ENA]
¢þ
>WENV182893156
OKSJ01001801
[OKSJ] human gut metagenome; feces
155
243
+
Ser
GCT
[ENA]
¢þ
>WENV182893145
OKSJ01001344
[OKSJ] human gut metagenome; feces
183
266
+
Tyr
GTA
[ENA]
¢þ
>WENV182893138
OKSJ01000807
[OKSJ] human gut metagenome; feces
210
283
+
Gly
CCC
[ENA]
¢þ
>WENV182893150
OKSJ01001559
[OKSJ] human gut metagenome; feces
211
286
+
Gly
GCC
[ENA]
¢þ
>WENV182893153
OKSJ01001592
[OKSJ] human gut metagenome; feces
216
143
-
Asn
GTT
[ENA]
¢þ
>WENV182893128
OKSJ01000377
[OKSJ] human gut metagenome; feces
224
297
+
Arg
CCT
[ENA]
¢þ
>WENV182893148
OKSJ01001501
[OKSJ] human gut metagenome; feces
270
351
+
Leu
TAG
[ENA]
¢þ
>WENV182893151
OKSJ01001559
[OKSJ] human gut metagenome; feces
377
449
+
Thr
TGT
[ENA]
¢þ
>WENV182893157
OKSJ01001933
[OKSJ] human gut metagenome; feces
394
320
-
Val
TAC
[ENA]
¢þ
>WENV182893120
OKSJ01000088
[OKSJ] human gut metagenome; feces
431
357
-
Lys
CTT
[ENA]
¢þ
>WENV182893152
OKSJ01001559
[OKSJ] human gut metagenome; feces
458
533
+
Ile2
CAT
[ENA]
¢þ
>WENV182893155
OKSJ01001631
[OKSJ] human gut metagenome; feces
472
542
+
Gly
TCC
[ENA]
¢þ
>WENV182893130
OKSJ01000552
[OKSJ] human gut metagenome; feces
479
561
+
Tyr
GTA
[ENA]
¢þ
>WENV182893134
OKSJ01000784
[OKSJ] human gut metagenome; feces
495
568
+
Gly
GCC
[ENA]
¢þ
>WENV182893132
OKSJ01000623
[OKSJ] human gut metagenome; feces
563
638
+
Ala
TGC
[ENA]
¢þ
>WENV182893135
OKSJ01000784
[OKSJ] human gut metagenome; feces
598
669
+
Cys
GCA
[ENA]
¢þ
>WENV182893131
OKSJ01000552
[OKSJ] human gut metagenome; feces
639
713
+
Met
CAT
[ENA]
¢þ
>WENV182893133
OKSJ01000623
[OKSJ] human gut metagenome; feces
642
718
+
Ile
GAT
[ENA]
¢þ
>WENV182893118
OKSJ01000083
[OKSJ] human gut metagenome; feces
649
576
-
Ala
GGC
[ENA]
¢þ
>WENV182893141
OKSJ01000848
[OKSJ] human gut metagenome; feces
655
581
-
Gln
CTG
[ENA]
¢þ
>WENV182893142
OKSJ01000854
[OKSJ] human gut metagenome; feces
661
590
-
Gln
TTG
[ENA]
¢þ
>WENV182893143
OKSJ01001047
[OKSJ] human gut metagenome; feces
695
621
-
Thr
TGT
[ENA]
¢þ
>WENV182893136
OKSJ01000784
[OKSJ] human gut metagenome; feces
709
781
+
Val
GAC
[ENA]
¢þ
>WENV182893117
OKSJ01000083
[OKSJ] human gut metagenome; feces
723
650
-
Ala
TGC
[ENA]
¢þ
>WENV182893140
OKSJ01000848
[OKSJ] human gut metagenome; feces
766
693
-
Glu
CTC
[ENA]
¢þ
>WENV182893137
OKSJ01000784
[OKSJ] human gut metagenome; feces
811
884
+
Val
CAC
[ENA]
¢þ
>WENV182893116
OKSJ01000083
[OKSJ] human gut metagenome; feces
839
765
-
Ile
GAT
[ENA]
¢þ
>WENV182893114
OKSJ01000058
[OKSJ] human gut metagenome; feces
1017
941
-
fMet
CAT
[ENA]
¢þ
>WENV182893129
OKSJ01000526
[OKSJ] human gut metagenome; feces
1043
967
-
Arg
TCT
[ENA]
¢þ
>WENV182893123
OKSJ01000121
[OKSJ] human gut metagenome; feces
1075
1149
+
Asp
GTC
[ENA]
¢þ
>WENV182893122
OKSJ01000116
[OKSJ] human gut metagenome; feces
1255
1341
+
Ser
CGA
[ENA]
¢þ
>WENV182893126
OKSJ01000139
[OKSJ] human gut metagenome; feces
1979
1905
-
Pro
CGG
[ENA]
¢þ
>WENV182893127
OKSJ01000154
[OKSJ] human gut metagenome; feces
2006
2091
+
Ser
TGA
[ENA]
¢þ
>WENV182893125
OKSJ01000124
[OKSJ] human gut metagenome; feces
2099
2025
-
Ala
TGC
[ENA]
¢þ
>WENV182893124
OKSJ01000124
[OKSJ] human gut metagenome; feces
2190
2116
-
Ile
GAT
[ENA]
¢þ
>WENV182893121
OKSJ01000092
[OKSJ] human gut metagenome; feces
2339
2264
-
Trp
CCA
[ENA]
¢þ
>WENV182893119
OKSJ01000084
[OKSJ] human gut metagenome; feces
2817
2734
-
Leu
CAG
[ENA]
¢þ
>WENV182893113
OKSJ01000045
[OKSJ] human gut metagenome; feces
3358
3276
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK