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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OKSY] human gut metagenome; feces
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182903611
OKSY01000662
[OKSY] human gut metagenome; feces
127
52
-
Asn
GTT
[ENA]
¢þ
>WENV182903627
OKSY01001015
[OKSY] human gut metagenome; feces
131
207
+
Arg
CCT
[ENA]
¢þ
>WENV182903632
OKSY01001792
[OKSY] human gut metagenome; feces
135
61
-
His
GTG
[ENA]
¢þ
>WENV182903633
OKSY01002194
[OKSY] human gut metagenome; feces
148
72
-
Pro
GGG
[ENA]
¢þ
>WENV182903639
OKSY01003789
[OKSY] human gut metagenome; feces
198
286
+
Ser
TGA
[ENA]
¢þ
>WENV182903636
OKSY01003293
[OKSY] human gut metagenome; feces
281
208
-
Pro
CGG
[ENA]
¢þ
>WENV182903599
OKSY01000030
[OKSY] human gut metagenome; feces
297
373
+
Arg
CCT
[ENA]
¢þ
>WENV182903607
OKSY01000499
[OKSY] human gut metagenome; feces
325
399
+
Asn
GTT
[ENA]
¢þ
>WENV182903637
OKSY01003651
[OKSY] human gut metagenome; feces
340
414
+
Asp
GTC
[ENA]
¢þ
>WENV182903635
OKSY01003293
[OKSY] human gut metagenome; feces
369
296
-
Phe
GAA
[ENA]
¢þ
>WENV182903612
OKSY01000741
[OKSY] human gut metagenome; feces
383
458
+
Val
TAC
[ENA]
¢þ
>WENV182903604
OKSY01000298
[OKSY] human gut metagenome; feces
387
460
+
Lys
TTT
[ENA]
¢þ
>WENV182903638
OKSY01003775
[OKSY] human gut metagenome; feces
443
369
-
Glu
TTC
[ENA]
¢þ
>WENV182903629
OKSY01001185
[OKSY] human gut metagenome; feces
468
384
-
Leu
TAA
[ENA]
¢þ
>WENV182903613
OKSY01000741
[OKSY] human gut metagenome; feces
488
564
+
Asp
GTC
[ENA]
¢þ
>WENV182903626
OKSY01000799
[OKSY] human gut metagenome; feces
509
434
-
Pro
TGG
[ENA]
¢þ
>WENV182903628
OKSY01001185
[OKSY] human gut metagenome; feces
557
484
-
Gly
GCC
[ENA]
¢þ
>WENV182903631
OKSY01001402
[OKSY] human gut metagenome; feces
559
633
+
fMet
CAT
[ENA]
¢þ
>WENV182903621
OKSY01000767
[OKSY] human gut metagenome; feces
587
505
-
Tyr
GTA
[ENA]
¢þ
>WENV182903614
OKSY01000741
[OKSY] human gut metagenome; feces
588
663
+
Phe
GAA
[ENA]
¢þ
>WENV182903609
OKSY01000499
[OKSY] human gut metagenome; feces
602
518
-
Leu
TAG
[ENA]
¢þ
>WENV182903634
OKSY01002295
[OKSY] human gut metagenome; feces
635
545
-
Ser
GCT
[ENA]
¢þ
>WENV182903615
OKSY01000741
[OKSY] human gut metagenome; feces
673
748
+
Gly
GCC
[ENA]
¢þ
>WENV182903630
OKSY01001398
[OKSY] human gut metagenome; feces
736
810
+
Arg
TCT
[ENA]
¢þ
>WENV182903625
OKSY01000799
[OKSY] human gut metagenome; feces
767
693
-
Gln
TTG
[ENA]
¢þ
>WENV182903620
OKSY01000767
[OKSY] human gut metagenome; feces
823
751
-
Glu
TTC
[ENA]
¢þ
>WENV182903608
OKSY01000499
[OKSY] human gut metagenome; feces
891
805
-
Leu
GAG
[ENA]
¢þ
>WENV182903619
OKSY01000767
[OKSY] human gut metagenome; feces
899
828
-
Gln
TTG
[ENA]
¢þ
>WENV182903624
OKSY01000799
[OKSY] human gut metagenome; feces
905
829
-
His
GTG
[ENA]
¢þ
>WENV182903618
OKSY01000767
[OKSY] human gut metagenome; feces
977
904
-
Trp
CCA
[ENA]
¢þ
>WENV182903623
OKSY01000799
[OKSY] human gut metagenome; feces
988
912
-
Arg
TCT
[ENA]
¢þ
>WENV182903617
OKSY01000767
[OKSY] human gut metagenome; feces
1057
984
-
Asn
GTT
[ENA]
¢þ
>WENV182903622
OKSY01000799
[OKSY] human gut metagenome; feces
1120
1046
-
Gly
TCC
[ENA]
¢þ
>WENV182903600
OKSY01000063
[OKSY] human gut metagenome; feces
1169
1257
+
Ser
TGA
[ENA]
¢þ
>WENV182903616
OKSY01000755
[OKSY] human gut metagenome; feces
1214
1139
-
Gln
CTG
[ENA]
¢þ
>WENV182903603
OKSY01000291
[OKSY] human gut metagenome; feces
1234
1310
+
Arg
ACG
[ENA]
¢þ
>WENV182903606
OKSY01000424
[OKSY] human gut metagenome; feces
1264
1192
-
Thr
GGT
[ENA]
¢þ
>WENV182903605
OKSY01000424
[OKSY] human gut metagenome; feces
1359
1276
-
Tyr
GTA
[ENA]
¢þ
>WENV182903610
OKSY01000536
[OKSY] human gut metagenome; feces
1359
1435
+
Arg
CCG
[ENA]
¢þ
>WENV182903602
OKSY01000246
[OKSY] human gut metagenome; feces
1392
1468
+
Pro
CGG
[ENA]
¢þ
>WENV182903598
OKSY01000029
[OKSY] human gut metagenome; feces
2265
2340
+
Ala
TGC
[ENA]
¢þ
>WENV182903596
OKSY01000015
[OKSY] human gut metagenome; feces
2704
2778
+
Ile
GAT
[ENA]
¢þ
>WENV182903601
OKSY01000109
[OKSY] human gut metagenome; feces
2772
2688
-
Tyr
GTA
[ENA]
¢þ
>WENV182903597
OKSY01000015
[OKSY] human gut metagenome; feces
2786
2860
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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