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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OKTK] human gut metagenome; feces
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182911169
OKTK01000917
[OKTK] human gut metagenome; feces
23
98
+
Ala
TGC
[ENA]
¢þ
>WENV182911160
OKTK01000473
[OKTK] human gut metagenome; feces
75
150
+
Val
TAC
[ENA]
¢þ
>WENV182911155
OKTK01000294
[OKTK] human gut metagenome; feces
138
213
+
Ala
TGC
[ENA]
¢þ
>WENV182911170
OKTK01000917
[OKTK] human gut metagenome; feces
140
215
+
Ile
GAT
[ENA]
¢þ
>WENV182911161
OKTK01000473
[OKTK] human gut metagenome; feces
155
230
+
Lys
TTT
[ENA]
¢þ
>WENV182911159
OKTK01000367
[OKTK] human gut metagenome; feces
167
94
-
Phe
GAA
[ENA]
¢þ
>WENV182911174
OKTK01001310
[OKTK] human gut metagenome; feces
172
256
+
Leu
CAA
[ENA]
¢þ
>WENV182911173
OKTK01001179
[OKTK] human gut metagenome; feces
228
156
-
Thr
TGT
[ENA]
¢þ
>WENV182911156
OKTK01000294
[OKTK] human gut metagenome; feces
233
309
+
Ile
GAT
[ENA]
¢þ
>WENV182911168
OKTK01000809
[OKTK] human gut metagenome; feces
242
317
+
Asn
GTT
[ENA]
¢þ
>WENV182911167
OKTK01000796
[OKTK] human gut metagenome; feces
321
245
-
Ile
GAT
[ENA]
¢þ
>WENV182911163
OKTK01000718
[OKTK] human gut metagenome; feces
334
409
+
Thr
TGT
[ENA]
¢þ
>WENV182911153
OKTK01000112
[OKTK] human gut metagenome; feces
383
458
+
Phe
GAA
[ENA]
¢þ
>WENV182911154
OKTK01000223
[OKTK] human gut metagenome; feces
390
477
+
Ser
GGA
[ENA]
¢þ
>WENV182911166
OKTK01000796
[OKTK] human gut metagenome; feces
400
325
-
Ala
TGC
[ENA]
¢þ
>WENV182911172
OKTK01001179
[OKTK] human gut metagenome; feces
413
338
-
Gly
GCC
[ENA]
¢þ
>WENV182911164
OKTK01000718
[OKTK] human gut metagenome; feces
420
504
+
Tyr
GTA
[ENA]
¢þ
>WENV182911157
OKTK01000367
[OKTK] human gut metagenome; feces
451
525
+
Thr
TGT
[ENA]
¢þ
>WENV182911171
OKTK01001179
[OKTK] human gut metagenome; feces
526
451
-
Phe
GAA
[ENA]
¢þ
>WENV182911165
OKTK01000763
[OKTK] human gut metagenome; feces
533
458
-
Thr
CGT
[ENA]
¢þ
>WENV182911158
OKTK01000367
[OKTK] human gut metagenome; feces
568
653
+
Tyr
GTA
[ENA]
¢þ
>WENV182911162
OKTK01000611
[OKTK] human gut metagenome; feces
570
495
-
Trp
CCA
[ENA]
¢þ
>WENV182911151
OKTK01000009
[OKTK] human gut metagenome; feces
2313
2387
+
Ile
GAT
[ENA]
¢þ
>WENV182911152
OKTK01000009
[OKTK] human gut metagenome; feces
2404
2478
+
Ala
TGC
[ENA]
¢þ
>WENV182911149
OKTK01000006
[OKTK] human gut metagenome; feces
2561
2637
+
Ile
GAT
[ENA]
¢þ
>WENV182911150
OKTK01000006
[OKTK] human gut metagenome; feces
2674
2749
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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