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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OKUJ] human gut metagenome; feces
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182925345
OKUJ01000476
[OKUJ] human gut metagenome; feces
24
99
+
Lys
CTT
[ENA]
¢þ
>WENV182925347
OKUJ01001237
[OKUJ] human gut metagenome; feces
62
133
+
Gln
CTG
[ENA]
¢þ
>WENV182925363
OKUJ01002173
[OKUJ] human gut metagenome; feces
82
173
+
Ser
GGA
[ENA]
¢þ
>WENV182925340
OKUJ01000148
[OKUJ] human gut metagenome; feces
90
164
+
Asp
GTC
[ENA]
¢þ
>WENV182925353
OKUJ01001258
[OKUJ] human gut metagenome; feces
117
41
-
fMet
CAT
[ENA]
¢þ
>WENV182925331
OKUJ01000044
[OKUJ] human gut metagenome; feces
123
195
+
Glu
CTC
[ENA]
¢þ
>WENV182925348
OKUJ01001237
[OKUJ] human gut metagenome; feces
142
215
+
Phe
GAA
[ENA]
¢þ
>WENV182925344
OKUJ01000316
[OKUJ] human gut metagenome; feces
145
71
-
Thr
TGT
[ENA]
¢þ
>WENV182925362
OKUJ01001988
[OKUJ] human gut metagenome; feces
161
86
-
Val
GAC
[ENA]
¢þ
>WENV182925346
OKUJ01001078
[OKUJ] human gut metagenome; feces
185
112
-
Gly
TCC
[ENA]
¢þ
>WENV182925332
OKUJ01000087
[OKUJ] human gut metagenome; feces
199
270
+
Gln
TTG
[ENA]
¢þ
>WENV182925360
OKUJ01001703
[OKUJ] human gut metagenome; feces
207
132
-
Ile2
CAT
[ENA]
¢þ
>WENV182925349
OKUJ01001237
[OKUJ] human gut metagenome; feces
224
306
+
Tyr
GTA
[ENA]
¢þ
>WENV182925358
OKUJ01001444
[OKUJ] human gut metagenome; feces
257
186
-
Glu
TTC
[ENA]
¢þ
>WENV182925350
OKUJ01001237
[OKUJ] human gut metagenome; feces
313
384
+
Gln
TTG
[ENA]
¢þ
>WENV182925365
OKUJ01002437
[OKUJ] human gut metagenome; feces
385
293
-
Ser
GCT
[ENA]
¢þ
>WENV182925351
OKUJ01001237
[OKUJ] human gut metagenome; feces
397
468
+
Sup
TCA
[ENA]
¢þ
>WENV182925354
OKUJ01001292
[OKUJ] human gut metagenome; feces
403
477
+
Asn
GTT
[ENA]
¢þ
>WENV182925341
OKUJ01000163
[OKUJ] human gut metagenome; feces
406
481
+
Val
TAC
[ENA]
¢þ
>WENV182925359
OKUJ01001661
[OKUJ] human gut metagenome; feces
420
495
+
Pro
CGG
[ENA]
¢þ
>WENV182925357
OKUJ01001444
[OKUJ] human gut metagenome; feces
425
349
-
Met
CAT
[ENA]
¢þ
>WENV182925352
OKUJ01001237
[OKUJ] human gut metagenome; feces
474
547
+
His
GTG
[ENA]
¢þ
>WENV182925361
OKUJ01001955
[OKUJ] human gut metagenome; feces
500
415
-
Ser
TGA
[ENA]
¢þ
>WENV182925364
OKUJ01002437
[OKUJ] human gut metagenome; feces
507
419
-
Ser
TGA
[ENA]
¢þ
>WENV182925355
OKUJ01001292
[OKUJ] human gut metagenome; feces
598
670
+
Thr
TGT
[ENA]
¢þ
>WENV182925356
OKUJ01001292
[OKUJ] human gut metagenome; feces
676
751
+
Ile2
CAT
[ENA]
¢þ
>WENV182925343
OKUJ01000267
[OKUJ] human gut metagenome; feces
3352
3279
-
Lys
CTT
[ENA]
¢þ
>WENV182925342
OKUJ01000197
[OKUJ] human gut metagenome; feces
4307
4380
+
Lys
TTT
[ENA]
¢þ
>WENV182925339
OKUJ01000130
[OKUJ] human gut metagenome; feces
4759
4832
+
Phe
GAA
[ENA]
¢þ
>WENV182925336
OKUJ01000118
[OKUJ] human gut metagenome; feces
4963
5045
+
Tyr
GTA
[ENA]
¢þ
>WENV182925334
OKUJ01000110
[OKUJ] human gut metagenome; feces
5115
5028
-
Leu
TAA
[ENA]
¢þ
>WENV182925337
OKUJ01000118
[OKUJ] human gut metagenome; feces
5145
5217
+
Thr
GGT
[ENA]
¢þ
>WENV182925338
OKUJ01000118
[OKUJ] human gut metagenome; feces
6545
6618
+
Trp
CCA
[ENA]
¢þ
>WENV182925328
OKUJ01000010
[OKUJ] human gut metagenome; feces
6575
6501
-
Pro
TGG
[ENA]
¢þ
>WENV182925335
OKUJ01000116
[OKUJ] human gut metagenome; feces
6766
6848
+
Leu
CAA
[ENA]
¢þ
>WENV182925333
OKUJ01000087
[OKUJ] human gut metagenome; feces
7319
7247
-
Arg
CCT
[ENA]
¢þ
>WENV182925330
OKUJ01000016
[OKUJ] human gut metagenome; feces
17007
16919
-
Ser
GGA
[ENA]
¢þ
>WENV182925326
OKUJ01000002
[OKUJ] human gut metagenome; feces
17235
17309
+
Ile2
CAT
[ENA]
¢þ
>WENV182925329
OKUJ01000013
[OKUJ] human gut metagenome; feces
18198
18127
-
Gln
CTG
[ENA]
¢þ
>WENV182925327
OKUJ01000004
[OKUJ] human gut metagenome; feces
23768
23694
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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