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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA gene List
[OKXX] human gut metagenome; human gut
HIT:
33 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182975870
OKXX01001774
[OKXX] human gut metagenome; human gut
70
145
+
Ala
GGC
[ENA]
¢þ
>WENV182975856
OKXX01000391
[OKXX] human gut metagenome; human gut
91
165
+
Val
TAC
[ENA]
¢þ
>WENV182975882
OKXX01002825
[OKXX] human gut metagenome; human gut
93
164
+
Gln
TTG
[ENA]
¢þ
>WENV182975879
OKXX01002121
[OKXX] human gut metagenome; human gut
137
62
-
Gly
GCC
[ENA]
¢þ
>WENV182975871
OKXX01002002
[OKXX] human gut metagenome; human gut
150
225
+
Lys
TTT
[ENA]
¢þ
>WENV182975867
OKXX01001293
[OKXX] human gut metagenome; human gut
170
261
+
Ser
CGA
[ENA]
¢þ
>WENV182975866
OKXX01001109
[OKXX] human gut metagenome; human gut
204
277
+
Trp
CCA
[ENA]
¢þ
>WENV182975874
OKXX01002089
[OKXX] human gut metagenome; human gut
209
135
-
Thr
TGT
[ENA]
¢þ
>WENV182975868
OKXX01001318
[OKXX] human gut metagenome; human gut
225
301
+
Ile
GAT
[ENA]
¢þ
>WENV182975881
OKXX01002254
[OKXX] human gut metagenome; human gut
242
327
+
Tyr
GTA
[ENA]
¢þ
>WENV182975878
OKXX01002121
[OKXX] human gut metagenome; human gut
243
168
-
Phe
GAA
[ENA]
¢þ
>WENV182975862
OKXX01000859
[OKXX] human gut metagenome; human gut
253
324
+
Gly
TCC
[ENA]
¢þ
>WENV182975860
OKXX01000639
[OKXX] human gut metagenome; human gut
258
348
+
Ser
CGA
[ENA]
¢þ
>WENV182975883
OKXX01002863
[OKXX] human gut metagenome; human gut
292
364
+
Glu
CTC
[ENA]
¢þ
>WENV182975864
OKXX01000969
[OKXX] human gut metagenome; human gut
329
402
+
Trp
CCA
[ENA]
¢þ
>WENV182975859
OKXX01000596
[OKXX] human gut metagenome; human gut
332
260
-
Pro
TGG
[ENA]
¢þ
>WENV182975873
OKXX01002080
[OKXX] human gut metagenome; human gut
334
262
-
Glu
TTC
[ENA]
¢þ
>WENV182975857
OKXX01000391
[OKXX] human gut metagenome; human gut
354
428
+
Glu
CTC
[ENA]
¢þ
>WENV182975861
OKXX01000838
[OKXX] human gut metagenome; human gut
374
298
-
Arg
ACG
[ENA]
¢þ
>WENV182975872
OKXX01002021
[OKXX] human gut metagenome; human gut
409
323
-
Leu
CAG
[ENA]
¢þ
>WENV182975880
OKXX01002136
[OKXX] human gut metagenome; human gut
416
343
-
Phe
GAA
[ENA]
¢þ
>WENV182975858
OKXX01000391
[OKXX] human gut metagenome; human gut
432
507
+
Lys
CTT
[ENA]
¢þ
>WENV182975863
OKXX01000859
[OKXX] human gut metagenome; human gut
462
552
+
Ser
GGA
[ENA]
¢þ
>WENV182975875
OKXX01002098
[OKXX] human gut metagenome; human gut
475
566
+
Ser
GGA
[ENA]
¢þ
>WENV182975869
OKXX01001504
[OKXX] human gut metagenome; human gut
482
406
-
Val
CAC
[ENA]
¢þ
>WENV182975877
OKXX01002121
[OKXX] human gut metagenome; human gut
486
412
-
Asp
GTC
[ENA]
¢þ
>WENV182975876
OKXX01002121
[OKXX] human gut metagenome; human gut
565
490
-
Val
TAC
[ENA]
¢þ
>WENV182975865
OKXX01001089
[OKXX] human gut metagenome; human gut
663
589
-
Arg
TCT
[ENA]
¢þ
>WENV182975854
OKXX01000197
[OKXX] human gut metagenome; human gut
785
713
-
Arg
CCT
[ENA]
¢þ
>WENV182975855
OKXX01000215
[OKXX] human gut metagenome; human gut
1306
1234
-
Thr
GGT
[ENA]
¢þ
>WENV182975853
OKXX01000087
[OKXX] human gut metagenome; human gut
1701
1616
-
Ser
TGA
[ENA]
¢þ
>WENV182975851
OKXX01000005
[OKXX] human gut metagenome; human gut
2940
3014
+
Ile
GAT
[ENA]
¢þ
>WENV182975852
OKXX01000005
[OKXX] human gut metagenome; human gut
3031
3105
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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