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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKYA] human gut metagenome; human gut
HIT:
99 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182976560
OKYA01002850
[OKYA] human gut metagenome; human gut
2
78
+
Pro
CGG
[ENA]
¢þ
>WENV182976575
OKYA01004116
[OKYA] human gut metagenome; human gut
16
101
+
Tyr
GTA
[ENA]
¢þ
>WENV182976517
OKYA01000209
[OKYA] human gut metagenome; human gut
62
137
+
Thr
GGT
[ENA]
¢þ
>WENV182976512
OKYA01000097
[OKYA] human gut metagenome; human gut
64
136
+
Thr
GGT
[ENA]
¢þ
>WENV182976541
OKYA01000990
[OKYA] human gut metagenome; human gut
89
164
+
Gly
GCC
[ENA]
¢þ
>WENV182976608
OKYA01006052
[OKYA] human gut metagenome; human gut
95
21
-
Trp
CCA
[ENA]
¢þ
>WENV182976601
OKYA01005707
[OKYA] human gut metagenome; human gut
96
22
-
Trp
CCA
[ENA]
¢þ
>WENV182976540
OKYA01000985
[OKYA] human gut metagenome; human gut
107
181
+
Ala
GGC
[ENA]
¢þ
>WENV182976592
OKYA01005449
[OKYA] human gut metagenome; human gut
113
27
-
Leu
TAA
[ENA]
¢þ
>WENV182976576
OKYA01004116
[OKYA] human gut metagenome; human gut
116
198
+
Tyr
GTA
[ENA]
¢þ
>WENV182976584
OKYA01005036
[OKYA] human gut metagenome; human gut
124
50
-
Arg
CCT
[ENA]
¢þ
>WENV182976588
OKYA01005280
[OKYA] human gut metagenome; human gut
129
56
-
Lys
CTT
[ENA]
¢þ
>WENV182976555
OKYA01002508
[OKYA] human gut metagenome; human gut
131
49
-
Leu
CAG
[ENA]
¢þ
>WENV182976567
OKYA01003553
[OKYA] human gut metagenome; human gut
131
207
+
fMet
CAT
[ENA]
¢þ
>WENV182976597
OKYA01005601
[OKYA] human gut metagenome; human gut
144
60
-
Leu
CAG
[ENA]
¢þ
>WENV182976566
OKYA01003440
[OKYA] human gut metagenome; human gut
158
84
-
Asp
GTC
[ENA]
¢þ
>WENV182976605
OKYA01006037
[OKYA] human gut metagenome; human gut
160
235
+
Arg
TCT
[ENA]
¢þ
>WENV182976580
OKYA01004529
[OKYA] human gut metagenome; human gut
165
91
-
Gln
CTG
[ENA]
¢þ
>WENV182976530
OKYA01000431
[OKYA] human gut metagenome; human gut
182
255
+
fMet
CAT
[ENA]
¢þ
>WENV182976600
OKYA01005707
[OKYA] human gut metagenome; human gut
185
97
-
Asn
GTT
[ENA]
¢þ
>WENV182976607
OKYA01006052
[OKYA] human gut metagenome; human gut
192
101
-
Ser
GGA
[ENA]
¢þ
>WENV182976585
OKYA01005252
[OKYA] human gut metagenome; human gut
193
268
+
Asp
GTC
[ENA]
¢þ
>WENV182976577
OKYA01004116
[OKYA] human gut metagenome; human gut
204
287
+
Tyr
GTA
[ENA]
¢þ
>WENV182976604
OKYA01006017
[OKYA] human gut metagenome; human gut
228
156
-
Glu
CTC
[ENA]
¢þ
>WENV182976596
OKYA01005601
[OKYA] human gut metagenome; human gut
231
145
-
Leu
AAG
[ENA]
¢þ
>WENV182976606
OKYA01006037
[OKYA] human gut metagenome; human gut
242
318
+
Arg
TCT
[ENA]
¢þ
>WENV182976602
OKYA01005909
[OKYA] human gut metagenome; human gut
257
182
-
Pro
GGG
[ENA]
¢þ
>WENV182976554
OKYA01002508
[OKYA] human gut metagenome; human gut
269
196
-
Gly
GCC
[ENA]
¢þ
>WENV182976586
OKYA01005252
[OKYA] human gut metagenome; human gut
269
343
+
Gln
CTG
[ENA]
¢þ
>WENV182976583
OKYA01005036
[OKYA] human gut metagenome; human gut
279
205
-
Met
CAT
[ENA]
¢þ
>WENV182976599
OKYA01005707
[OKYA] human gut metagenome; human gut
282
189
-
Ser
GCT
[ENA]
¢þ
>WENV182976593
OKYA01005570
[OKYA] human gut metagenome; human gut
283
355
+
Arg
CCT
[ENA]
¢þ
>WENV182976579
OKYA01004529
[OKYA] human gut metagenome; human gut
290
214
-
Met
CAT
[ENA]
¢þ
>WENV182976578
OKYA01004116
[OKYA] human gut metagenome; human gut
293
376
+
Tyr
GTA
[ENA]
¢þ
>WENV182976591
OKYA01005449
[OKYA] human gut metagenome; human gut
295
219
-
Leu
CAA
[ENA]
¢þ
>WENV182976539
OKYA01000963
[OKYA] human gut metagenome; human gut
314
387
+
Gly
CCC
[ENA]
¢þ
>WENV182976595
OKYA01005601
[OKYA] human gut metagenome; human gut
331
243
-
Leu
TAA
[ENA]
¢þ
>WENV182976558
OKYA01002754
[OKYA] human gut metagenome; human gut
355
271
-
Leu
TAG
[ENA]
¢þ
>WENV182976582
OKYA01005036
[OKYA] human gut metagenome; human gut
357
282
-
Thr
TGT
[ENA]
¢þ
>WENV182976587
OKYA01005258
[OKYA] human gut metagenome; human gut
361
436
+
fMet
CAT
[ENA]
¢þ
>WENV182976598
OKYA01005707
[OKYA] human gut metagenome; human gut
365
289
-
Asn
GTT
[ENA]
¢þ
>WENV182976603
OKYA01005951
[OKYA] human gut metagenome; human gut
370
275
-
Ser
GCT
[ENA]
¢þ
>WENV182976563
OKYA01003432
[OKYA] human gut metagenome; human gut
410
485
+
Arg
TCT
[ENA]
¢þ
>WENV182976551
OKYA01002109
[OKYA] human gut metagenome; human gut
417
491
+
Arg
TCT
[ENA]
¢þ
>WENV182976594
OKYA01005601
[OKYA] human gut metagenome; human gut
428
344
-
Leu
AAG
[ENA]
¢þ
>WENV182976522
OKYA01000304
[OKYA] human gut metagenome; human gut
428
344
-
Leu
CAA
[ENA]
¢þ
>WENV182976556
OKYA01002668
[OKYA] human gut metagenome; human gut
442
515
+
Lys
TTT
[ENA]
¢þ
>WENV182976561
OKYA01002908
[OKYA] human gut metagenome; human gut
468
393
-
Phe
GAA
[ENA]
¢þ
>WENV182976590
OKYA01005449
[OKYA] human gut metagenome; human gut
484
397
-
Leu
TAA
[ENA]
¢þ
>WENV182976559
OKYA01002807
[OKYA] human gut metagenome; human gut
567
642
+
Thr
CGT
[ENA]
¢þ
>WENV182976589
OKYA01005449
[OKYA] human gut metagenome; human gut
568
492
-
Leu
TAA
[ENA]
¢þ
>WENV182976581
OKYA01005036
[OKYA] human gut metagenome; human gut
577
503
-
Gln
TTG
[ENA]
¢þ
>WENV182976564
OKYA01003432
[OKYA] human gut metagenome; human gut
577
663
+
Leu
TAA
[ENA]
¢þ
>WENV182976568
OKYA01003554
[OKYA] human gut metagenome; human gut
589
667
+
Ala
TGC
[ENA]
¢þ
>WENV182976572
OKYA01003830
[OKYA] human gut metagenome; human gut
657
570
-
Ser
TGA
[ENA]
¢þ
>WENV182976574
OKYA01003874
[OKYA] human gut metagenome; human gut
667
592
-
Lys
TTT
[ENA]
¢þ
>WENV182976565
OKYA01003432
[OKYA] human gut metagenome; human gut
669
753
+
Leu
CAA
[ENA]
¢þ
>WENV182976569
OKYA01003554
[OKYA] human gut metagenome; human gut
673
748
+
Ile
GAT
[ENA]
¢þ
>WENV182976553
OKYA01002190
[OKYA] human gut metagenome; human gut
718
793
+
Asn
GTT
[ENA]
¢þ
>WENV182976573
OKYA01003874
[OKYA] human gut metagenome; human gut
747
672
-
Val
TAC
[ENA]
¢þ
>WENV182976550
OKYA01002099
[OKYA] human gut metagenome; human gut
749
824
+
Ala
GGC
[ENA]
¢þ
>WENV182976570
OKYA01003554
[OKYA] human gut metagenome; human gut
753
828
+
Ala
TGC
[ENA]
¢þ
>WENV182976562
OKYA01003304
[OKYA] human gut metagenome; human gut
756
845
+
Ser
CGA
[ENA]
¢þ
>WENV182976552
OKYA01002111
[OKYA] human gut metagenome; human gut
758
833
+
Ile2
CAT
[ENA]
¢þ
>WENV182976557
OKYA01002673
[OKYA] human gut metagenome; human gut
773
700
-
Gly
CCC
[ENA]
¢þ
>WENV182976571
OKYA01003715
[OKYA] human gut metagenome; human gut
793
709
-
Tyr
GTA
[ENA]
¢þ
>WENV182976525
OKYA01000395
[OKYA] human gut metagenome; human gut
837
913
+
Arg
CCG
[ENA]
¢þ
>WENV182976536
OKYA01000821
[OKYA] human gut metagenome; human gut
841
767
-
Met
CAT
[ENA]
¢þ
>WENV182976529
OKYA01000423
[OKYA] human gut metagenome; human gut
910
825
-
Ser
TGA
[ENA]
¢þ
>WENV182976544
OKYA01001123
[OKYA] human gut metagenome; human gut
924
850
-
His
GTG
[ENA]
¢þ
>WENV182976526
OKYA01000395
[OKYA] human gut metagenome; human gut
972
1047
+
His
GTG
[ENA]
¢þ
>WENV182976527
OKYA01000395
[OKYA] human gut metagenome; human gut
1068
1154
+
Leu
CAG
[ENA]
¢þ
>WENV182976549
OKYA01001401
[OKYA] human gut metagenome; human gut
1071
995
-
Arg
TCT
[ENA]
¢þ
>WENV182976519
OKYA01000257
[OKYA] human gut metagenome; human gut
1098
1022
-
fMet
CAT
[ENA]
¢þ
>WENV182976531
OKYA01000451
[OKYA] human gut metagenome; human gut
1117
1204
+
Ser
GGA
[ENA]
¢þ
>WENV182976548
OKYA01001401
[OKYA] human gut metagenome; human gut
1161
1085
-
Arg
TCG
[ENA]
¢þ
>WENV182976545
OKYA01001280
[OKYA] human gut metagenome; human gut
1197
1272
+
Pro
TGG
[ENA]
¢þ
>WENV182976528
OKYA01000395
[OKYA] human gut metagenome; human gut
1197
1273
+
Pro
TGG
[ENA]
¢þ
>WENV182976547
OKYA01001401
[OKYA] human gut metagenome; human gut
1244
1169
-
Ile2
CAT
[ENA]
¢þ
>WENV182976546
OKYA01001293
[OKYA] human gut metagenome; human gut
1262
1174
-
Ser
GGA
[ENA]
¢þ
>WENV182976514
OKYA01000126
[OKYA] human gut metagenome; human gut
1294
1220
-
Asn
GTT
[ENA]
¢þ
>WENV182976513
OKYA01000097
[OKYA] human gut metagenome; human gut
1424
1497
+
Trp
CCA
[ENA]
¢þ
>WENV182976543
OKYA01001008
[OKYA] human gut metagenome; human gut
1656
1582
-
Thr
TGT
[ENA]
¢þ
>WENV182976532
OKYA01000538
[OKYA] human gut metagenome; human gut
1686
1762
+
Ile
GAT
[ENA]
¢þ
>WENV182976515
OKYA01000176
[OKYA] human gut metagenome; human gut
1774
1849
+
Glu
TTC
[ENA]
¢þ
>WENV182976533
OKYA01000538
[OKYA] human gut metagenome; human gut
1791
1865
+
Ala
TGC
[ENA]
¢þ
>WENV182976534
OKYA01000542
[OKYA] human gut metagenome; human gut
1860
1766
-
SeC
TCA
[ENA]
¢þ
>WENV182976535
OKYA01000759
[OKYA] human gut metagenome; human gut
1931
2002
+
Gln
TTG
[ENA]
¢þ
>WENV182976542
OKYA01000993
[OKYA] human gut metagenome; human gut
2039
2123
+
Leu
CAA
[ENA]
¢þ
>WENV182976537
OKYA01000897
[OKYA] human gut metagenome; human gut
2045
2117
+
Cys
GCA
[ENA]
¢þ
>WENV182976538
OKYA01000953
[OKYA] human gut metagenome; human gut
2246
2321
+
Thr
TGT
[ENA]
¢þ
>WENV182976524
OKYA01000314
[OKYA] human gut metagenome; human gut
2438
2365
-
Pro
CGG
[ENA]
¢þ
>WENV182976523
OKYA01000314
[OKYA] human gut metagenome; human gut
2523
2450
-
Phe
GAA
[ENA]
¢þ
>WENV182976510
OKYA01000017
[OKYA] human gut metagenome; human gut
2523
2595
+
Glu
TTC
[ENA]
¢þ
>WENV182976516
OKYA01000204
[OKYA] human gut metagenome; human gut
3017
3100
+
Tyr
GTA
[ENA]
¢þ
>WENV182976521
OKYA01000258
[OKYA] human gut metagenome; human gut
4243
4168
-
Trp
CCA
[ENA]
¢þ
>WENV182976520
OKYA01000258
[OKYA] human gut metagenome; human gut
4328
4252
-
Asp
GTC
[ENA]
¢þ
>WENV182976518
OKYA01000220
[OKYA] human gut metagenome; human gut
4618
4543
-
Val
TAC
[ENA]
¢þ
>WENV182976511
OKYA01000040
[OKYA] human gut metagenome; human gut
8945
8863
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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