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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OKYE] human gut metagenome; human gut
HIT:
156 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182977473
OKYE01000055
[OKYE] human gut metagenome; human gut
4
78
+
Met
CAT
[ENA]
¢þ
>WENV182977587
OKYE01010609
[OKYE] human gut metagenome; human gut
6
80
+
Val
TAC
[ENA]
¢þ
>WENV182977510
OKYE01001237
[OKYE] human gut metagenome; human gut
39
110
+
Gln
TTG
[ENA]
¢þ
>WENV182977518
OKYE01001854
[OKYE] human gut metagenome; human gut
56
129
+
Gly
CCC
[ENA]
¢þ
>WENV182977582
OKYE01010455
[OKYE] human gut metagenome; human gut
60
135
+
Lys
CTT
[ENA]
¢þ
>WENV182977546
OKYE01004514
[OKYE] human gut metagenome; human gut
72
-1
-
Ala
GGC
[ENA]
¢þ
>WENV182977565
OKYE01006782
[OKYE] human gut metagenome; human gut
76
1
-
Thr
GGT
[ENA]
¢þ
>WENV182977578
OKYE01009473
[OKYE] human gut metagenome; human gut
76
1
-
Phe
GAA
[ENA]
¢þ
>WENV182977564
OKYE01006679
[OKYE] human gut metagenome; human gut
83
157
+
Cys
GCA
[ENA]
¢þ
>WENV182977577
OKYE01009395
[OKYE] human gut metagenome; human gut
114
31
-
Leu
GAG
[ENA]
¢þ
>WENV182977560
OKYE01005834
[OKYE] human gut metagenome; human gut
115
41
-
Lys
TTT
[ENA]
¢þ
>WENV182977511
OKYE01001237
[OKYE] human gut metagenome; human gut
115
187
+
Glu
TTC
[ENA]
¢þ
>WENV182977594
OKYE01011981
[OKYE] human gut metagenome; human gut
121
192
+
Cys
GCA
[ENA]
¢þ
>WENV182977596
OKYE01013344
[OKYE] human gut metagenome; human gut
127
197
+
Gly
CCC
[ENA]
¢þ
>WENV182977535
OKYE01003012
[OKYE] human gut metagenome; human gut
132
59
-
Ile2
CAT
[ENA]
¢þ
>WENV182977474
OKYE01000055
[OKYE] human gut metagenome; human gut
139
213
+
Met
CAT
[ENA]
¢þ
>WENV182977513
OKYE01001362
[OKYE] human gut metagenome; human gut
145
73
-
Arg
CCG
[ENA]
¢þ
>WENV182977591
OKYE01011787
[OKYE] human gut metagenome; human gut
146
70
-
Val
CAC
[ENA]
¢þ
>WENV182977588
OKYE01010735
[OKYE] human gut metagenome; human gut
150
77
-
Thr
CGT
[ENA]
¢þ
>WENV182977517
OKYE01001852
[OKYE] human gut metagenome; human gut
160
251
+
Ser
CGA
[ENA]
¢þ
>WENV182977530
OKYE01002746
[OKYE] human gut metagenome; human gut
169
243
+
Thr
TGT
[ENA]
¢þ
>WENV182977570
OKYE01007257
[OKYE] human gut metagenome; human gut
180
251
+
Asn
GTT
[ENA]
¢þ
>WENV182977583
OKYE01010455
[OKYE] human gut metagenome; human gut
180
254
+
Glu
CTC
[ENA]
¢þ
>WENV182977599
OKYE01014474
[OKYE] human gut metagenome; human gut
184
266
+
Leu
TAG
[ENA]
¢þ
>WENV182977559
OKYE01005834
[OKYE] human gut metagenome; human gut
193
119
-
Gln
CTG
[ENA]
¢þ
>WENV182977557
OKYE01005531
[OKYE] human gut metagenome; human gut
213
289
+
Arg
ACG
[ENA]
¢þ
>WENV182977538
OKYE01003300
[OKYE] human gut metagenome; human gut
220
137
-
Leu
GAG
[ENA]
¢þ
>WENV182977469
OKYE01000029
[OKYE] human gut metagenome; human gut
229
144
-
Leu
TAA
[ENA]
¢þ
>WENV182977471
OKYE01000043
[OKYE] human gut metagenome; human gut
233
159
-
Cys
GCA
[ENA]
¢þ
>WENV182977581
OKYE01009953
[OKYE] human gut metagenome; human gut
251
325
+
Ile2
CAT
[ENA]
¢þ
>WENV182977505
OKYE01000988
[OKYE] human gut metagenome; human gut
253
178
-
Ile2
CAT
[ENA]
¢þ
>WENV182977536
OKYE01003167
[OKYE] human gut metagenome; human gut
259
184
-
Trp
CCA
[ENA]
¢þ
>WENV182977597
OKYE01013433
[OKYE] human gut metagenome; human gut
266
357
+
Ser
GGA
[ENA]
¢þ
>WENV182977584
OKYE01010455
[OKYE] human gut metagenome; human gut
277
353
+
Ile2
CAT
[ENA]
¢þ
>WENV182977556
OKYE01005462
[OKYE] human gut metagenome; human gut
278
202
-
Ile
GAT
[ENA]
¢þ
>WENV182977575
OKYE01009125
[OKYE] human gut metagenome; human gut
282
355
+
fMet
CAT
[ENA]
¢þ
>WENV182977571
OKYE01007257
[OKYE] human gut metagenome; human gut
302
374
+
Glu
TTC
[ENA]
¢þ
>WENV182977562
OKYE01006169
[OKYE] human gut metagenome; human gut
303
229
-
Lys
TTT
[ENA]
¢þ
>WENV182977595
OKYE01012559
[OKYE] human gut metagenome; human gut
316
242
-
Gly
TCC
[ENA]
¢þ
>WENV182977468
OKYE01000029
[OKYE] human gut metagenome; human gut
318
245
-
Gly
GCC
[ENA]
¢þ
>WENV182977526
OKYE01002236
[OKYE] human gut metagenome; human gut
336
263
-
Ala
CGC
[ENA]
¢þ
>WENV182977580
OKYE01009902
[OKYE] human gut metagenome; human gut
343
259
-
Tyr
GTA
[ENA]
¢þ
>WENV182977523
OKYE01002158
[OKYE] human gut metagenome; human gut
348
419
+
Gln
CTG
[ENA]
¢þ
>WENV182977602
OKYE01014977
[OKYE] human gut metagenome; human gut
350
423
+
Gln
TTG
[ENA]
¢þ
>WENV182977512
OKYE01001237
[OKYE] human gut metagenome; human gut
351
433
+
Tyr
GTA
[ENA]
¢þ
>WENV182977555
OKYE01005462
[OKYE] human gut metagenome; human gut
358
283
-
Ala
TGC
[ENA]
¢þ
>WENV182977585
OKYE01010455
[OKYE] human gut metagenome; human gut
359
434
+
Trp
CCA
[ENA]
¢þ
>WENV182977589
OKYE01010926
[OKYE] human gut metagenome; human gut
363
287
-
Arg
CCT
[ENA]
¢þ
>WENV182977451
OKYE01000003
[OKYE] human gut metagenome; human gut
364
280
-
Leu
CAA
[ENA]
¢þ
>WENV182977563
OKYE01006383
[OKYE] human gut metagenome; human gut
367
277
-
Ser
GGA
[ENA]
¢þ
>WENV182977572
OKYE01007257
[OKYE] human gut metagenome; human gut
387
459
+
Cys
GCA
[ENA]
¢þ
>WENV182977553
OKYE01004915
[OKYE] human gut metagenome; human gut
389
316
-
Gly
GCC
[ENA]
¢þ
>WENV182977502
OKYE01000788
[OKYE] human gut metagenome; human gut
393
468
+
Ala
TGC
[ENA]
¢þ
>WENV182977592
OKYE01011921
[OKYE] human gut metagenome; human gut
398
472
+
Ala
GGC
[ENA]
¢þ
>WENV182977601
OKYE01014912
[OKYE] human gut metagenome; human gut
405
489
+
Leu
CAA
[ENA]
¢þ
>WENV182977574
OKYE01009007
[OKYE] human gut metagenome; human gut
414
486
+
Arg
CCG
[ENA]
¢þ
>WENV182977600
OKYE01014553
[OKYE] human gut metagenome; human gut
420
332
-
Ser
GGA
[ENA]
¢þ
>WENV182977579
OKYE01009902
[OKYE] human gut metagenome; human gut
430
355
-
Thr
TGT
[ENA]
¢þ
>WENV182977539
OKYE01003415
[OKYE] human gut metagenome; human gut
439
514
+
Ala
TGC
[ENA]
¢þ
>WENV182977552
OKYE01004915
[OKYE] human gut metagenome; human gut
465
394
-
Gly
TCC
[ENA]
¢þ
>WENV182977598
OKYE01014236
[OKYE] human gut metagenome; human gut
493
417
-
Val
CAC
[ENA]
¢þ
>WENV182977590
OKYE01011446
[OKYE] human gut metagenome; human gut
496
420
-
Arg
CCG
[ENA]
¢þ
>WENV182977544
OKYE01004340
[OKYE] human gut metagenome; human gut
496
569
+
fMet
CAT
[ENA]
¢þ
>WENV182977503
OKYE01000788
[OKYE] human gut metagenome; human gut
503
579
+
Ile
GAT
[ENA]
¢þ
>WENV182977540
OKYE01003415
[OKYE] human gut metagenome; human gut
518
594
+
Ile
GAT
[ENA]
¢þ
>WENV182977499
OKYE01000613
[OKYE] human gut metagenome; human gut
518
594
+
Asn
GTT
[ENA]
¢þ
>WENV182977567
OKYE01006811
[OKYE] human gut metagenome; human gut
520
444
-
Ile
GAT
[ENA]
¢þ
>WENV182977593
OKYE01011946
[OKYE] human gut metagenome; human gut
523
448
-
Pro
TGG
[ENA]
¢þ
>WENV182977551
OKYE01004915
[OKYE] human gut metagenome; human gut
542
469
-
Phe
GAA
[ENA]
¢þ
>WENV182977586
OKYE01010562
[OKYE] human gut metagenome; human gut
550
462
-
Ser
CGA
[ENA]
¢þ
>WENV182977576
OKYE01009125
[OKYE] human gut metagenome; human gut
572
645
+
Asn
GTT
[ENA]
¢þ
>WENV182977478
OKYE01000091
[OKYE] human gut metagenome; human gut
584
509
-
Pro
TGG
[ENA]
¢þ
>WENV182977568
OKYE01006877
[OKYE] human gut metagenome; human gut
596
671
+
Lys
CTT
[ENA]
¢þ
>WENV182977566
OKYE01006811
[OKYE] human gut metagenome; human gut
599
524
-
Ala
TGC
[ENA]
¢þ
>WENV182977561
OKYE01006116
[OKYE] human gut metagenome; human gut
602
515
-
Ser
CGA
[ENA]
¢þ
>WENV182977541
OKYE01004024
[OKYE] human gut metagenome; human gut
611
536
-
Thr
CGT
[ENA]
¢þ
>WENV182977573
OKYE01007901
[OKYE] human gut metagenome; human gut
620
544
-
Pro
TGG
[ENA]
¢þ
>WENV182977550
OKYE01004915
[OKYE] human gut metagenome; human gut
621
546
-
fMet
CAT
[ENA]
¢þ
>WENV182977509
OKYE01001032
[OKYE] human gut metagenome; human gut
643
568
-
Ala
CGC
[ENA]
¢þ
>WENV182977569
OKYE01006877
[OKYE] human gut metagenome; human gut
673
747
+
Glu
CTC
[ENA]
¢þ
>WENV182977497
OKYE01000491
[OKYE] human gut metagenome; human gut
712
629
-
Leu
TAA
[ENA]
¢þ
>WENV182977522
OKYE01002045
[OKYE] human gut metagenome; human gut
752
677
-
Pro
TGG
[ENA]
¢þ
>WENV182977549
OKYE01004915
[OKYE] human gut metagenome; human gut
754
671
-
Tyr
GTA
[ENA]
¢þ
>WENV182977558
OKYE01005773
[OKYE] human gut metagenome; human gut
784
710
-
Pro
GGG
[ENA]
¢þ
>WENV182977527
OKYE01002287
[OKYE] human gut metagenome; human gut
811
887
+
fMet
CAT
[ENA]
¢þ
>WENV182977548
OKYE01004915
[OKYE] human gut metagenome; human gut
831
759
-
Thr
TGT
[ENA]
¢þ
>WENV182977534
OKYE01002978
[OKYE] human gut metagenome; human gut
874
799
-
Lys
CTT
[ENA]
¢þ
>WENV182977528
OKYE01002548
[OKYE] human gut metagenome; human gut
901
975
+
Arg
CCT
[ENA]
¢þ
>WENV182977542
OKYE01004336
[OKYE] human gut metagenome; human gut
905
980
+
Gly
GCC
[ENA]
¢þ
>WENV182977554
OKYE01005162
[OKYE] human gut metagenome; human gut
922
997
+
Pro
CGG
[ENA]
¢þ
>WENV182977547
OKYE01004915
[OKYE] human gut metagenome; human gut
933
859
-
Val
TAC
[ENA]
¢þ
>WENV182977543
OKYE01004336
[OKYE] human gut metagenome; human gut
988
1063
+
Val
TAC
[ENA]
¢þ
>WENV182977506
OKYE01000990
[OKYE] human gut metagenome; human gut
1005
1081
+
Met
CAT
[ENA]
¢þ
>WENV182977545
OKYE01004420
[OKYE] human gut metagenome; human gut
1020
947
-
Pro
CGG
[ENA]
¢þ
>WENV182977519
OKYE01001945
[OKYE] human gut metagenome; human gut
1046
1122
+
Arg
CCG
[ENA]
¢þ
>WENV182977516
OKYE01001832
[OKYE] human gut metagenome; human gut
1075
999
-
fMet
CAT
[ENA]
¢þ
>WENV182977515
OKYE01001625
[OKYE] human gut metagenome; human gut
1091
1164
+
Trp
CCA
[ENA]
¢þ
>WENV182977533
OKYE01002834
[OKYE] human gut metagenome; human gut
1115
1042
-
Ala
TGC
[ENA]
¢þ
>WENV182977507
OKYE01000990
[OKYE] human gut metagenome; human gut
1173
1244
+
Glu
TTC
[ENA]
¢þ
>WENV182977537
OKYE01003220
[OKYE] human gut metagenome; human gut
1207
1282
+
Val
GAC
[ENA]
¢þ
>WENV182977525
OKYE01002227
[OKYE] human gut metagenome; human gut
1225
1137
-
Ser
TGA
[ENA]
¢þ
>WENV182977529
OKYE01002612
[OKYE] human gut metagenome; human gut
1227
1304
+
Arg
CCT
[ENA]
¢þ
>WENV182977532
OKYE01002834
[OKYE] human gut metagenome; human gut
1238
1163
-
Ile
GAT
[ENA]
¢þ
>WENV182977524
OKYE01002227
[OKYE] human gut metagenome; human gut
1309
1234
-
Thr
GGT
[ENA]
¢þ
>WENV182977521
OKYE01002029
[OKYE] human gut metagenome; human gut
1313
1237
-
Trp
CCA
[ENA]
¢þ
>WENV182977531
OKYE01002771
[OKYE] human gut metagenome; human gut
1377
1290
-
Ser
GCT
[ENA]
¢þ
>WENV182977504
OKYE01000888
[OKYE] human gut metagenome; human gut
1499
1426
-
Gln
CTG
[ENA]
¢þ
>WENV182977520
OKYE01001970
[OKYE] human gut metagenome; human gut
1719
1792
+
Gly
TCC
[ENA]
¢þ
>WENV182977514
OKYE01001371
[OKYE] human gut metagenome; human gut
2042
2116
+
Gly
TCC
[ENA]
¢þ
>WENV182977508
OKYE01001015
[OKYE] human gut metagenome; human gut
2173
2248
+
Ala
CGC
[ENA]
¢þ
>WENV182977500
OKYE01000670
[OKYE] human gut metagenome; human gut
2418
2492
+
Ile2
CAT
[ENA]
¢þ
>WENV182977492
OKYE01000257
[OKYE] human gut metagenome; human gut
2651
2575
-
His
GTG
[ENA]
¢þ
>WENV182977491
OKYE01000257
[OKYE] human gut metagenome; human gut
2734
2658
-
Arg
TCT
[ENA]
¢þ
>WENV182977493
OKYE01000305
[OKYE] human gut metagenome; human gut
2849
2922
+
Gln
TTG
[ENA]
¢þ
>WENV182977498
OKYE01000538
[OKYE] human gut metagenome; human gut
2891
2966
+
Gly
CCC
[ENA]
¢þ
>WENV182977490
OKYE01000256
[OKYE] human gut metagenome; human gut
2954
3033
+
Leu
CAA
[ENA]
¢þ
>WENV182977501
OKYE01000674
[OKYE] human gut metagenome; human gut
3167
3243
+
Arg
ACG
[ENA]
¢þ
>WENV182977496
OKYE01000488
[OKYE] human gut metagenome; human gut
3828
3753
-
Glu
TTC
[ENA]
¢þ
>WENV182977495
OKYE01000308
[OKYE] human gut metagenome; human gut
4059
3985
-
Glu
CTC
[ENA]
¢þ
>WENV182977494
OKYE01000308
[OKYE] human gut metagenome; human gut
4500
4413
-
Ser
GCT
[ENA]
¢þ
>WENV182977487
OKYE01000154
[OKYE] human gut metagenome; human gut
4911
4838
-
Lys
CTT
[ENA]
¢þ
>WENV182977486
OKYE01000154
[OKYE] human gut metagenome; human gut
5004
4931
-
Lys
CTT
[ENA]
¢þ
>WENV182977485
OKYE01000154
[OKYE] human gut metagenome; human gut
5101
5028
-
Lys
CTT
[ENA]
¢þ
>WENV182977489
OKYE01000159
[OKYE] human gut metagenome; human gut
5698
5613
-
Ser
TGA
[ENA]
¢þ
>WENV182977475
OKYE01000058
[OKYE] human gut metagenome; human gut
6664
6736
+
Arg
CCG
[ENA]
¢þ
>WENV182977480
OKYE01000101
[OKYE] human gut metagenome; human gut
7079
7155
+
Val
TAC
[ENA]
¢þ
>WENV182977481
OKYE01000101
[OKYE] human gut metagenome; human gut
7194
7270
+
Val
TAC
[ENA]
¢þ
>WENV182977488
OKYE01000158
[OKYE] human gut metagenome; human gut
7514
7433
-
Leu
TAG
[ENA]
¢þ
>WENV182977460
OKYE01000010
[OKYE] human gut metagenome; human gut
8485
8411
-
Thr
TGT
[ENA]
¢þ
>WENV182977476
OKYE01000081
[OKYE] human gut metagenome; human gut
8816
8891
+
Gly
CCC
[ENA]
¢þ
>WENV182977483
OKYE01000146
[OKYE] human gut metagenome; human gut
9652
9579
-
Thr
CGT
[ENA]
¢þ
>WENV182977484
OKYE01000153
[OKYE] human gut metagenome; human gut
9836
9760
-
Arg
CCT
[ENA]
¢þ
>WENV182977482
OKYE01000138
[OKYE] human gut metagenome; human gut
10461
10536
+
Lys
TTT
[ENA]
¢þ
>WENV182977457
OKYE01000007
[OKYE] human gut metagenome; human gut
10941
11014
+
Phe
GAA
[ENA]
¢þ
>WENV182977477
OKYE01000087
[OKYE] human gut metagenome; human gut
11216
11141
-
His
GTG
[ENA]
¢þ
>WENV182977466
OKYE01000021
[OKYE] human gut metagenome; human gut
16110
16038
-
Arg
CCT
[ENA]
¢þ
>WENV182977479
OKYE01000094
[OKYE] human gut metagenome; human gut
17746
17820
+
Arg
TCT
[ENA]
¢þ
>WENV182977465
OKYE01000018
[OKYE] human gut metagenome; human gut
18001
17919
-
Leu
TAG
[ENA]
¢þ
>WENV182977472
OKYE01000052
[OKYE] human gut metagenome; human gut
18046
18120
+
Ile2
CAT
[ENA]
¢þ
>WENV182977470
OKYE01000035
[OKYE] human gut metagenome; human gut
20652
20740
+
Ser
GGA
[ENA]
¢þ
>WENV182977463
OKYE01000013
[OKYE] human gut metagenome; human gut
28045
27971
-
Ala
GGC
[ENA]
¢þ
>WENV182977458
OKYE01000008
[OKYE] human gut metagenome; human gut
34871
34942
+
Gln
CTG
[ENA]
¢þ
>WENV182977449
OKYE01000002
[OKYE] human gut metagenome; human gut
45846
45917
+
Gln
TTG
[ENA]
¢þ
>WENV182977467
OKYE01000027
[OKYE] human gut metagenome; human gut
47941
48014
+
fMet
CAT
[ENA]
¢þ
>WENV182977450
OKYE01000003
[OKYE] human gut metagenome; human gut
50533
50605
+
Glu
TTC
[ENA]
¢þ
>WENV182977459
OKYE01000008
[OKYE] human gut metagenome; human gut
58131
58219
+
Ser
GGA
[ENA]
¢þ
>WENV182977464
OKYE01000017
[OKYE] human gut metagenome; human gut
58450
58378
-
Arg
CCT
[ENA]
¢þ
>WENV182977456
OKYE01000006
[OKYE] human gut metagenome; human gut
64061
63987
-
Asn
GTT
[ENA]
¢þ
>WENV182977462
OKYE01000011
[OKYE] human gut metagenome; human gut
65987
65914
-
Pro
CGG
[ENA]
¢þ
>WENV182977461
OKYE01000011
[OKYE] human gut metagenome; human gut
66168
66243
+
Phe
GAA
[ENA]
¢þ
>WENV182977452
OKYE01000006
[OKYE] human gut metagenome; human gut
77168
77242
+
Thr
TGT
[ENA]
¢þ
>WENV182977453
OKYE01000006
[OKYE] human gut metagenome; human gut
77285
77368
+
Tyr
GTA
[ENA]
¢þ
>WENV182977454
OKYE01000006
[OKYE] human gut metagenome; human gut
77487
77559
+
Thr
GGT
[ENA]
¢þ
>WENV182977455
OKYE01000006
[OKYE] human gut metagenome; human gut
78852
78925
+
Trp
CCA
[ENA]
¢þ
>WENV182977448
OKYE01000001
[OKYE] human gut metagenome; human gut
82332
82259
-
Trp
CCA
[ENA]
¢þ
>WENV182977447
OKYE01000001
[OKYE] human gut metagenome; human gut
95954
96039
+
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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