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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKYR] human gut metagenome; human gut
HIT:
88 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182980580
OKYR01003910
[OKYR] human gut metagenome; human gut
44
119
+
Lys
CTT
[ENA]
¢þ
>WENV182980598
OKYR01006633
[OKYR] human gut metagenome; human gut
75
159
+
Leu
CAA
[ENA]
¢þ
>WENV182980597
OKYR01006327
[OKYR] human gut metagenome; human gut
87
161
+
Gly
TCC
[ENA]
¢þ
>WENV182980565
OKYR01001930
[OKYR] human gut metagenome; human gut
105
20
-
Ser
TGA
[ENA]
¢þ
>WENV182980595
OKYR01006009
[OKYR] human gut metagenome; human gut
138
63
-
Arg
TCT
[ENA]
¢þ
>WENV182980572
OKYR01002601
[OKYR] human gut metagenome; human gut
151
76
-
Ile2
CAT
[ENA]
¢þ
>WENV182980579
OKYR01003726
[OKYR] human gut metagenome; human gut
171
100
-
Gln
CTG
[ENA]
¢þ
>WENV182980573
OKYR01002613
[OKYR] human gut metagenome; human gut
176
249
+
Thr
CGT
[ENA]
¢þ
>WENV182980600
OKYR01007415
[OKYR] human gut metagenome; human gut
181
266
+
Tyr
GTA
[ENA]
¢þ
>WENV182980589
OKYR01005029
[OKYR] human gut metagenome; human gut
199
123
-
Met
CAT
[ENA]
¢þ
>WENV182980564
OKYR01001813
[OKYR] human gut metagenome; human gut
219
301
+
Leu
CAA
[ENA]
¢þ
>WENV182980594
OKYR01005672
[OKYR] human gut metagenome; human gut
220
294
+
Thr
TGT
[ENA]
¢þ
>WENV182980604
OKYR01009891
[OKYR] human gut metagenome; human gut
222
146
-
Pro
CGG
[ENA]
¢þ
>WENV182980585
OKYR01004487
[OKYR] human gut metagenome; human gut
244
158
-
Leu
CAG
[ENA]
¢þ
>WENV182980601
OKYR01008036
[OKYR] human gut metagenome; human gut
259
332
+
Gly
CCC
[ENA]
¢þ
>WENV182980599
OKYR01006994
[OKYR] human gut metagenome; human gut
266
340
+
Arg
CCT
[ENA]
¢þ
>WENV182980552
OKYR01001269
[OKYR] human gut metagenome; human gut
269
340
+
Gln
TTG
[ENA]
¢þ
>WENV182980587
OKYR01004799
[OKYR] human gut metagenome; human gut
273
190
-
Leu
GAG
[ENA]
¢þ
>WENV182980563
OKYR01001790
[OKYR] human gut metagenome; human gut
310
228
-
Leu
TAG
[ENA]
¢þ
>WENV182980590
OKYR01005159
[OKYR] human gut metagenome; human gut
324
249
-
Asn
GTT
[ENA]
¢þ
>WENV182980557
OKYR01001526
[OKYR] human gut metagenome; human gut
421
348
-
Pro
CGG
[ENA]
¢þ
>WENV182980544
OKYR01000621
[OKYR] human gut metagenome; human gut
426
514
+
Ser
GGA
[ENA]
¢þ
>WENV182980602
OKYR01009406
[OKYR] human gut metagenome; human gut
430
344
-
Leu
GAG
[ENA]
¢þ
>WENV182980551
OKYR01001253
[OKYR] human gut metagenome; human gut
462
388
-
Asn
GTT
[ENA]
¢þ
>WENV182980538
OKYR01000499
[OKYR] human gut metagenome; human gut
463
537
+
His
GTG
[ENA]
¢þ
>WENV182980596
OKYR01006110
[OKYR] human gut metagenome; human gut
480
553
+
Arg
CCT
[ENA]
¢þ
>WENV182980576
OKYR01003093
[OKYR] human gut metagenome; human gut
497
571
+
Met
CAT
[ENA]
¢þ
>WENV182980603
OKYR01009659
[OKYR] human gut metagenome; human gut
512
440
-
Pro
TGG
[ENA]
¢þ
>WENV182980556
OKYR01001526
[OKYR] human gut metagenome; human gut
524
451
-
Gln
CTG
[ENA]
¢þ
>WENV182980567
OKYR01002042
[OKYR] human gut metagenome; human gut
549
636
+
Ser
TGA
[ENA]
¢þ
>WENV182980582
OKYR01003939
[OKYR] human gut metagenome; human gut
573
498
-
Thr
CGT
[ENA]
¢þ
>WENV182980550
OKYR01001253
[OKYR] human gut metagenome; human gut
576
502
-
Glu
CTC
[ENA]
¢þ
>WENV182980592
OKYR01005362
[OKYR] human gut metagenome; human gut
588
664
+
Pro
GGG
[ENA]
¢þ
>WENV182980577
OKYR01003304
[OKYR] human gut metagenome; human gut
602
529
-
Gly
CCC
[ENA]
¢þ
>WENV182980558
OKYR01001543
[OKYR] human gut metagenome; human gut
620
546
-
Thr
TGT
[ENA]
¢þ
>WENV182980593
OKYR01005651
[OKYR] human gut metagenome; human gut
621
534
-
Ser
TGA
[ENA]
¢þ
>WENV182980575
OKYR01002670
[OKYR] human gut metagenome; human gut
653
579
-
Cys
GCA
[ENA]
¢þ
>WENV182980591
OKYR01005312
[OKYR] human gut metagenome; human gut
665
590
-
Ala
GGC
[ENA]
¢þ
>WENV182980568
OKYR01002042
[OKYR] human gut metagenome; human gut
669
762
+
Ser
GCT
[ENA]
¢þ
>WENV182980559
OKYR01001576
[OKYR] human gut metagenome; human gut
735
661
-
Ala
GGC
[ENA]
¢þ
>WENV182980574
OKYR01002670
[OKYR] human gut metagenome; human gut
758
683
-
Gly
GCC
[ENA]
¢þ
>WENV182980586
OKYR01004662
[OKYR] human gut metagenome; human gut
781
706
-
His
GTG
[ENA]
¢þ
>WENV182980529
OKYR01000354
[OKYR] human gut metagenome; human gut
805
879
+
Cys
GCA
[ENA]
¢þ
>WENV182980569
OKYR01002343
[OKYR] human gut metagenome; human gut
815
890
+
Pro
TGG
[ENA]
¢þ
>WENV182980588
OKYR01005010
[OKYR] human gut metagenome; human gut
815
902
+
Ser
GGA
[ENA]
¢þ
>WENV182980554
OKYR01001413
[OKYR] human gut metagenome; human gut
831
757
-
Arg
TCT
[ENA]
¢þ
>WENV182980534
OKYR01000404
[OKYR] human gut metagenome; human gut
878
804
-
Ile2
CAT
[ENA]
¢þ
>WENV182980570
OKYR01002343
[OKYR] human gut metagenome; human gut
926
1001
+
Pro
TGG
[ENA]
¢þ
>WENV182980584
OKYR01004464
[OKYR] human gut metagenome; human gut
959
885
-
Asp
GTC
[ENA]
¢þ
>WENV182980523
OKYR01000048
[OKYR] human gut metagenome; human gut
1003
927
-
Asp
GTC
[ENA]
¢þ
>WENV182980539
OKYR01000531
[OKYR] human gut metagenome; human gut
1023
949
-
Ile2
CAT
[ENA]
¢þ
>WENV182980581
OKYR01003932
[OKYR] human gut metagenome; human gut
1044
961
-
Leu
TAA
[ENA]
¢þ
>WENV182980583
OKYR01003949
[OKYR] human gut metagenome; human gut
1096
1021
-
Ile2
CAT
[ENA]
¢þ
>WENV182980571
OKYR01002516
[OKYR] human gut metagenome; human gut
1109
1033
-
Trp
CCA
[ENA]
¢þ
>WENV182980555
OKYR01001427
[OKYR] human gut metagenome; human gut
1165
1090
-
Thr
GGT
[ENA]
¢þ
>WENV182980525
OKYR01000198
[OKYR] human gut metagenome; human gut
1184
1257
+
Trp
CCA
[ENA]
¢þ
>WENV182980562
OKYR01001646
[OKYR] human gut metagenome; human gut
1198
1122
-
Val
TAC
[ENA]
¢þ
>WENV182980578
OKYR01003418
[OKYR] human gut metagenome; human gut
1254
1182
-
Arg
CCG
[ENA]
¢þ
>WENV182980533
OKYR01000390
[OKYR] human gut metagenome; human gut
1314
1398
+
Leu
CAA
[ENA]
¢þ
>WENV182980528
OKYR01000224
[OKYR] human gut metagenome; human gut
1347
1420
+
Lys
TTT
[ENA]
¢þ
>WENV182980542
OKYR01000555
[OKYR] human gut metagenome; human gut
1354
1280
-
Ala
TGC
[ENA]
¢þ
>WENV182980549
OKYR01001238
[OKYR] human gut metagenome; human gut
1378
1306
-
Thr
GGT
[ENA]
¢þ
>WENV182980532
OKYR01000388
[OKYR] human gut metagenome; human gut
1404
1319
-
Ser
TGA
[ENA]
¢þ
>WENV182980541
OKYR01000555
[OKYR] human gut metagenome; human gut
1445
1371
-
Ile
GAT
[ENA]
¢þ
>WENV182980560
OKYR01001596
[OKYR] human gut metagenome; human gut
1455
1528
+
Lys
CTT
[ENA]
¢þ
>WENV182980566
OKYR01001931
[OKYR] human gut metagenome; human gut
1459
1533
+
Ala
GGC
[ENA]
¢þ
>WENV182980546
OKYR01001132
[OKYR] human gut metagenome; human gut
1489
1560
+
Gln
TTG
[ENA]
¢þ
>WENV182980561
OKYR01001596
[OKYR] human gut metagenome; human gut
1552
1625
+
Lys
CTT
[ENA]
¢þ
>WENV182980530
OKYR01000354
[OKYR] human gut metagenome; human gut
1558
1645
+
Ser
GCT
[ENA]
¢þ
>WENV182980547
OKYR01001189
[OKYR] human gut metagenome; human gut
1562
1490
-
Arg
CCT
[ENA]
¢þ
>WENV182980548
OKYR01001238
[OKYR] human gut metagenome; human gut
1577
1494
-
Tyr
GTA
[ENA]
¢þ
>WENV182980526
OKYR01000201
[OKYR] human gut metagenome; human gut
1684
1757
+
Phe
GAA
[ENA]
¢þ
>WENV182980553
OKYR01001355
[OKYR] human gut metagenome; human gut
1701
1630
-
Gln
CTG
[ENA]
¢þ
>WENV182980527
OKYR01000201
[OKYR] human gut metagenome; human gut
1769
1842
+
Pro
CGG
[ENA]
¢þ
>WENV182980545
OKYR01000781
[OKYR] human gut metagenome; human gut
1932
1857
-
Pro
GGG
[ENA]
¢þ
>WENV182980531
OKYR01000354
[OKYR] human gut metagenome; human gut
2000
2074
+
Glu
CTC
[ENA]
¢þ
>WENV182980540
OKYR01000546
[OKYR] human gut metagenome; human gut
2363
2436
+
Gly
GCC
[ENA]
¢þ
>WENV182980543
OKYR01000570
[OKYR] human gut metagenome; human gut
2413
2501
+
Ser
GGA
[ENA]
¢þ
>WENV182980537
OKYR01000440
[OKYR] human gut metagenome; human gut
3063
2988
-
Thr
GGT
[ENA]
¢þ
>WENV182980524
OKYR01000069
[OKYR] human gut metagenome; human gut
3101
3174
+
fMet
CAT
[ENA]
¢þ
>WENV182980536
OKYR01000440
[OKYR] human gut metagenome; human gut
3144
3070
-
Gly
TCC
[ENA]
¢þ
>WENV182980535
OKYR01000440
[OKYR] human gut metagenome; human gut
3345
3261
-
Tyr
GTA
[ENA]
¢þ
>WENV182980519
OKYR01000025
[OKYR] human gut metagenome; human gut
4124
4198
+
Asn
GTT
[ENA]
¢þ
>WENV182980522
OKYR01000048
[OKYR] human gut metagenome; human gut
4430
4355
-
Ala
TGC
[ENA]
¢þ
>WENV182980521
OKYR01000048
[OKYR] human gut metagenome; human gut
4549
4473
-
Ile
GAT
[ENA]
¢þ
>WENV182980520
OKYR01000028
[OKYR] human gut metagenome; human gut
5374
5445
+
Gln
TTG
[ENA]
¢þ
>WENV182980517
OKYR01000003
[OKYR] human gut metagenome; human gut
6858
6786
-
Arg
CCT
[ENA]
¢þ
>WENV182980518
OKYR01000009
[OKYR] human gut metagenome; human gut
8398
8326
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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