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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKYV] human gut metagenome; human gut
HIT:
98 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182981307
OKYV01005897
[OKYV] human gut metagenome; human gut
1
76
+
Pro
GGG
[ENA]
¢þ
>WENV182981236
OKYV01000434
[OKYV] human gut metagenome; human gut
65
140
+
His
GTG
[ENA]
¢þ
>WENV182981277
OKYV01002907
[OKYV] human gut metagenome; human gut
66
138
+
Thr
GGT
[ENA]
¢þ
>WENV182981303
OKYV01005765
[OKYV] human gut metagenome; human gut
81
157
+
Arg
CCG
[ENA]
¢þ
>WENV182981284
OKYV01003623
[OKYV] human gut metagenome; human gut
89
164
+
Gly
GCC
[ENA]
¢þ
>WENV182981317
OKYV01008195
[OKYV] human gut metagenome; human gut
161
72
-
Ser
CGA
[ENA]
¢þ
>WENV182981298
OKYV01004694
[OKYV] human gut metagenome; human gut
183
108
-
Trp
CCA
[ENA]
¢þ
>WENV182981318
OKYV01008308
[OKYV] human gut metagenome; human gut
186
271
+
Tyr
GTA
[ENA]
¢þ
>WENV182981304
OKYV01005765
[OKYV] human gut metagenome; human gut
216
291
+
His
GTG
[ENA]
¢þ
>WENV182981238
OKYV01000591
[OKYV] human gut metagenome; human gut
231
160
-
Gln
TTG
[ENA]
¢þ
>WENV182981299
OKYV01004928
[OKYV] human gut metagenome; human gut
236
309
+
Pro
CGG
[ENA]
¢þ
>WENV182981288
OKYV01003742
[OKYV] human gut metagenome; human gut
251
324
+
Ala
CGC
[ENA]
¢þ
>WENV182981269
OKYV01002447
[OKYV] human gut metagenome; human gut
291
364
+
fMet
CAT
[ENA]
¢þ
>WENV182981305
OKYV01005765
[OKYV] human gut metagenome; human gut
312
398
+
Leu
CAG
[ENA]
¢þ
>WENV182981287
OKYV01003730
[OKYV] human gut metagenome; human gut
317
404
+
Ser
GGA
[ENA]
¢þ
>WENV182981319
OKYV01008706
[OKYV] human gut metagenome; human gut
326
413
+
Ser
TGA
[ENA]
¢þ
>WENV182981308
OKYV01005906
[OKYV] human gut metagenome; human gut
334
260
-
Gly
TCC
[ENA]
¢þ
>WENV182981293
OKYV01004119
[OKYV] human gut metagenome; human gut
338
424
+
Leu
GAG
[ENA]
¢þ
>WENV182981296
OKYV01004298
[OKYV] human gut metagenome; human gut
376
304
-
Pro
TGG
[ENA]
¢þ
>WENV182981312
OKYV01006868
[OKYV] human gut metagenome; human gut
393
469
+
Val
GAC
[ENA]
¢þ
>WENV182981316
OKYV01007862
[OKYV] human gut metagenome; human gut
396
321
-
Gly
CCC
[ENA]
¢þ
>WENV182981266
OKYV01002310
[OKYV] human gut metagenome; human gut
407
478
+
Gln
TTG
[ENA]
¢þ
>WENV182981322
OKYV01009740
[OKYV] human gut metagenome; human gut
426
518
+
Ser
GCT
[ENA]
¢þ
>WENV182981306
OKYV01005765
[OKYV] human gut metagenome; human gut
441
517
+
Pro
TGG
[ENA]
¢þ
>WENV182981320
OKYV01008706
[OKYV] human gut metagenome; human gut
446
539
+
Ser
GCT
[ENA]
¢þ
>WENV182981283
OKYV01003594
[OKYV] human gut metagenome; human gut
447
373
-
His
GTG
[ENA]
¢þ
>WENV182981310
OKYV01006276
[OKYV] human gut metagenome; human gut
456
381
-
Thr
CGT
[ENA]
¢þ
>WENV182981321
OKYV01009705
[OKYV] human gut metagenome; human gut
460
536
+
Pro
CGG
[ENA]
¢þ
>WENV182981286
OKYV01003636
[OKYV] human gut metagenome; human gut
465
381
-
Leu
CAA
[ENA]
¢þ
>WENV182981313
OKYV01006868
[OKYV] human gut metagenome; human gut
474
550
+
Val
GAC
[ENA]
¢þ
>WENV182981282
OKYV01003440
[OKYV] human gut metagenome; human gut
477
406
-
Glu
TTC
[ENA]
¢þ
>WENV182981309
OKYV01006130
[OKYV] human gut metagenome; human gut
479
396
-
Leu
GAG
[ENA]
¢þ
>WENV182981323
OKYV01010203
[OKYV] human gut metagenome; human gut
492
417
-
Lys
TTT
[ENA]
¢þ
>WENV182981315
OKYV01007490
[OKYV] human gut metagenome; human gut
515
440
-
Trp
CCA
[ENA]
¢þ
>WENV182981243
OKYV01000681
[OKYV] human gut metagenome; human gut
533
607
+
Asn
GTT
[ENA]
¢þ
>WENV182981314
OKYV01007490
[OKYV] human gut metagenome; human gut
600
524
-
Asp
GTC
[ENA]
¢þ
>WENV182981280
OKYV01003228
[OKYV] human gut metagenome; human gut
608
525
-
Leu
TAA
[ENA]
¢þ
>WENV182981294
OKYV01004179
[OKYV] human gut metagenome; human gut
612
687
+
Asn
GTT
[ENA]
¢þ
>WENV182981297
OKYV01004594
[OKYV] human gut metagenome; human gut
628
553
-
Ile2
CAT
[ENA]
¢þ
>WENV182981290
OKYV01003852
[OKYV] human gut metagenome; human gut
634
707
+
Gln
CTG
[ENA]
¢þ
>WENV182981261
OKYV01002052
[OKYV] human gut metagenome; human gut
640
713
+
Arg
CCT
[ENA]
¢þ
>WENV182981285
OKYV01003633
[OKYV] human gut metagenome; human gut
640
716
+
fMet
CAT
[ENA]
¢þ
>WENV182981275
OKYV01002750
[OKYV] human gut metagenome; human gut
642
570
-
Glu
CTC
[ENA]
¢þ
>WENV182981292
OKYV01004083
[OKYV] human gut metagenome; human gut
644
719
+
Gly
CCC
[ENA]
¢þ
>WENV182981311
OKYV01006541
[OKYV] human gut metagenome; human gut
644
720
+
fMet
CAT
[ENA]
¢þ
>WENV182981281
OKYV01003440
[OKYV] human gut metagenome; human gut
645
569
-
Met
CAT
[ENA]
¢þ
>WENV182981263
OKYV01002090
[OKYV] human gut metagenome; human gut
648
576
-
Glu
TTC
[ENA]
¢þ
>WENV182981295
OKYV01004191
[OKYV] human gut metagenome; human gut
649
725
+
Trp
CCA
[ENA]
¢þ
>WENV182981262
OKYV01002055
[OKYV] human gut metagenome; human gut
694
621
-
Lys
CTT
[ENA]
¢þ
>WENV182981240
OKYV01000653
[OKYV] human gut metagenome; human gut
707
780
+
Lys
TTT
[ENA]
¢þ
>WENV182981270
OKYV01002580
[OKYV] human gut metagenome; human gut
719
793
+
Glu
CTC
[ENA]
¢þ
>WENV182981260
OKYV01002008
[OKYV] human gut metagenome; human gut
722
649
-
Lys
CTT
[ENA]
¢þ
>WENV182981291
OKYV01003852
[OKYV] human gut metagenome; human gut
737
810
+
Pro
CGG
[ENA]
¢þ
>WENV182981302
OKYV01005760
[OKYV] human gut metagenome; human gut
758
833
+
Thr
CGT
[ENA]
¢þ
>WENV182981273
OKYV01002683
[OKYV] human gut metagenome; human gut
799
724
-
Phe
GAA
[ENA]
¢þ
>WENV182981251
OKYV01001026
[OKYV] human gut metagenome; human gut
800
718
-
Leu
TAG
[ENA]
¢þ
>WENV182981274
OKYV01002750
[OKYV] human gut metagenome; human gut
807
720
-
Ser
GCT
[ENA]
¢þ
>WENV182981271
OKYV01002580
[OKYV] human gut metagenome; human gut
833
909
+
Asn
GTT
[ENA]
¢þ
>WENV182981301
OKYV01005589
[OKYV] human gut metagenome; human gut
836
909
+
Gly
CCC
[ENA]
¢þ
>WENV182981268
OKYV01002374
[OKYV] human gut metagenome; human gut
867
779
-
Ser
GGA
[ENA]
¢þ
>WENV182981267
OKYV01002364
[OKYV] human gut metagenome; human gut
867
791
-
Arg
TCT
[ENA]
¢þ
>WENV182981300
OKYV01005060
[OKYV] human gut metagenome; human gut
886
960
+
Ala
GGC
[ENA]
¢þ
>WENV182981276
OKYV01002853
[OKYV] human gut metagenome; human gut
947
859
-
Ser
GGA
[ENA]
¢þ
>WENV182981279
OKYV01002939
[OKYV] human gut metagenome; human gut
989
914
-
Gly
GCC
[ENA]
¢þ
>WENV182981234
OKYV01000341
[OKYV] human gut metagenome; human gut
1007
934
-
Trp
CCA
[ENA]
¢þ
>WENV182981241
OKYV01000655
[OKYV] human gut metagenome; human gut
1014
941
-
Gly
GCC
[ENA]
¢þ
>WENV182981248
OKYV01000804
[OKYV] human gut metagenome; human gut
1050
968
-
Leu
CAA
[ENA]
¢þ
>WENV182981235
OKYV01000396
[OKYV] human gut metagenome; human gut
1068
1143
+
Pro
TGG
[ENA]
¢þ
>WENV182981226
OKYV01000003
[OKYV] human gut metagenome; human gut
1089
1015
-
Ile2
CAT
[ENA]
¢þ
>WENV182981278
OKYV01002939
[OKYV] human gut metagenome; human gut
1094
1019
-
Phe
GAA
[ENA]
¢þ
>WENV182981289
OKYV01003756
[OKYV] human gut metagenome; human gut
1123
1036
-
Ser
TGA
[ENA]
¢þ
>WENV182981258
OKYV01001479
[OKYV] human gut metagenome; human gut
1292
1383
+
Ser
GGA
[ENA]
¢þ
>WENV182981257
OKYV01001456
[OKYV] human gut metagenome; human gut
1335
1241
-
SeC
TCA
[ENA]
¢þ
>WENV182981246
OKYV01000713
[OKYV] human gut metagenome; human gut
1370
1296
-
Ala
TGC
[ENA]
¢þ
>WENV182981272
OKYV01002602
[OKYV] human gut metagenome; human gut
1381
1454
+
Thr
CGT
[ENA]
¢þ
>WENV182981230
OKYV01000182
[OKYV] human gut metagenome; human gut
1390
1318
-
Arg
CCT
[ENA]
¢þ
>WENV182981253
OKYV01001195
[OKYV] human gut metagenome; human gut
1393
1479
+
Leu
CAG
[ENA]
¢þ
>WENV182981239
OKYV01000645
[OKYV] human gut metagenome; human gut
1397
1472
+
Pro
TGG
[ENA]
¢þ
>WENV182981242
OKYV01000679
[OKYV] human gut metagenome; human gut
1406
1321
-
Ser
TGA
[ENA]
¢þ
>WENV182981254
OKYV01001222
[OKYV] human gut metagenome; human gut
1471
1545
+
Arg
TCT
[ENA]
¢þ
>WENV182981259
OKYV01001548
[OKYV] human gut metagenome; human gut
1474
1547
+
Phe
GAA
[ENA]
¢þ
>WENV182981245
OKYV01000713
[OKYV] human gut metagenome; human gut
1475
1399
-
Ile
GAT
[ENA]
¢þ
>WENV182981264
OKYV01002206
[OKYV] human gut metagenome; human gut
1480
1555
+
Arg
TCT
[ENA]
¢þ
>WENV182981265
OKYV01002206
[OKYV] human gut metagenome; human gut
1563
1639
+
His
GTG
[ENA]
¢þ
>WENV182981237
OKYV01000555
[OKYV] human gut metagenome; human gut
1576
1650
+
Thr
TGT
[ENA]
¢þ
>WENV182981249
OKYV01000880
[OKYV] human gut metagenome; human gut
1658
1575
-
Tyr
GTA
[ENA]
¢þ
>WENV182981244
OKYV01000697
[OKYV] human gut metagenome; human gut
1716
1807
+
Ser
CGA
[ENA]
¢þ
>WENV182981252
OKYV01001049
[OKYV] human gut metagenome; human gut
1999
2073
+
Met
CAT
[ENA]
¢þ
>WENV182981256
OKYV01001419
[OKYV] human gut metagenome; human gut
2055
2143
+
Ser
GGA
[ENA]
¢þ
>WENV182981247
OKYV01000776
[OKYV] human gut metagenome; human gut
2097
2021
-
Arg
CCG
[ENA]
¢þ
>WENV182981255
OKYV01001413
[OKYV] human gut metagenome; human gut
2101
2173
+
Arg
CCG
[ENA]
¢þ
>WENV182981250
OKYV01000936
[OKYV] human gut metagenome; human gut
2235
2309
+
Ile2
CAT
[ENA]
¢þ
>WENV182981233
OKYV01000281
[OKYV] human gut metagenome; human gut
2286
2360
+
Asp
GTC
[ENA]
¢þ
>WENV182981229
OKYV01000175
[OKYV] human gut metagenome; human gut
2309
2235
-
Thr
TGT
[ENA]
¢þ
>WENV182981227
OKYV01000084
[OKYV] human gut metagenome; human gut
2521
2446
-
Val
TAC
[ENA]
¢þ
>WENV182981228
OKYV01000169
[OKYV] human gut metagenome; human gut
3331
3402
+
Gln
CTG
[ENA]
¢þ
>WENV182981231
OKYV01000206
[OKYV] human gut metagenome; human gut
3392
3317
-
Glu
TTC
[ENA]
¢þ
>WENV182981232
OKYV01000270
[OKYV] human gut metagenome; human gut
3623
3548
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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