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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKZP] human gut metagenome; human gut
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182985363
OKZP01000453
[OKZP] human gut metagenome; human gut
90
165
+
Ala
GGC
[ENA]
¢þ
>WENV182985365
OKZP01000716
[OKZP] human gut metagenome; human gut
93
6
-
Ser
TGA
[ENA]
¢þ
>WENV182985383
OKZP01003237
[OKZP] human gut metagenome; human gut
112
185
+
Ala
TGC
[ENA]
¢þ
>WENV182985375
OKZP01001138
[OKZP] human gut metagenome; human gut
151
80
-
Gly
GCC
[ENA]
¢þ
>WENV182985387
OKZP01003482
[OKZP] human gut metagenome; human gut
186
112
-
Val
GAC
[ENA]
¢þ
>WENV182985374
OKZP01001138
[OKZP] human gut metagenome; human gut
229
154
-
Thr
TGT
[ENA]
¢þ
>WENV182985386
OKZP01003482
[OKZP] human gut metagenome; human gut
310
239
-
Cys
GCA
[ENA]
¢þ
>WENV182985373
OKZP01001138
[OKZP] human gut metagenome; human gut
329
246
-
Leu
TAG
[ENA]
¢þ
>WENV182985370
OKZP01001042
[OKZP] human gut metagenome; human gut
332
407
+
Ile2
CAT
[ENA]
¢þ
>WENV182985382
OKZP01002494
[OKZP] human gut metagenome; human gut
345
270
-
Ile2
CAT
[ENA]
¢þ
>WENV182985385
OKZP01003482
[OKZP] human gut metagenome; human gut
412
339
-
Gly
GCC
[ENA]
¢þ
>WENV182985372
OKZP01001138
[OKZP] human gut metagenome; human gut
418
344
-
Lys
TTT
[ENA]
¢þ
>WENV182985368
OKZP01000797
[OKZP] human gut metagenome; human gut
456
372
-
Leu
CAA
[ENA]
¢þ
>WENV182985379
OKZP01001729
[OKZP] human gut metagenome; human gut
489
575
+
Leu
GAG
[ENA]
¢þ
>WENV182985371
OKZP01001138
[OKZP] human gut metagenome; human gut
497
423
-
Val
TAC
[ENA]
¢þ
>WENV182985350
OKZP01000055
[OKZP] human gut metagenome; human gut
507
582
+
Thr
TGT
[ENA]
¢þ
>WENV182985384
OKZP01003482
[OKZP] human gut metagenome; human gut
511
438
-
Val
CAC
[ENA]
¢þ
>WENV182985354
OKZP01000073
[OKZP] human gut metagenome; human gut
579
654
+
Lys
TTT
[ENA]
¢þ
>WENV182985380
OKZP01002192
[OKZP] human gut metagenome; human gut
582
509
-
Gly
CCC
[ENA]
¢þ
>WENV182985351
OKZP01000055
[OKZP] human gut metagenome; human gut
591
675
+
Tyr
GTA
[ENA]
¢þ
>WENV182985381
OKZP01002478
[OKZP] human gut metagenome; human gut
604
691
+
Ser
GGA
[ENA]
¢þ
>WENV182985377
OKZP01001247
[OKZP] human gut metagenome; human gut
613
539
-
Gln
CTG
[ENA]
¢þ
>WENV182985369
OKZP01001009
[OKZP] human gut metagenome; human gut
650
725
+
Asn
GTT
[ENA]
¢þ
>WENV182985376
OKZP01001247
[OKZP] human gut metagenome; human gut
737
661
-
Met
CAT
[ENA]
¢þ
>WENV182985352
OKZP01000055
[OKZP] human gut metagenome; human gut
792
866
+
Gly
TCC
[ENA]
¢þ
>WENV182985366
OKZP01000740
[OKZP] human gut metagenome; human gut
852
777
-
Thr
CGT
[ENA]
¢þ
>WENV182985364
OKZP01000524
[OKZP] human gut metagenome; human gut
867
791
-
Asp
GTC
[ENA]
¢þ
>WENV182985353
OKZP01000055
[OKZP] human gut metagenome; human gut
873
948
+
Thr
GGT
[ENA]
¢þ
>WENV182985362
OKZP01000372
[OKZP] human gut metagenome; human gut
901
825
-
Pro
TGG
[ENA]
¢þ
>WENV182985355
OKZP01000125
[OKZP] human gut metagenome; human gut
1020
1095
+
Phe
GAA
[ENA]
¢þ
>WENV182985361
OKZP01000372
[OKZP] human gut metagenome; human gut
1030
944
-
Leu
CAG
[ENA]
¢þ
>WENV182985378
OKZP01001254
[OKZP] human gut metagenome; human gut
1035
1124
+
Ser
CGA
[ENA]
¢þ
>WENV182985360
OKZP01000372
[OKZP] human gut metagenome; human gut
1126
1051
-
His
GTG
[ENA]
¢þ
>WENV182985359
OKZP01000372
[OKZP] human gut metagenome; human gut
1261
1185
-
Arg
CCG
[ENA]
¢þ
>WENV182985367
OKZP01000749
[OKZP] human gut metagenome; human gut
1464
1389
-
Trp
CCA
[ENA]
¢þ
>WENV182985357
OKZP01000130
[OKZP] human gut metagenome; human gut
2015
1939
-
Arg
ACG
[ENA]
¢þ
>WENV182985356
OKZP01000130
[OKZP] human gut metagenome; human gut
2111
2019
-
Ser
GCT
[ENA]
¢þ
>WENV182985349
OKZP01000002
[OKZP] human gut metagenome; human gut
2247
2172
-
Glu
TTC
[ENA]
¢þ
>WENV182985358
OKZP01000140
[OKZP] human gut metagenome; human gut
2726
2651
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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