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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLCA] human gut metagenome; human gut
HIT:
97 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182999742
OLCA01008155
[OLCA] human gut metagenome; human gut
14
90
+
Pro
TGG
[ENA]
¢þ
>WENV182999725
OLCA01003476
[OLCA] human gut metagenome; human gut
62
146
+
Leu
CAA
[ENA]
¢þ
>WENV182999704
OLCA01001757
[OLCA] human gut metagenome; human gut
66
138
+
Thr
GGT
[ENA]
¢þ
>WENV182999697
OLCA01001589
[OLCA] human gut metagenome; human gut
76
159
+
Tyr
GTA
[ENA]
¢þ
>WENV182999675
OLCA01000622
[OLCA] human gut metagenome; human gut
115
27
-
Ser
GGA
[ENA]
¢þ
>WENV182999743
OLCA01008246
[OLCA] human gut metagenome; human gut
131
55
-
His
GTG
[ENA]
¢þ
>WENV182999696
OLCA01001530
[OLCA] human gut metagenome; human gut
140
215
+
Thr
TGT
[ENA]
¢þ
>WENV182999736
OLCA01005632
[OLCA] human gut metagenome; human gut
170
94
-
Arg
ACG
[ENA]
¢þ
>WENV182999741
OLCA01007851
[OLCA] human gut metagenome; human gut
176
263
+
Ser
TGA
[ENA]
¢þ
>WENV182999669
OLCA01000398
[OLCA] human gut metagenome; human gut
177
102
-
Gly
GCC
[ENA]
¢þ
>WENV182999730
OLCA01004906
[OLCA] human gut metagenome; human gut
193
118
-
Val
GAC
[ENA]
¢þ
>WENV182999744
OLCA01008251
[OLCA] human gut metagenome; human gut
203
278
+
Val
TAC
[ENA]
¢þ
>WENV182999729
OLCA01004591
[OLCA] human gut metagenome; human gut
205
132
-
Ala
CGC
[ENA]
¢þ
>WENV182999732
OLCA01005081
[OLCA] human gut metagenome; human gut
215
289
+
Pro
GGG
[ENA]
¢þ
>WENV182999737
OLCA01006046
[OLCA] human gut metagenome; human gut
216
141
-
Asn
GTT
[ENA]
¢þ
>WENV182999698
OLCA01001640
[OLCA] human gut metagenome; human gut
235
308
+
Pro
CGG
[ENA]
¢þ
>WENV182999665
OLCA01000354
[OLCA] human gut metagenome; human gut
239
153
-
Leu
TAA
[ENA]
¢þ
>WENV182999682
OLCA01000748
[OLCA] human gut metagenome; human gut
262
188
-
Glu
CTC
[ENA]
¢þ
>WENV182999686
OLCA01000812
[OLCA] human gut metagenome; human gut
266
339
+
Lys
TTT
[ENA]
¢þ
>WENV182999735
OLCA01005573
[OLCA] human gut metagenome; human gut
284
358
+
Arg
CCG
[ENA]
¢þ
>WENV182999728
OLCA01003945
[OLCA] human gut metagenome; human gut
292
367
+
Arg
TCT
[ENA]
¢þ
>WENV182999739
OLCA01006894
[OLCA] human gut metagenome; human gut
292
368
+
Ile2
CAT
[ENA]
¢þ
>WENV182999733
OLCA01005141
[OLCA] human gut metagenome; human gut
301
210
-
Ser
CGA
[ENA]
¢þ
>WENV182999738
OLCA01006404
[OLCA] human gut metagenome; human gut
311
225
-
Leu
CAG
[ENA]
¢þ
>WENV182999722
OLCA01003212
[OLCA] human gut metagenome; human gut
337
411
+
Gly
TCC
[ENA]
¢þ
>WENV182999664
OLCA01000354
[OLCA] human gut metagenome; human gut
343
270
-
Cys
GCA
[ENA]
¢þ
>WENV182999734
OLCA01005239
[OLCA] human gut metagenome; human gut
356
431
+
His
GTG
[ENA]
¢þ
>WENV182999668
OLCA01000398
[OLCA] human gut metagenome; human gut
378
295
-
Ser
TGA
[ENA]
¢þ
>WENV182999707
OLCA01001895
[OLCA] human gut metagenome; human gut
380
453
+
Thr
CGT
[ENA]
¢þ
>WENV182999740
OLCA01007376
[OLCA] human gut metagenome; human gut
407
483
+
Pro
TGG
[ENA]
¢þ
>WENV182999720
OLCA01002915
[OLCA] human gut metagenome; human gut
446
373
-
Trp
CCA
[ENA]
¢þ
>WENV182999667
OLCA01000398
[OLCA] human gut metagenome; human gut
454
380
-
Glu
TTC
[ENA]
¢þ
>WENV182999708
OLCA01002035
[OLCA] human gut metagenome; human gut
460
389
-
Gln
TTG
[ENA]
¢þ
>WENV182999726
OLCA01003738
[OLCA] human gut metagenome; human gut
469
556
+
Ser
TGA
[ENA]
¢þ
>WENV182999727
OLCA01003857
[OLCA] human gut metagenome; human gut
491
414
-
Gln
TTG
[ENA]
¢þ
>WENV182999666
OLCA01000398
[OLCA] human gut metagenome; human gut
548
471
-
Ile2
CAT
[ENA]
¢þ
>WENV182999731
OLCA01004931
[OLCA] human gut metagenome; human gut
585
500
-
Leu
CAA
[ENA]
¢þ
>WENV182999662
OLCA01000307
[OLCA] human gut metagenome; human gut
590
515
-
Pro
TGG
[ENA]
¢þ
>WENV182999712
OLCA01002569
[OLCA] human gut metagenome; human gut
591
666
+
Gly
GCC
[ENA]
¢þ
>WENV182999709
OLCA01002265
[OLCA] human gut metagenome; human gut
634
709
+
Arg
ACG
[ENA]
¢þ
>WENV182999693
OLCA01001293
[OLCA] human gut metagenome; human gut
666
582
-
Tyr
GTA
[ENA]
¢þ
>WENV182999723
OLCA01003212
[OLCA] human gut metagenome; human gut
694
603
-
Ser
GCT
[ENA]
¢þ
>WENV182999705
OLCA01001788
[OLCA] human gut metagenome; human gut
697
625
-
Arg
CCG
[ENA]
¢þ
>WENV182999681
OLCA01000748
[OLCA] human gut metagenome; human gut
703
616
-
Ser
GCT
[ENA]
¢þ
>WENV182999706
OLCA01001869
[OLCA] human gut metagenome; human gut
716
641
-
Phe
GAA
[ENA]
¢þ
>WENV182999710
OLCA01002265
[OLCA] human gut metagenome; human gut
716
802
+
Ser
TGA
[ENA]
¢þ
>WENV182999695
OLCA01001489
[OLCA] human gut metagenome; human gut
719
792
+
Phe
GAA
[ENA]
¢þ
>WENV182999713
OLCA01002569
[OLCA] human gut metagenome; human gut
724
814
+
Leu
TAA
[ENA]
¢þ
>WENV182999716
OLCA01002778
[OLCA] human gut metagenome; human gut
725
800
+
Lys
TTT
[ENA]
¢þ
>WENV182999721
OLCA01003151
[OLCA] human gut metagenome; human gut
725
800
+
Gly
CCC
[ENA]
¢þ
>WENV182999718
OLCA01002785
[OLCA] human gut metagenome; human gut
747
671
-
Met
CAT
[ENA]
¢þ
>WENV182999689
OLCA01001196
[OLCA] human gut metagenome; human gut
788
706
-
Leu
TAG
[ENA]
¢þ
>WENV182999715
OLCA01002689
[OLCA] human gut metagenome; human gut
791
698
-
Ser
GCT
[ENA]
¢þ
>WENV182999711
OLCA01002265
[OLCA] human gut metagenome; human gut
808
879
+
Gln
CTG
[ENA]
¢þ
>WENV182999717
OLCA01002778
[OLCA] human gut metagenome; human gut
820
895
+
Lys
CTT
[ENA]
¢þ
>WENV182999702
OLCA01001658
[OLCA] human gut metagenome; human gut
831
756
-
Lys
CTT
[ENA]
¢þ
>WENV182999724
OLCA01003398
[OLCA] human gut metagenome; human gut
879
789
-
Ser
GGA
[ENA]
¢þ
>WENV182999701
OLCA01001658
[OLCA] human gut metagenome; human gut
909
835
-
Glu
CTC
[ENA]
¢þ
>WENV182999714
OLCA01002689
[OLCA] human gut metagenome; human gut
911
823
-
Ser
CGA
[ENA]
¢þ
>WENV182999719
OLCA01002890
[OLCA] human gut metagenome; human gut
953
879
-
Pro
TGG
[ENA]
¢þ
>WENV182999649
OLCA01000032
[OLCA] human gut metagenome; human gut
968
897
-
Gln
TTG
[ENA]
¢þ
>WENV182999690
OLCA01001200
[OLCA] human gut metagenome; human gut
998
1073
+
Ala
GGC
[ENA]
¢þ
>WENV182999688
OLCA01001166
[OLCA] human gut metagenome; human gut
1076
1151
+
Ala
CGC
[ENA]
¢þ
>WENV182999691
OLCA01001200
[OLCA] human gut metagenome; human gut
1082
1157
+
Glu
TTC
[ENA]
¢þ
>WENV182999700
OLCA01001658
[OLCA] human gut metagenome; human gut
1088
1012
-
Asp
GTC
[ENA]
¢þ
>WENV182999670
OLCA01000413
[OLCA] human gut metagenome; human gut
1116
1190
+
Ala
GGC
[ENA]
¢þ
>WENV182999699
OLCA01001658
[OLCA] human gut metagenome; human gut
1172
1097
-
Val
TAC
[ENA]
¢þ
>WENV182999703
OLCA01001705
[OLCA] human gut metagenome; human gut
1176
1248
+
Glu
TTC
[ENA]
¢þ
>WENV182999694
OLCA01001339
[OLCA] human gut metagenome; human gut
1193
1120
-
Lys
TTT
[ENA]
¢þ
>WENV182999692
OLCA01001251
[OLCA] human gut metagenome; human gut
1288
1363
+
Trp
CCA
[ENA]
¢þ
>WENV182999674
OLCA01000600
[OLCA] human gut metagenome; human gut
1310
1224
-
Leu
TAA
[ENA]
¢þ
>WENV182999651
OLCA01000070
[OLCA] human gut metagenome; human gut
1374
1446
+
Arg
CCT
[ENA]
¢þ
>WENV182999673
OLCA01000600
[OLCA] human gut metagenome; human gut
1402
1327
-
Gly
GCC
[ENA]
¢þ
>WENV182999680
OLCA01000748
[OLCA] human gut metagenome; human gut
1458
1384
-
Cys
GCA
[ENA]
¢þ
>WENV182999656
OLCA01000132
[OLCA] human gut metagenome; human gut
1504
1431
-
fMet
CAT
[ENA]
¢þ
>WENV182999685
OLCA01000790
[OLCA] human gut metagenome; human gut
1614
1538
-
Met
CAT
[ENA]
¢þ
>WENV182999676
OLCA01000633
[OLCA] human gut metagenome; human gut
1634
1708
+
Thr
TGT
[ENA]
¢þ
>WENV182999687
OLCA01001075
[OLCA] human gut metagenome; human gut
1641
1726
+
Ser
TGA
[ENA]
¢þ
>WENV182999684
OLCA01000790
[OLCA] human gut metagenome; human gut
1691
1616
-
Thr
GGT
[ENA]
¢þ
>WENV182999683
OLCA01000790
[OLCA] human gut metagenome; human gut
1795
1720
-
fMet
CAT
[ENA]
¢þ
>WENV182999672
OLCA01000548
[OLCA] human gut metagenome; human gut
1835
1910
+
His
GTG
[ENA]
¢þ
>WENV182999671
OLCA01000459
[OLCA] human gut metagenome; human gut
1937
2008
+
Gln
CTG
[ENA]
¢þ
>WENV182999678
OLCA01000688
[OLCA] human gut metagenome; human gut
2162
2088
-
Ala
TGC
[ENA]
¢þ
>WENV182999679
OLCA01000702
[OLCA] human gut metagenome; human gut
2197
2281
+
Leu
CAA
[ENA]
¢þ
>WENV182999677
OLCA01000688
[OLCA] human gut metagenome; human gut
2253
2179
-
Ile
GAT
[ENA]
¢þ
>WENV182999654
OLCA01000108
[OLCA] human gut metagenome; human gut
2275
2204
-
Cys
GCA
[ENA]
¢þ
>WENV182999650
OLCA01000037
[OLCA] human gut metagenome; human gut
2492
2574
+
Leu
TAG
[ENA]
¢þ
>WENV182999655
OLCA01000112
[OLCA] human gut metagenome; human gut
3097
3170
+
Gly
GCC
[ENA]
¢þ
>WENV182999661
OLCA01000272
[OLCA] human gut metagenome; human gut
3322
3247
-
Glu
TTC
[ENA]
¢þ
>WENV182999659
OLCA01000152
[OLCA] human gut metagenome; human gut
3705
3629
-
Ile
GAT
[ENA]
¢þ
>WENV182999663
OLCA01000321
[OLCA] human gut metagenome; human gut
3720
3644
-
Val
TAC
[ENA]
¢þ
>WENV182999648
OLCA01000009
[OLCA] human gut metagenome; human gut
3738
3812
+
Asn
GTT
[ENA]
¢þ
>WENV182999658
OLCA01000135
[OLCA] human gut metagenome; human gut
3836
3924
+
Ser
GGA
[ENA]
¢þ
>WENV182999653
OLCA01000088
[OLCA] human gut metagenome; human gut
3912
3840
-
Glu
TTC
[ENA]
¢þ
>WENV182999660
OLCA01000178
[OLCA] human gut metagenome; human gut
4061
4137
+
Asp
GTC
[ENA]
¢þ
>WENV182999652
OLCA01000086
[OLCA] human gut metagenome; human gut
4150
4222
+
fMet
CAT
[ENA]
¢þ
>WENV182999657
OLCA01000133
[OLCA] human gut metagenome; human gut
4481
4555
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK