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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OLDC] human gut metagenome; human gut
HIT:
103 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183005963
OLDC01007458
[OLDC] human gut metagenome; human gut
8
81
+
Lys
TTT
[ENA]
¢þ
>WENV183005925
OLDC01002670
[OLDC] human gut metagenome; human gut
10
82
+
Pro
TGG
[ENA]
¢þ
>WENV183005969
OLDC01008720
[OLDC] human gut metagenome; human gut
48
134
+
Leu
GAG
[ENA]
¢þ
>WENV183005962
OLDC01006961
[OLDC] human gut metagenome; human gut
56
131
+
Thr
CGT
[ENA]
¢þ
>WENV183005964
OLDC01007843
[OLDC] human gut metagenome; human gut
69
156
+
Ser
TGA
[ENA]
¢þ
>WENV183005938
OLDC01003946
[OLDC] human gut metagenome; human gut
88
3
-
Ser
TGA
[ENA]
¢þ
>WENV183005948
OLDC01004250
[OLDC] human gut metagenome; human gut
90
181
+
Ser
GGA
[ENA]
¢þ
>WENV183005951
OLDC01005160
[OLDC] human gut metagenome; human gut
91
167
+
Arg
CCG
[ENA]
¢þ
>WENV183005960
OLDC01006314
[OLDC] human gut metagenome; human gut
127
53
-
Gly
TCC
[ENA]
¢þ
>WENV183005921
OLDC01002335
[OLDC] human gut metagenome; human gut
167
91
-
His
GTG
[ENA]
¢þ
>WENV183005901
OLDC01000974
[OLDC] human gut metagenome; human gut
197
122
-
Ile2
CAT
[ENA]
¢þ
>WENV183005950
OLDC01004798
[OLDC] human gut metagenome; human gut
197
122
-
Val
GAC
[ENA]
¢þ
>WENV183005930
OLDC01003084
[OLDC] human gut metagenome; human gut
199
274
+
His
GTG
[ENA]
¢þ
>WENV183005959
OLDC01006314
[OLDC] human gut metagenome; human gut
206
131
-
Thr
TGT
[ENA]
¢þ
>WENV183005904
OLDC01001065
[OLDC] human gut metagenome; human gut
214
132
-
Leu
TAG
[ENA]
¢þ
>WENV183005918
OLDC01002202
[OLDC] human gut metagenome; human gut
236
309
+
Thr
CGT
[ENA]
¢þ
>WENV183005936
OLDC01003490
[OLDC] human gut metagenome; human gut
238
313
+
Asn
GTT
[ENA]
¢þ
>WENV183005920
OLDC01002335
[OLDC] human gut metagenome; human gut
250
175
-
Arg
TCT
[ENA]
¢þ
>WENV183005973
OLDC01009596
[OLDC] human gut metagenome; human gut
278
204
-
Glu
TTC
[ENA]
¢þ
>WENV183005943
OLDC01004191
[OLDC] human gut metagenome; human gut
291
367
+
Arg
CCG
[ENA]
¢þ
>WENV183005912
OLDC01001336
[OLDC] human gut metagenome; human gut
297
223
-
Asp
GTC
[ENA]
¢þ
>WENV183005922
OLDC01002577
[OLDC] human gut metagenome; human gut
348
421
+
Arg
CCT
[ENA]
¢þ
>WENV183005965
OLDC01007940
[OLDC] human gut metagenome; human gut
357
430
+
Ile
GAT
[ENA]
¢þ
>WENV183005952
OLDC01005192
[OLDC] human gut metagenome; human gut
367
454
+
Ser
GCT
[ENA]
¢þ
>WENV183005972
OLDC01009596
[OLDC] human gut metagenome; human gut
373
299
-
Asn
GTT
[ENA]
¢þ
>WENV183005911
OLDC01001336
[OLDC] human gut metagenome; human gut
376
301
-
Val
TAC
[ENA]
¢þ
>WENV183005971
OLDC01009479
[OLDC] human gut metagenome; human gut
388
472
+
Leu
CAA
[ENA]
¢þ
>WENV183005944
OLDC01004191
[OLDC] human gut metagenome; human gut
426
501
+
His
GTG
[ENA]
¢þ
>WENV183005967
OLDC01007998
[OLDC] human gut metagenome; human gut
456
380
-
Asn
GTT
[ENA]
¢þ
>WENV183005968
OLDC01008089
[OLDC] human gut metagenome; human gut
457
532
+
Gly
GCC
[ENA]
¢þ
>WENV183005910
OLDC01001336
[OLDC] human gut metagenome; human gut
459
384
-
Gly
GCC
[ENA]
¢þ
>WENV183005935
OLDC01003441
[OLDC] human gut metagenome; human gut
461
537
+
Pro
GGG
[ENA]
¢þ
>WENV183005934
OLDC01003426
[OLDC] human gut metagenome; human gut
505
578
+
Ala
CGC
[ENA]
¢þ
>WENV183005945
OLDC01004191
[OLDC] human gut metagenome; human gut
522
608
+
Leu
CAG
[ENA]
¢þ
>WENV183005953
OLDC01005192
[OLDC] human gut metagenome; human gut
532
604
+
Glu
CTC
[ENA]
¢þ
>WENV183005966
OLDC01007940
[OLDC] human gut metagenome; human gut
532
605
+
Ala
TGC
[ENA]
¢þ
>WENV183005970
OLDC01008792
[OLDC] human gut metagenome; human gut
538
609
+
Arg
CCT
[ENA]
¢þ
>WENV183005898
OLDC01000873
[OLDC] human gut metagenome; human gut
558
484
-
Glu
TTC
[ENA]
¢þ
>WENV183005909
OLDC01001336
[OLDC] human gut metagenome; human gut
564
489
-
Phe
GAA
[ENA]
¢þ
>WENV183005958
OLDC01005952
[OLDC] human gut metagenome; human gut
570
658
+
Ser
GGA
[ENA]
¢þ
>WENV183005956
OLDC01005558
[OLDC] human gut metagenome; human gut
593
681
+
Ser
GGA
[ENA]
¢þ
>WENV183005905
OLDC01001180
[OLDC] human gut metagenome; human gut
603
527
-
Arg
ACG
[ENA]
¢þ
>WENV183005946
OLDC01004191
[OLDC] human gut metagenome; human gut
651
727
+
Pro
TGG
[ENA]
¢þ
>WENV183005937
OLDC01003507
[OLDC] human gut metagenome; human gut
684
610
-
Cys
GCA
[ENA]
¢þ
>WENV183005876
OLDC01000052
[OLDC] human gut metagenome; human gut
689
614
-
Lys
CTT
[ENA]
¢þ
>WENV183005940
OLDC01004088
[OLDC] human gut metagenome; human gut
705
776
+
Gln
TTG
[ENA]
¢þ
>WENV183005895
OLDC01000776
[OLDC] human gut metagenome; human gut
711
637
-
Met
CAT
[ENA]
¢þ
>WENV183005913
OLDC01001372
[OLDC] human gut metagenome; human gut
729
801
+
Cys
GCA
[ENA]
¢þ
>WENV183005961
OLDC01006714
[OLDC] human gut metagenome; human gut
736
643
-
Ser
GCT
[ENA]
¢þ
>WENV183005875
OLDC01000052
[OLDC] human gut metagenome; human gut
767
693
-
Glu
CTC
[ENA]
¢þ
>WENV183005955
OLDC01005480
[OLDC] human gut metagenome; human gut
777
705
-
Arg
CCG
[ENA]
¢þ
>WENV183005949
OLDC01004485
[OLDC] human gut metagenome; human gut
787
714
-
Lys
TTT
[ENA]
¢þ
>WENV183005954
OLDC01005357
[OLDC] human gut metagenome; human gut
788
713
-
Phe
GAA
[ENA]
¢þ
>WENV183005947
OLDC01004201
[OLDC] human gut metagenome; human gut
789
863
+
Ala
GGC
[ENA]
¢þ
>WENV183005908
OLDC01001336
[OLDC] human gut metagenome; human gut
806
732
-
Asp
GTC
[ENA]
¢þ
>WENV183005957
OLDC01005655
[OLDC] human gut metagenome; human gut
851
779
-
Thr
GGT
[ENA]
¢þ
>WENV183005941
OLDC01004103
[OLDC] human gut metagenome; human gut
885
812
-
Gln
CTG
[ENA]
¢þ
>WENV183005933
OLDC01003274
[OLDC] human gut metagenome; human gut
981
895
-
Leu
CAG
[ENA]
¢þ
>WENV183005919
OLDC01002317
[OLDC] human gut metagenome; human gut
1014
940
-
Arg
TCT
[ENA]
¢þ
>WENV183005903
OLDC01001054
[OLDC] human gut metagenome; human gut
1035
962
-
Pro
CGG
[ENA]
¢þ
>WENV183005907
OLDC01001336
[OLDC] human gut metagenome; human gut
1058
983
-
Trp
CCA
[ENA]
¢þ
>WENV183005939
OLDC01003962
[OLDC] human gut metagenome; human gut
1086
1162
+
fMet
CAT
[ENA]
¢þ
>WENV183005942
OLDC01004170
[OLDC] human gut metagenome; human gut
1089
1160
+
Gln
CTG
[ENA]
¢þ
>WENV183005902
OLDC01001054
[OLDC] human gut metagenome; human gut
1120
1047
-
Phe
GAA
[ENA]
¢þ
>WENV183005929
OLDC01002883
[OLDC] human gut metagenome; human gut
1135
1062
-
Thr
CGT
[ENA]
¢þ
>WENV183005926
OLDC01002774
[OLDC] human gut metagenome; human gut
1208
1134
-
Glu
CTC
[ENA]
¢þ
>WENV183005917
OLDC01002011
[OLDC] human gut metagenome; human gut
1216
1289
+
Gly
CCC
[ENA]
¢þ
>WENV183005932
OLDC01003242
[OLDC] human gut metagenome; human gut
1287
1363
+
Val
CAC
[ENA]
¢þ
>WENV183005897
OLDC01000800
[OLDC] human gut metagenome; human gut
1354
1280
-
Ala
TGC
[ENA]
¢þ
>WENV183005928
OLDC01002811
[OLDC] human gut metagenome; human gut
1372
1297
-
Trp
CCA
[ENA]
¢þ
>WENV183005916
OLDC01001768
[OLDC] human gut metagenome; human gut
1396
1481
+
Tyr
GTA
[ENA]
¢þ
>WENV183005931
OLDC01003092
[OLDC] human gut metagenome; human gut
1402
1326
-
Trp
CCA
[ENA]
¢þ
>WENV183005900
OLDC01000932
[OLDC] human gut metagenome; human gut
1413
1487
+
Asp
GTC
[ENA]
¢þ
>WENV183005896
OLDC01000800
[OLDC] human gut metagenome; human gut
1445
1371
-
Ile
GAT
[ENA]
¢þ
>WENV183005927
OLDC01002811
[OLDC] human gut metagenome; human gut
1457
1381
-
Asp
GTC
[ENA]
¢þ
>WENV183005891
OLDC01000453
[OLDC] human gut metagenome; human gut
1505
1431
-
His
GTG
[ENA]
¢þ
>WENV183005880
OLDC01000114
[OLDC] human gut metagenome; human gut
1515
1597
+
Leu
CAA
[ENA]
¢þ
>WENV183005924
OLDC01002644
[OLDC] human gut metagenome; human gut
1545
1620
+
Ala
GGC
[ENA]
¢þ
>WENV183005923
OLDC01002592
[OLDC] human gut metagenome; human gut
1552
1470
-
Leu
TAG
[ENA]
¢þ
>WENV183005915
OLDC01001644
[OLDC] human gut metagenome; human gut
1614
1541
-
Phe
GAA
[ENA]
¢þ
>WENV183005914
OLDC01001465
[OLDC] human gut metagenome; human gut
1737
1663
-
Thr
TGT
[ENA]
¢þ
>WENV183005892
OLDC01000536
[OLDC] human gut metagenome; human gut
1779
1852
+
fMet
CAT
[ENA]
¢þ
>WENV183005899
OLDC01000930
[OLDC] human gut metagenome; human gut
2014
1939
-
Thr
GGT
[ENA]
¢þ
>WENV183005906
OLDC01001279
[OLDC] human gut metagenome; human gut
2107
2032
-
Thr
CGT
[ENA]
¢þ
>WENV183005878
OLDC01000071
[OLDC] human gut metagenome; human gut
2124
2053
-
Gln
TTG
[ENA]
¢þ
>WENV183005886
OLDC01000239
[OLDC] human gut metagenome; human gut
2260
2331
+
Gln
CTG
[ENA]
¢þ
>WENV183005890
OLDC01000403
[OLDC] human gut metagenome; human gut
2391
2465
+
Thr
TGT
[ENA]
¢þ
>WENV183005884
OLDC01000194
[OLDC] human gut metagenome; human gut
2398
2314
-
Leu
TAA
[ENA]
¢þ
>WENV183005883
OLDC01000194
[OLDC] human gut metagenome; human gut
2485
2412
-
Gly
GCC
[ENA]
¢þ
>WENV183005885
OLDC01000221
[OLDC] human gut metagenome; human gut
2677
2752
+
Pro
TGG
[ENA]
¢þ
>WENV183005893
OLDC01000556
[OLDC] human gut metagenome; human gut
2878
2953
+
Lys
TTT
[ENA]
¢þ
>WENV183005894
OLDC01000731
[OLDC] human gut metagenome; human gut
2988
2909
-
Leu
CAA
[ENA]
¢þ
>WENV183005889
OLDC01000368
[OLDC] human gut metagenome; human gut
3392
3317
-
Glu
TTC
[ENA]
¢þ
>WENV183005881
OLDC01000162
[OLDC] human gut metagenome; human gut
4046
4118
+
Arg
CCT
[ENA]
¢þ
>WENV183005882
OLDC01000166
[OLDC] human gut metagenome; human gut
4070
3995
-
Val
TAC
[ENA]
¢þ
>WENV183005872
OLDC01000022
[OLDC] human gut metagenome; human gut
4077
3994
-
Tyr
GTA
[ENA]
¢þ
>WENV183005888
OLDC01000264
[OLDC] human gut metagenome; human gut
4177
4104
-
Trp
CCA
[ENA]
¢þ
>WENV183005887
OLDC01000240
[OLDC] human gut metagenome; human gut
4241
4316
+
Pro
GGG
[ENA]
¢þ
>WENV183005874
OLDC01000030
[OLDC] human gut metagenome; human gut
4676
4602
-
Asn
GTT
[ENA]
¢þ
>WENV183005877
OLDC01000063
[OLDC] human gut metagenome; human gut
4735
4819
+
Leu
CAA
[ENA]
¢þ
>WENV183005873
OLDC01000029
[OLDC] human gut metagenome; human gut
5174
5245
+
Gln
TTG
[ENA]
¢þ
>WENV183005879
OLDC01000103
[OLDC] human gut metagenome; human gut
6131
6203
+
Arg
CCT
[ENA]
¢þ
>WENV183005871
OLDC01000014
[OLDC] human gut metagenome; human gut
11379
11453
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK