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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLDV] human gut metagenome; human gut
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183010337
OLDV01002614
[OLDV] human gut metagenome; human gut
9
98
+
Ser
CGA
[ENA]
¢þ
>WENV183010336
OLDV01001997
[OLDV] human gut metagenome; human gut
63
138
+
Trp
CCA
[ENA]
¢þ
>WENV183010320
OLDV01000142
[OLDV] human gut metagenome; human gut
78
2
-
Asp
GTC
[ENA]
¢þ
>WENV183010340
OLDV01003239
[OLDV] human gut metagenome; human gut
106
33
-
Gly
CCC
[ENA]
¢þ
>WENV183010334
OLDV01001859
[OLDV] human gut metagenome; human gut
110
183
+
Cys
GCA
[ENA]
¢þ
>WENV183010333
OLDV01001811
[OLDV] human gut metagenome; human gut
135
60
-
Thr
TGT
[ENA]
¢þ
>WENV183010338
OLDV01002724
[OLDV] human gut metagenome; human gut
188
273
+
Ser
TGA
[ENA]
¢þ
>WENV183010335
OLDV01001859
[OLDV] human gut metagenome; human gut
196
282
+
Leu
TAA
[ENA]
¢þ
>WENV183010332
OLDV01001790
[OLDV] human gut metagenome; human gut
208
133
-
Asn
GTT
[ENA]
¢þ
>WENV183010328
OLDV01001124
[OLDV] human gut metagenome; human gut
403
328
-
Thr
TGT
[ENA]
¢þ
>WENV183010341
OLDV01003657
[OLDV] human gut metagenome; human gut
422
349
-
Gly
CCC
[ENA]
¢þ
>WENV183010326
OLDV01001056
[OLDV] human gut metagenome; human gut
463
388
-
Ile2
CAT
[ENA]
¢þ
>WENV183010331
OLDV01001751
[OLDV] human gut metagenome; human gut
474
568
+
SeC
TCA
[ENA]
¢þ
>WENV183010327
OLDV01001124
[OLDV] human gut metagenome; human gut
481
406
-
Asn
GTT
[ENA]
¢þ
>WENV183010329
OLDV01001344
[OLDV] human gut metagenome; human gut
525
600
+
Asn
GTT
[ENA]
¢þ
>WENV183010339
OLDV01002931
[OLDV] human gut metagenome; human gut
551
475
-
Arg
TCT
[ENA]
¢þ
>WENV183010323
OLDV01000525
[OLDV] human gut metagenome; human gut
572
483
-
Ser
CGA
[ENA]
¢þ
>WENV183010330
OLDV01001509
[OLDV] human gut metagenome; human gut
596
680
+
Leu
CAA
[ENA]
¢þ
>WENV183010324
OLDV01000576
[OLDV] human gut metagenome; human gut
855
768
-
Ser
TGA
[ENA]
¢þ
>WENV183010322
OLDV01000431
[OLDV] human gut metagenome; human gut
915
840
-
Thr
CGT
[ENA]
¢þ
>WENV183010325
OLDV01000750
[OLDV] human gut metagenome; human gut
1070
996
-
Arg
CCT
[ENA]
¢þ
>WENV183010321
OLDV01000401
[OLDV] human gut metagenome; human gut
1543
1619
+
Pro
GGG
[ENA]
¢þ
>WENV183010319
OLDV01000105
[OLDV] human gut metagenome; human gut
1841
1766
-
Phe
GAA
[ENA]
¢þ
>WENV183010318
OLDV01000052
[OLDV] human gut metagenome; human gut
2082
2158
+
fMet
CAT
[ENA]
¢þ
>WENV183010313
OLDV01000005
[OLDV] human gut metagenome; human gut
4025
3950
-
Ala
TGC
[ENA]
¢þ
>WENV183010312
OLDV01000005
[OLDV] human gut metagenome; human gut
4144
4068
-
Ile
GAT
[ENA]
¢þ
>WENV183010314
OLDV01000013
[OLDV] human gut metagenome; human gut
4460
4536
+
Arg
CCG
[ENA]
¢þ
>WENV183010315
OLDV01000013
[OLDV] human gut metagenome; human gut
4595
4670
+
His
GTG
[ENA]
¢þ
>WENV183010316
OLDV01000013
[OLDV] human gut metagenome; human gut
4691
4777
+
Leu
CAG
[ENA]
¢þ
>WENV183010317
OLDV01000013
[OLDV] human gut metagenome; human gut
4820
4896
+
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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