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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLEL] human gut metagenome; human gut
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183014758
OLEL01004281
[OLEL] human gut metagenome; human gut
42
116
+
Val
TAC
[ENA]
¢þ
>WENV183014740
OLEL01000906
[OLEL] human gut metagenome; human gut
101
26
-
Thr
GGT
[ENA]
¢þ
>WENV183014759
OLEL01004281
[OLEL] human gut metagenome; human gut
140
213
+
Thr
TGT
[ENA]
¢þ
>WENV183014739
OLEL01000906
[OLEL] human gut metagenome; human gut
181
105
-
Asp
GTC
[ENA]
¢þ
>WENV183014747
OLEL01001374
[OLEL] human gut metagenome; human gut
186
258
+
Pro
TGG
[ENA]
¢þ
>WENV183014757
OLEL01003890
[OLEL] human gut metagenome; human gut
209
136
-
Lys
TTT
[ENA]
¢þ
>WENV183014760
OLEL01004281
[OLEL] human gut metagenome; human gut
217
293
+
Ile2
CAT
[ENA]
¢þ
>WENV183014723
OLEL01000026
[OLEL] human gut metagenome; human gut
224
136
-
Leu
TAA
[ENA]
¢þ
>WENV183014755
OLEL01003486
[OLEL] human gut metagenome; human gut
246
321
+
Ala
GGC
[ENA]
¢þ
>WENV183014738
OLEL01000906
[OLEL] human gut metagenome; human gut
260
185
-
Val
TAC
[ENA]
¢þ
>WENV183014749
OLEL01001512
[OLEL] human gut metagenome; human gut
262
179
-
Tyr
GTA
[ENA]
¢þ
>WENV183014742
OLEL01001352
[OLEL] human gut metagenome; human gut
268
340
+
Ala
TGC
[ENA]
¢þ
>WENV183014756
OLEL01003710
[OLEL] human gut metagenome; human gut
275
203
-
Glu
CTC
[ENA]
¢þ
>WENV183014741
OLEL01001133
[OLEL] human gut metagenome; human gut
276
191
-
Ser
TGA
[ENA]
¢þ
>WENV183014754
OLEL01003140
[OLEL] human gut metagenome; human gut
280
208
-
Glu
TTC
[ENA]
¢þ
>WENV183014761
OLEL01004281
[OLEL] human gut metagenome; human gut
297
372
+
Trp
CCA
[ENA]
¢þ
>WENV183014722
OLEL01000026
[OLEL] human gut metagenome; human gut
328
254
-
Asp
GTC
[ENA]
¢þ
>WENV183014753
OLEL01002948
[OLEL] human gut metagenome; human gut
342
268
-
Ile2
CAT
[ENA]
¢þ
>WENV183014737
OLEL01000906
[OLEL] human gut metagenome; human gut
343
268
-
Gly
GCC
[ENA]
¢þ
>WENV183014750
OLEL01001524
[OLEL] human gut metagenome; human gut
368
294
-
Arg
CCG
[ENA]
¢þ
>WENV183014752
OLEL01002025
[OLEL] human gut metagenome; human gut
371
297
-
Glu
TTC
[ENA]
¢þ
>WENV183014743
OLEL01001352
[OLEL] human gut metagenome; human gut
378
451
+
Ile
GAT
[ENA]
¢þ
>WENV183014748
OLEL01001512
[OLEL] human gut metagenome; human gut
379
305
-
Thr
TGT
[ENA]
¢þ
>WENV183014745
OLEL01001373
[OLEL] human gut metagenome; human gut
380
467
+
Ser
TGA
[ENA]
¢þ
>WENV183014727
OLEL01000271
[OLEL] human gut metagenome; human gut
398
323
-
Gly
CCC
[ENA]
¢þ
>WENV183014736
OLEL01000906
[OLEL] human gut metagenome; human gut
449
374
-
Phe
GAA
[ENA]
¢þ
>WENV183014746
OLEL01001373
[OLEL] human gut metagenome; human gut
502
595
+
Ser
GCT
[ENA]
¢þ
>WENV183014744
OLEL01001359
[OLEL] human gut metagenome; human gut
523
447
-
Ile2
CAT
[ENA]
¢þ
>WENV183014735
OLEL01000906
[OLEL] human gut metagenome; human gut
532
456
-
Asp
GTC
[ENA]
¢þ
>WENV183014751
OLEL01002025
[OLEL] human gut metagenome; human gut
624
550
-
Val
TAC
[ENA]
¢þ
>WENV183014734
OLEL01000812
[OLEL] human gut metagenome; human gut
637
727
+
Ser
CGA
[ENA]
¢þ
>WENV183014732
OLEL01000370
[OLEL] human gut metagenome; human gut
692
606
-
Leu
CAG
[ENA]
¢þ
>WENV183014731
OLEL01000369
[OLEL] human gut metagenome; human gut
720
643
-
Arg
CCT
[ENA]
¢þ
>WENV183014724
OLEL01000046
[OLEL] human gut metagenome; human gut
859
944
+
Tyr
GTA
[ENA]
¢þ
>WENV183014733
OLEL01000391
[OLEL] human gut metagenome; human gut
1052
976
-
Pro
GGG
[ENA]
¢þ
>WENV183014730
OLEL01000369
[OLEL] human gut metagenome; human gut
1059
989
-
Gly
TCC
[ENA]
¢þ
>WENV183014728
OLEL01000304
[OLEL] human gut metagenome; human gut
1063
982
-
Leu
TAG
[ENA]
¢þ
>WENV183014729
OLEL01000369
[OLEL] human gut metagenome; human gut
1159
1085
-
Phe
GAA
[ENA]
¢þ
>WENV183014720
OLEL01000008
[OLEL] human gut metagenome; human gut
1343
1268
-
Lys
CTT
[ENA]
¢þ
>WENV183014726
OLEL01000127
[OLEL] human gut metagenome; human gut
1636
1563
-
Pro
CGG
[ENA]
¢þ
>WENV183014725
OLEL01000127
[OLEL] human gut metagenome; human gut
1724
1651
-
Phe
GAA
[ENA]
¢þ
>WENV183014721
OLEL01000026
[OLEL] human gut metagenome; human gut
3533
3461
-
Ala
TGC
[ENA]
¢þ
>WENV183014717
OLEL01000006
[OLEL] human gut metagenome; human gut
3930
3856
-
Ala
TGC
[ENA]
¢þ
>WENV183014716
OLEL01000006
[OLEL] human gut metagenome; human gut
4021
3947
-
Ile
GAT
[ENA]
¢þ
>WENV183014719
OLEL01000008
[OLEL] human gut metagenome; human gut
4769
4693
-
Ile
GAT
[ENA]
¢þ
>WENV183014718
OLEL01000008
[OLEL] human gut metagenome; human gut
4848
4773
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK