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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OLFP] human gut metagenome; human gut
HIT:
134 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183022402
OLFP01006124
[OLFP] human gut metagenome; human gut
3
75
+
Lys
TTT
[ENA]
¢þ
>WENV183022425
OLFP01009399
[OLFP] human gut metagenome; human gut
6
80
+
Phe
GAA
[ENA]
¢þ
>WENV183022426
OLFP01010219
[OLFP] human gut metagenome; human gut
14
96
+
Leu
TAG
[ENA]
¢þ
>WENV183022364
OLFP01002281
[OLFP] human gut metagenome; human gut
64
136
+
Thr
GGT
[ENA]
¢þ
>WENV183022414
OLFP01007925
[OLFP] human gut metagenome; human gut
66
140
+
Ala
TGC
[ENA]
¢þ
>WENV183022389
OLFP01005223
[OLFP] human gut metagenome; human gut
72
-1
-
Thr
CGT
[ENA]
¢þ
>WENV183022385
OLFP01004438
[OLFP] human gut metagenome; human gut
75
1
-
Ile
GAT
[ENA]
¢þ
>WENV183022312
OLFP01000264
[OLFP] human gut metagenome; human gut
85
1
-
Leu
CAA
[ENA]
¢þ
>WENV183022371
OLFP01002550
[OLFP] human gut metagenome; human gut
86
160
+
Ala
TGC
[ENA]
¢þ
>WENV183022400
OLFP01005946
[OLFP] human gut metagenome; human gut
93
168
+
Gly
CCC
[ENA]
¢þ
>WENV183022318
OLFP01000453
[OLFP] human gut metagenome; human gut
102
28
-
Ile2
CAT
[ENA]
¢þ
>WENV183022411
OLFP01007716
[OLFP] human gut metagenome; human gut
111
38
-
Gly
TCC
[ENA]
¢þ
>WENV183022415
OLFP01008355
[OLFP] human gut metagenome; human gut
117
42
-
Thr
CGT
[ENA]
¢þ
>WENV183022401
OLFP01005996
[OLFP] human gut metagenome; human gut
126
215
+
Ser
GCT
[ENA]
¢þ
>WENV183022306
OLFP01000121
[OLFP] human gut metagenome; human gut
132
206
+
Ala
GGC
[ENA]
¢þ
>WENV183022356
OLFP01001394
[OLFP] human gut metagenome; human gut
133
58
-
Val
TAC
[ENA]
¢þ
>WENV183022381
OLFP01003716
[OLFP] human gut metagenome; human gut
155
80
-
Phe
GAA
[ENA]
¢þ
>WENV183022428
OLFP01010261
[OLFP] human gut metagenome; human gut
196
120
-
His
GTG
[ENA]
¢þ
>WENV183022407
OLFP01007232
[OLFP] human gut metagenome; human gut
213
140
-
Lys
CTT
[ENA]
¢þ
>WENV183022405
OLFP01006995
[OLFP] human gut metagenome; human gut
215
140
-
Asn
GTT
[ENA]
¢þ
>WENV183022355
OLFP01001394
[OLFP] human gut metagenome; human gut
216
141
-
Gly
GCC
[ENA]
¢þ
>WENV183022408
OLFP01007425
[OLFP] human gut metagenome; human gut
216
292
+
Met
CAT
[ENA]
¢þ
>WENV183022421
OLFP01009120
[OLFP] human gut metagenome; human gut
241
316
+
Arg
ACG
[ENA]
¢þ
>WENV183022410
OLFP01007716
[OLFP] human gut metagenome; human gut
254
327
+
Gly
CCC
[ENA]
¢þ
>WENV183022317
OLFP01000402
[OLFP] human gut metagenome; human gut
255
326
+
Gln
TTG
[ENA]
¢þ
>WENV183022398
OLFP01005593
[OLFP] human gut metagenome; human gut
258
333
+
Gly
CCC
[ENA]
¢þ
>WENV183022423
OLFP01009170
[OLFP] human gut metagenome; human gut
261
187
-
Arg
CCT
[ENA]
¢þ
>WENV183022424
OLFP01009184
[OLFP] human gut metagenome; human gut
271
197
-
Pro
CGG
[ENA]
¢þ
>WENV183022427
OLFP01010261
[OLFP] human gut metagenome; human gut
279
204
-
Arg
TCT
[ENA]
¢þ
>WENV183022404
OLFP01006995
[OLFP] human gut metagenome; human gut
293
218
-
Phe
GAA
[ENA]
¢þ
>WENV183022412
OLFP01007826
[OLFP] human gut metagenome; human gut
325
411
+
Ser
TGA
[ENA]
¢þ
>WENV183022420
OLFP01008974
[OLFP] human gut metagenome; human gut
342
269
-
Lys
TTT
[ENA]
¢þ
>WENV183022345
OLFP01001166
[OLFP] human gut metagenome; human gut
356
285
-
Cys
GCA
[ENA]
¢þ
>WENV183022417
OLFP01008665
[OLFP] human gut metagenome; human gut
364
440
+
Arg
ACG
[ENA]
¢þ
>WENV183022409
OLFP01007425
[OLFP] human gut metagenome; human gut
384
455
+
Glu
TTC
[ENA]
¢þ
>WENV183022376
OLFP01003133
[OLFP] human gut metagenome; human gut
406
481
+
Ala
TGC
[ENA]
¢þ
>WENV183022403
OLFP01006874
[OLFP] human gut metagenome; human gut
418
492
+
Gly
GCC
[ENA]
¢þ
>WENV183022419
OLFP01008974
[OLFP] human gut metagenome; human gut
425
351
-
Gln
TTG
[ENA]
¢þ
>WENV183022391
OLFP01005267
[OLFP] human gut metagenome; human gut
428
500
+
Asn
GTT
[ENA]
¢þ
>WENV183022422
OLFP01009123
[OLFP] human gut metagenome; human gut
437
512
+
Glu
TTC
[ENA]
¢þ
>WENV183022384
OLFP01004266
[OLFP] human gut metagenome; human gut
445
518
+
Gly
CCC
[ENA]
¢þ
>WENV183022319
OLFP01000458
[OLFP] human gut metagenome; human gut
448
522
+
Pro
GGG
[ENA]
¢þ
>WENV183022367
OLFP01002353
[OLFP] human gut metagenome; human gut
451
375
-
fMet
CAT
[ENA]
¢þ
>WENV183022413
OLFP01007826
[OLFP] human gut metagenome; human gut
458
549
+
Ser
GGA
[ENA]
¢þ
>WENV183022354
OLFP01001394
[OLFP] human gut metagenome; human gut
459
385
-
Asp
GTC
[ENA]
¢þ
>WENV183022377
OLFP01003133
[OLFP] human gut metagenome; human gut
506
582
+
Ile
GAT
[ENA]
¢þ
>WENV183022418
OLFP01008974
[OLFP] human gut metagenome; human gut
507
433
-
His
GTG
[ENA]
¢þ
>WENV183022370
OLFP01002524
[OLFP] human gut metagenome; human gut
510
438
-
Thr
GGT
[ENA]
¢þ
>WENV183022344
OLFP01001166
[OLFP] human gut metagenome; human gut
511
439
-
Asn
GTT
[ENA]
¢þ
>WENV183022392
OLFP01005267
[OLFP] human gut metagenome; human gut
532
603
+
Glu
TTC
[ENA]
¢þ
>WENV183022374
OLFP01003007
[OLFP] human gut metagenome; human gut
544
617
+
Lys
CTT
[ENA]
¢þ
>WENV183022383
OLFP01004226
[OLFP] human gut metagenome; human gut
563
637
+
Asp
GTC
[ENA]
¢þ
>WENV183022416
OLFP01008464
[OLFP] human gut metagenome; human gut
568
495
-
Ile2
CAT
[ENA]
¢þ
>WENV183022386
OLFP01004664
[OLFP] human gut metagenome; human gut
582
509
-
Thr
CGT
[ENA]
¢þ
>WENV183022397
OLFP01005405
[OLFP] human gut metagenome; human gut
596
668
+
Pro
TGG
[ENA]
¢þ
>WENV183022406
OLFP01007018
[OLFP] human gut metagenome; human gut
609
518
-
Ser
GGA
[ENA]
¢þ
>WENV183022369
OLFP01002524
[OLFP] human gut metagenome; human gut
610
527
-
Tyr
GTA
[ENA]
¢þ
>WENV183022324
OLFP01000548
[OLFP] human gut metagenome; human gut
648
721
+
fMet
CAT
[ENA]
¢þ
>WENV183022375
OLFP01003007
[OLFP] human gut metagenome; human gut
649
722
+
Lys
CTT
[ENA]
¢þ
>WENV183022393
OLFP01005267
[OLFP] human gut metagenome; human gut
652
724
+
Thr
TGT
[ENA]
¢þ
>WENV183022358
OLFP01001634
[OLFP] human gut metagenome; human gut
681
753
+
Ala
TGC
[ENA]
¢þ
>WENV183022366
OLFP01002350
[OLFP] human gut metagenome; human gut
689
763
+
Thr
TGT
[ENA]
¢þ
>WENV183022353
OLFP01001394
[OLFP] human gut metagenome; human gut
711
636
-
Trp
CCA
[ENA]
¢þ
>WENV183022373
OLFP01002890
[OLFP] human gut metagenome; human gut
715
633
-
Leu
TAG
[ENA]
¢þ
>WENV183022399
OLFP01005611
[OLFP] human gut metagenome; human gut
716
635
-
Leu
TAG
[ENA]
¢þ
>WENV183022394
OLFP01005267
[OLFP] human gut metagenome; human gut
745
828
+
Tyr
GTA
[ENA]
¢þ
>WENV183022396
OLFP01005400
[OLFP] human gut metagenome; human gut
774
846
+
Arg
CCT
[ENA]
¢þ
>WENV183022343
OLFP01001166
[OLFP] human gut metagenome; human gut
796
724
-
Glu
TTC
[ENA]
¢þ
>WENV183022336
OLFP01000983
[OLFP] human gut metagenome; human gut
845
771
-
Arg
TCT
[ENA]
¢þ
>WENV183022395
OLFP01005267
[OLFP] human gut metagenome; human gut
884
958
+
fMet
CAT
[ENA]
¢þ
>WENV183022346
OLFP01001171
[OLFP] human gut metagenome; human gut
955
1026
+
Gln
TTG
[ENA]
¢þ
>WENV183022382
OLFP01003846
[OLFP] human gut metagenome; human gut
965
887
-
His
GTG
[ENA]
¢þ
>WENV183022379
OLFP01003645
[OLFP] human gut metagenome; human gut
969
894
-
Glu
TTC
[ENA]
¢þ
>WENV183022390
OLFP01005262
[OLFP] human gut metagenome; human gut
1007
934
-
Gly
CCC
[ENA]
¢þ
>WENV183022387
OLFP01004863
[OLFP] human gut metagenome; human gut
1029
943
-
Leu
CAG
[ENA]
¢þ
>WENV183022363
OLFP01002200
[OLFP] human gut metagenome; human gut
1036
1110
+
Met
CAT
[ENA]
¢þ
>WENV183022338
OLFP01001013
[OLFP] human gut metagenome; human gut
1081
1153
+
Cys
GCA
[ENA]
¢þ
>WENV183022388
OLFP01004941
[OLFP] human gut metagenome; human gut
1117
1043
-
Arg
TCT
[ENA]
¢þ
>WENV183022311
OLFP01000259
[OLFP] human gut metagenome; human gut
1148
1219
+
Gln
CTG
[ENA]
¢þ
>WENV183022357
OLFP01001398
[OLFP] human gut metagenome; human gut
1266
1349
+
Leu
TAA
[ENA]
¢þ
>WENV183022322
OLFP01000480
[OLFP] human gut metagenome; human gut
1268
1195
-
Pro
CGG
[ENA]
¢þ
>WENV183022380
OLFP01003664
[OLFP] human gut metagenome; human gut
1313
1239
-
Ile
GAT
[ENA]
¢þ
>WENV183022368
OLFP01002489
[OLFP] human gut metagenome; human gut
1330
1256
-
Asn
GTT
[ENA]
¢þ
>WENV183022321
OLFP01000480
[OLFP] human gut metagenome; human gut
1353
1280
-
Phe
GAA
[ENA]
¢þ
>WENV183022360
OLFP01001673
[OLFP] human gut metagenome; human gut
1376
1449
+
Arg
CCT
[ENA]
¢þ
>WENV183022320
OLFP01000474
[OLFP] human gut metagenome; human gut
1394
1321
-
Trp
CCA
[ENA]
¢þ
>WENV183022365
OLFP01002281
[OLFP] human gut metagenome; human gut
1424
1497
+
Trp
CCA
[ENA]
¢þ
>WENV183022378
OLFP01003530
[OLFP] human gut metagenome; human gut
1476
1402
-
Ala
GGC
[ENA]
¢þ
>WENV183022347
OLFP01001209
[OLFP] human gut metagenome; human gut
1524
1598
+
His
GTG
[ENA]
¢þ
>WENV183022361
OLFP01002038
[OLFP] human gut metagenome; human gut
1526
1450
-
Arg
CCG
[ENA]
¢þ
>WENV183022332
OLFP01000845
[OLFP] human gut metagenome; human gut
1550
1623
+
Lys
CTT
[ENA]
¢þ
>WENV183022325
OLFP01000577
[OLFP] human gut metagenome; human gut
1552
1626
+
Thr
TGT
[ENA]
¢þ
>WENV183022372
OLFP01002737
[OLFP] human gut metagenome; human gut
1598
1673
+
Thr
GGT
[ENA]
¢þ
>WENV183022362
OLFP01002082
[OLFP] human gut metagenome; human gut
1651
1568
-
Leu
GAG
[ENA]
¢þ
>WENV183022349
OLFP01001239
[OLFP] human gut metagenome; human gut
1699
1626
-
Pro
CGG
[ENA]
¢þ
>WENV183022337
OLFP01001004
[OLFP] human gut metagenome; human gut
1744
1817
+
Gly
GCC
[ENA]
¢þ
>WENV183022348
OLFP01001239
[OLFP] human gut metagenome; human gut
1802
1729
-
Gln
CTG
[ENA]
¢þ
>WENV183022303
OLFP01000050
[OLFP] human gut metagenome; human gut
1886
1804
-
Leu
TAG
[ENA]
¢þ
>WENV183022334
OLFP01000942
[OLFP] human gut metagenome; human gut
1910
1984
+
Asp
GTC
[ENA]
¢þ
>WENV183022327
OLFP01000639
[OLFP] human gut metagenome; human gut
2096
2022
-
Ile2
CAT
[ENA]
¢þ
>WENV183022352
OLFP01001363
[OLFP] human gut metagenome; human gut
2112
2200
+
Ser
GGA
[ENA]
¢þ
>WENV183022335
OLFP01000947
[OLFP] human gut metagenome; human gut
2245
2172
-
Lys
TTT
[ENA]
¢þ
>WENV183022342
OLFP01001166
[OLFP] human gut metagenome; human gut
2246
2160
-
Leu
TAA
[ENA]
¢þ
>WENV183022333
OLFP01000907
[OLFP] human gut metagenome; human gut
2282
2356
+
His
GTG
[ENA]
¢þ
>WENV183022359
OLFP01001653
[OLFP] human gut metagenome; human gut
2519
2444
-
Ile2
CAT
[ENA]
¢þ
>WENV183022326
OLFP01000636
[OLFP] human gut metagenome; human gut
2676
2749
+
fMet
CAT
[ENA]
¢þ
>WENV183022323
OLFP01000526
[OLFP] human gut metagenome; human gut
2951
2878
-
Lys
TTT
[ENA]
¢þ
>WENV183022328
OLFP01000640
[OLFP] human gut metagenome; human gut
3045
2973
-
Glu
TTC
[ENA]
¢þ
>WENV183022351
OLFP01001361
[OLFP] human gut metagenome; human gut
3068
2993
-
Thr
CGT
[ENA]
¢þ
>WENV183022297
OLFP01000027
[OLFP] human gut metagenome; human gut
3198
3127
-
Gln
CTG
[ENA]
¢þ
>WENV183022350
OLFP01001338
[OLFP] human gut metagenome; human gut
3308
3233
-
Val
TAC
[ENA]
¢þ
>WENV183022340
OLFP01001104
[OLFP] human gut metagenome; human gut
3417
3491
+
Glu
CTC
[ENA]
¢þ
>WENV183022341
OLFP01001104
[OLFP] human gut metagenome; human gut
3495
3568
+
Lys
CTT
[ENA]
¢þ
>WENV183022329
OLFP01000653
[OLFP] human gut metagenome; human gut
3507
3578
+
Gln
TTG
[ENA]
¢þ
>WENV183022339
OLFP01001094
[OLFP] human gut metagenome; human gut
3531
3456
-
Val
GAC
[ENA]
¢þ
>WENV183022330
OLFP01000682
[OLFP] human gut metagenome; human gut
4139
4067
-
Cys
GCA
[ENA]
¢þ
>WENV183022307
OLFP01000140
[OLFP] human gut metagenome; human gut
4252
4167
-
Ser
TGA
[ENA]
¢þ
>WENV183022315
OLFP01000359
[OLFP] human gut metagenome; human gut
4384
4469
+
Ser
TGA
[ENA]
¢þ
>WENV183022331
OLFP01000794
[OLFP] human gut metagenome; human gut
4464
4380
-
Leu
TAA
[ENA]
¢þ
>WENV183022308
OLFP01000157
[OLFP] human gut metagenome; human gut
4497
4580
+
Tyr
GTA
[ENA]
¢þ
>WENV183022316
OLFP01000385
[OLFP] human gut metagenome; human gut
5105
5178
+
Phe
GAA
[ENA]
¢þ
>WENV183022313
OLFP01000341
[OLFP] human gut metagenome; human gut
5193
5280
+
Ser
TGA
[ENA]
¢þ
>WENV183022314
OLFP01000341
[OLFP] human gut metagenome; human gut
5313
5406
+
Ser
GCT
[ENA]
¢þ
>WENV183022309
OLFP01000178
[OLFP] human gut metagenome; human gut
5449
5528
+
Leu
CAA
[ENA]
¢þ
>WENV183022295
OLFP01000001
[OLFP] human gut metagenome; human gut
5493
5565
+
Arg
CCT
[ENA]
¢þ
>WENV183022305
OLFP01000106
[OLFP] human gut metagenome; human gut
5513
5585
+
Glu
TTC
[ENA]
¢þ
>WENV183022300
OLFP01000045
[OLFP] human gut metagenome; human gut
5856
5943
+
Ser
GCT
[ENA]
¢þ
>WENV183022310
OLFP01000224
[OLFP] human gut metagenome; human gut
5977
6050
+
Phe
GAA
[ENA]
¢þ
>WENV183022301
OLFP01000045
[OLFP] human gut metagenome; human gut
6021
6093
+
Glu
CTC
[ENA]
¢þ
>WENV183022296
OLFP01000016
[OLFP] human gut metagenome; human gut
8361
8276
-
Ser
TGA
[ENA]
¢þ
>WENV183022304
OLFP01000059
[OLFP] human gut metagenome; human gut
10765
10841
+
Met
CAT
[ENA]
¢þ
>WENV183022299
OLFP01000037
[OLFP] human gut metagenome; human gut
12956
13027
+
Gln
TTG
[ENA]
¢þ
>WENV183022302
OLFP01000048
[OLFP] human gut metagenome; human gut
14821
14746
-
Pro
GGG
[ENA]
¢þ
>WENV183022298
OLFP01000030
[OLFP] human gut metagenome; human gut
16642
16716
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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