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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OLGQ] seawater metagenome; Sea water
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183053742
OLGQ01001992
[OLGQ] seawater metagenome; Sea water
49
125
+
Ile
GAT
[ENA]
¢þ
>WENV183053741
OLGQ01001919
[OLGQ] seawater metagenome; Sea water
63
136
+
Gly
TCC
[ENA]
¢þ
>WENV183053722
OLGQ01000833
[OLGQ] seawater metagenome; Sea water
71
147
+
Trp
CCA
[ENA]
¢þ
>WENV183053754
OLGQ01002940
[OLGQ] seawater metagenome; Sea water
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV183053723
OLGQ01000990
[OLGQ] seawater metagenome; Sea water
87
162
+
Ala
TGC
[ENA]
¢þ
>WENV183053748
OLGQ01002627
[OLGQ] seawater metagenome; Sea water
90
14
-
Arg
ACG
[ENA]
¢þ
>WENV183053755
OLGQ01003252
[OLGQ] seawater metagenome; Sea water
104
179
+
Val
TAC
[ENA]
¢þ
>WENV183053733
OLGQ01001760
[OLGQ] seawater metagenome; Sea water
116
192
+
fMet
CAT
[ENA]
¢þ
>WENV183053758
OLGQ01003302
[OLGQ] seawater metagenome; Sea water
135
219
+
Tyr
GTA
[ENA]
¢þ
>WENV183053743
OLGQ01001992
[OLGQ] seawater metagenome; Sea water
144
219
+
Ala
TGC
[ENA]
¢þ
>WENV183053744
OLGQ01002467
[OLGQ] seawater metagenome; Sea water
165
240
+
Ala
GGC
[ENA]
¢þ
>WENV183053721
OLGQ01000356
[OLGQ] seawater metagenome; Sea water
175
100
-
Lys
TTT
[ENA]
¢þ
>WENV183053751
OLGQ01002887
[OLGQ] seawater metagenome; Sea water
195
120
-
Ala
TGC
[ENA]
¢þ
>WENV183053734
OLGQ01001760
[OLGQ] seawater metagenome; Sea water
197
273
+
Asp
GTC
[ENA]
¢þ
>WENV183053756
OLGQ01003252
[OLGQ] seawater metagenome; Sea water
229
305
+
Asp
GTC
[ENA]
¢þ
>WENV183053731
OLGQ01001145
[OLGQ] seawater metagenome; Sea water
237
163
-
Gly
GCC
[ENA]
¢þ
>WENV183053759
OLGQ01003302
[OLGQ] seawater metagenome; Sea water
249
323
+
Gly
TCC
[ENA]
¢þ
>WENV183053762
OLGQ01003505
[OLGQ] seawater metagenome; Sea water
275
200
-
Thr
GGT
[ENA]
¢þ
>WENV183053735
OLGQ01001760
[OLGQ] seawater metagenome; Sea water
287
361
+
Thr
TGT
[ENA]
¢þ
>WENV183053760
OLGQ01003302
[OLGQ] seawater metagenome; Sea water
339
414
+
Thr
GGT
[ENA]
¢þ
>WENV183053761
OLGQ01003505
[OLGQ] seawater metagenome; Sea water
355
282
-
Gly
TCC
[ENA]
¢þ
>WENV183053745
OLGQ01002467
[OLGQ] seawater metagenome; Sea water
364
439
+
Glu
TTC
[ENA]
¢þ
>WENV183053747
OLGQ01002627
[OLGQ] seawater metagenome; Sea water
367
291
-
Arg
GCG
[ENA]
¢þ
>WENV183053757
OLGQ01003252
[OLGQ] seawater metagenome; Sea water
371
446
+
Val
TAC
[ENA]
¢þ
>WENV183053736
OLGQ01001760
[OLGQ] seawater metagenome; Sea water
379
454
+
His
GTG
[ENA]
¢þ
>WENV183053717
OLGQ01000101
[OLGQ] seawater metagenome; Sea water
383
307
-
Pro
GGG
[ENA]
¢þ
>WENV183053750
OLGQ01002887
[OLGQ] seawater metagenome; Sea water
384
308
-
Ile
GAT
[ENA]
¢þ
>WENV183053730
OLGQ01001145
[OLGQ] seawater metagenome; Sea water
388
313
-
Glu
TTC
[ENA]
¢þ
>WENV183053753
OLGQ01002940
[OLGQ] seawater metagenome; Sea water
417
341
-
Pro
TGG
[ENA]
¢þ
>WENV183053737
OLGQ01001760
[OLGQ] seawater metagenome; Sea water
466
540
+
Gln
TTG
[ENA]
¢þ
>WENV183053716
OLGQ01000064
[OLGQ] seawater metagenome; Sea water
480
554
+
Gln
TTG
[ENA]
¢þ
>WENV183053724
OLGQ01001126
[OLGQ] seawater metagenome; Sea water
499
583
+
Leu
GAG
[ENA]
¢þ
>WENV183053752
OLGQ01002940
[OLGQ] seawater metagenome; Sea water
524
449
-
His
GTG
[ENA]
¢þ
>WENV183053729
OLGQ01001145
[OLGQ] seawater metagenome; Sea water
528
454
-
Gly
GCC
[ENA]
¢þ
>WENV183053738
OLGQ01001760
[OLGQ] seawater metagenome; Sea water
548
622
+
Gly
GCC
[ENA]
¢þ
>WENV183053749
OLGQ01002721
[OLGQ] seawater metagenome; Sea water
569
493
-
Ile2
CAT
[ENA]
¢þ
>WENV183053746
OLGQ01002467
[OLGQ] seawater metagenome; Sea water
585
660
+
Glu
TTC
[ENA]
¢þ
>WENV183053739
OLGQ01001760
[OLGQ] seawater metagenome; Sea water
632
705
+
Cys
GCA
[ENA]
¢þ
>WENV183053725
OLGQ01001126
[OLGQ] seawater metagenome; Sea water
637
713
+
fMet
CAT
[ENA]
¢þ
>WENV183053732
OLGQ01001365
[OLGQ] seawater metagenome; Sea water
655
742
+
Ser
GGA
[ENA]
¢þ
>WENV183053728
OLGQ01001145
[OLGQ] seawater metagenome; Sea water
679
604
-
Glu
TTC
[ENA]
¢þ
>WENV183053740
OLGQ01001760
[OLGQ] seawater metagenome; Sea water
719
795
+
Arg
GCG
[ENA]
¢þ
>WENV183053726
OLGQ01001126
[OLGQ] seawater metagenome; Sea water
773
848
+
Gly
GCC
[ENA]
¢þ
>WENV183053727
OLGQ01001145
[OLGQ] seawater metagenome; Sea water
872
797
-
Ala
GGC
[ENA]
¢þ
>WENV183053720
OLGQ01000292
[OLGQ] seawater metagenome; Sea water
975
891
-
Ala
AGC
[ENA]
¢þ
>WENV183053719
OLGQ01000198
[OLGQ] seawater metagenome; Sea water
2011
2100
+
Ser
GCT
[ENA]
¢þ
>WENV183053718
OLGQ01000135
[OLGQ] seawater metagenome; Sea water
2593
2668
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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