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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLJQ] human gut metagenome; human gut
HIT:
125 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183087976
OLJQ01001507
[OLJQ] human gut metagenome; human gut
64
139
+
Asp
GTC
[ENA]
¢þ
>WENV183087939
OLJQ01000055
[OLJQ] human gut metagenome; human gut
85
9
-
Arg
ACG
[ENA]
¢þ
>WENV183087999
OLJQ01002761
[OLJQ] human gut metagenome; human gut
98
171
+
Trp
CCA
[ENA]
¢þ
>WENV183087927
OLJQ01000027
[OLJQ] human gut metagenome; human gut
99
174
+
Trp
CCA
[ENA]
¢þ
>WENV183087907
OLJQ01000008
[OLJQ] human gut metagenome; human gut
105
181
+
Asp
GTC
[ENA]
¢þ
>WENV183087957
OLJQ01000607
[OLJQ] human gut metagenome; human gut
115
40
-
Arg
CCG
[ENA]
¢þ
>WENV183087979
OLJQ01001515
[OLJQ] human gut metagenome; human gut
146
74
-
Gln
TTG
[ENA]
¢þ
>WENV183087900
OLJQ01000002
[OLJQ] human gut metagenome; human gut
150
76
-
Gln
TTG
[ENA]
¢þ
>WENV183087950
OLJQ01000176
[OLJQ] human gut metagenome; human gut
155
79
-
Arg
ACG
[ENA]
¢þ
>WENV183088006
OLJQ01003150
[OLJQ] human gut metagenome; human gut
165
76
-
Ser
GCT
[ENA]
¢þ
>WENV183088011
OLJQ01003823
[OLJQ] human gut metagenome; human gut
173
247
+
Gly
TCC
[ENA]
¢þ
>WENV183088008
OLJQ01003433
[OLJQ] human gut metagenome; human gut
181
275
+
SeC
TCA
[ENA]
¢þ
>WENV183087938
OLJQ01000055
[OLJQ] human gut metagenome; human gut
182
90
-
Ser
GCT
[ENA]
¢þ
>WENV183087977
OLJQ01001507
[OLJQ] human gut metagenome; human gut
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV183088015
OLJQ01004048
[OLJQ] human gut metagenome; human gut
219
294
+
Ala
GGC
[ENA]
¢þ
>WENV183087954
OLJQ01000502
[OLJQ] human gut metagenome; human gut
222
147
-
Thr
TGT
[ENA]
¢þ
>WENV183087971
OLJQ01001315
[OLJQ] human gut metagenome; human gut
224
149
-
Arg
TCT
[ENA]
¢þ
>WENV183087959
OLJQ01000626
[OLJQ] human gut metagenome; human gut
241
168
-
Glu
CTC
[ENA]
¢þ
>WENV183088005
OLJQ01003150
[OLJQ] human gut metagenome; human gut
249
174
-
Ile
GAT
[ENA]
¢þ
>WENV183088012
OLJQ01003823
[OLJQ] human gut metagenome; human gut
253
328
+
Thr
GGT
[ENA]
¢þ
>WENV183087949
OLJQ01000176
[OLJQ] human gut metagenome; human gut
256
168
-
Leu
TAA
[ENA]
¢þ
>WENV183087978
OLJQ01001507
[OLJQ] human gut metagenome; human gut
262
344
+
Tyr
GTA
[ENA]
¢þ
>WENV183087899
OLJQ01000002
[OLJQ] human gut metagenome; human gut
269
185
-
Leu
TAG
[ENA]
¢þ
>WENV183088014
OLJQ01003911
[OLJQ] human gut metagenome; human gut
279
204
-
Ala
TGC
[ENA]
¢þ
>WENV183087967
OLJQ01001047
[OLJQ] human gut metagenome; human gut
282
192
-
Ser
GCT
[ENA]
¢þ
>WENV183088004
OLJQ01003150
[OLJQ] human gut metagenome; human gut
328
258
-
Gly
TCC
[ENA]
¢þ
>WENV183087948
OLJQ01000176
[OLJQ] human gut metagenome; human gut
342
268
-
Gly
GCC
[ENA]
¢þ
>WENV183087982
OLJQ01001745
[OLJQ] human gut metagenome; human gut
342
416
+
Lys
CTT
[ENA]
¢þ
>WENV183087898
OLJQ01000002
[OLJQ] human gut metagenome; human gut
354
278
-
Met
CAT
[ENA]
¢þ
>WENV183087998
OLJQ01002688
[OLJQ] human gut metagenome; human gut
374
303
-
Trp
CCA
[ENA]
¢þ
>WENV183087958
OLJQ01000626
[OLJQ] human gut metagenome; human gut
389
317
-
Gln
CTG
[ENA]
¢þ
>WENV183088003
OLJQ01003150
[OLJQ] human gut metagenome; human gut
406
330
-
Asp
GTC
[ENA]
¢þ
>WENV183087981
OLJQ01001564
[OLJQ] human gut metagenome; human gut
409
497
+
Ser
TGA
[ENA]
¢þ
>WENV183088009
OLJQ01003519
[OLJQ] human gut metagenome; human gut
424
498
+
Asp
GTC
[ENA]
¢þ
>WENV183087947
OLJQ01000176
[OLJQ] human gut metagenome; human gut
434
360
-
Lys
TTT
[ENA]
¢þ
>WENV183087972
OLJQ01001344
[OLJQ] human gut metagenome; human gut
436
509
+
Glu
TTC
[ENA]
¢þ
>WENV183088013
OLJQ01003911
[OLJQ] human gut metagenome; human gut
463
387
-
Ile
GAT
[ENA]
¢þ
>WENV183087994
OLJQ01002574
[OLJQ] human gut metagenome; human gut
479
553
+
Ile
GAT
[ENA]
¢þ
>WENV183087946
OLJQ01000176
[OLJQ] human gut metagenome; human gut
515
440
-
Thr
TGT
[ENA]
¢þ
>WENV183087997
OLJQ01002674
[OLJQ] human gut metagenome; human gut
517
443
-
Arg
TCT
[ENA]
¢þ
>WENV183088010
OLJQ01003519
[OLJQ] human gut metagenome; human gut
517
590
+
Phe
GAA
[ENA]
¢þ
>WENV183088002
OLJQ01003150
[OLJQ] human gut metagenome; human gut
519
444
-
fMet
CAT
[ENA]
¢þ
>WENV183088007
OLJQ01003160
[OLJQ] human gut metagenome; human gut
580
654
+
Asn
GTT
[ENA]
¢þ
>WENV183087945
OLJQ01000176
[OLJQ] human gut metagenome; human gut
597
523
-
Phe
GAA
[ENA]
¢þ
>WENV183087952
OLJQ01000381
[OLJQ] human gut metagenome; human gut
603
685
+
Leu
CAA
[ENA]
¢þ
>WENV183087983
OLJQ01001749
[OLJQ] human gut metagenome; human gut
611
685
+
Val
TAC
[ENA]
¢þ
>WENV183087940
OLJQ01000113
[OLJQ] human gut metagenome; human gut
636
711
+
Val
TAC
[ENA]
¢þ
>WENV183088001
OLJQ01003150
[OLJQ] human gut metagenome; human gut
641
552
-
Ser
TGA
[ENA]
¢þ
>WENV183087984
OLJQ01001749
[OLJQ] human gut metagenome; human gut
690
764
+
Lys
TTT
[ENA]
¢þ
>WENV183087995
OLJQ01002574
[OLJQ] human gut metagenome; human gut
708
781
+
Ala
TGC
[ENA]
¢þ
>WENV183088000
OLJQ01003080
[OLJQ] human gut metagenome; human gut
716
643
-
Ala
CGC
[ENA]
¢þ
>WENV183087941
OLJQ01000113
[OLJQ] human gut metagenome; human gut
716
791
+
Lys
TTT
[ENA]
¢þ
>WENV183087996
OLJQ01002598
[OLJQ] human gut metagenome; human gut
748
673
-
Ala
TGC
[ENA]
¢þ
>WENV183087944
OLJQ01000176
[OLJQ] human gut metagenome; human gut
774
701
-
fMet
CAT
[ENA]
¢þ
>WENV183087985
OLJQ01001749
[OLJQ] human gut metagenome; human gut
779
862
+
Leu
TAG
[ENA]
¢þ
>WENV183087990
OLJQ01001788
[OLJQ] human gut metagenome; human gut
806
719
-
Leu
GAG
[ENA]
¢þ
>WENV183087993
OLJQ01002374
[OLJQ] human gut metagenome; human gut
854
781
-
Arg
TCT
[ENA]
¢þ
>WENV183087986
OLJQ01001749
[OLJQ] human gut metagenome; human gut
868
943
+
Thr
TGT
[ENA]
¢þ
>WENV183087943
OLJQ01000176
[OLJQ] human gut metagenome; human gut
878
786
-
Ser
TGA
[ENA]
¢þ
>WENV183087965
OLJQ01000862
[OLJQ] human gut metagenome; human gut
947
1020
+
Gly
CCC
[ENA]
¢þ
>WENV183087987
OLJQ01001749
[OLJQ] human gut metagenome; human gut
948
1019
+
Gly
GCC
[ENA]
¢þ
>WENV183087992
OLJQ01002279
[OLJQ] human gut metagenome; human gut
999
926
-
Pro
TGG
[ENA]
¢þ
>WENV183087973
OLJQ01001377
[OLJQ] human gut metagenome; human gut
1035
1117
+
Tyr
GTA
[ENA]
¢þ
>WENV183087988
OLJQ01001749
[OLJQ] human gut metagenome; human gut
1035
1120
+
Leu
TAA
[ENA]
¢þ
>WENV183087991
OLJQ01001811
[OLJQ] human gut metagenome; human gut
1077
1152
+
Thr
CGT
[ENA]
¢þ
>WENV183087980
OLJQ01001534
[OLJQ] human gut metagenome; human gut
1118
1033
-
Ser
GGA
[ENA]
¢þ
>WENV183087989
OLJQ01001749
[OLJQ] human gut metagenome; human gut
1135
1208
+
Arg
ACG
[ENA]
¢þ
>WENV183087937
OLJQ01000054
[OLJQ] human gut metagenome; human gut
1139
1055
-
Leu
CAA
[ENA]
¢þ
>WENV183087974
OLJQ01001377
[OLJQ] human gut metagenome; human gut
1212
1285
+
Thr
GGT
[ENA]
¢þ
>WENV183087975
OLJQ01001414
[OLJQ] human gut metagenome; human gut
1392
1474
+
Leu
TAG
[ENA]
¢þ
>WENV183087960
OLJQ01000659
[OLJQ] human gut metagenome; human gut
1523
1596
+
Arg
CCT
[ENA]
¢þ
>WENV183087970
OLJQ01001066
[OLJQ] human gut metagenome; human gut
1542
1615
+
Arg
CCG
[ENA]
¢þ
>WENV183087910
OLJQ01000011
[OLJQ] human gut metagenome; human gut
1612
1536
-
Arg
TCT
[ENA]
¢þ
>WENV183087969
OLJQ01001056
[OLJQ] human gut metagenome; human gut
1625
1552
-
Arg
ACG
[ENA]
¢þ
>WENV183087968
OLJQ01001056
[OLJQ] human gut metagenome; human gut
1720
1629
-
Ser
GCT
[ENA]
¢þ
>WENV183087964
OLJQ01000859
[OLJQ] human gut metagenome; human gut
1818
1743
-
Gly
GCC
[ENA]
¢þ
>WENV183087966
OLJQ01000872
[OLJQ] human gut metagenome; human gut
1873
1946
+
Leu
TAA
[ENA]
¢þ
>WENV183087963
OLJQ01000859
[OLJQ] human gut metagenome; human gut
1891
1819
-
Val
CAC
[ENA]
¢þ
>WENV183087951
OLJQ01000214
[OLJQ] human gut metagenome; human gut
1945
2021
+
fMet
CAT
[ENA]
¢þ
>WENV183087962
OLJQ01000667
[OLJQ] human gut metagenome; human gut
2130
2056
-
Pro
TGG
[ENA]
¢þ
>WENV183087961
OLJQ01000667
[OLJQ] human gut metagenome; human gut
2331
2404
+
Gly
TCC
[ENA]
¢þ
>WENV183087956
OLJQ01000606
[OLJQ] human gut metagenome; human gut
2543
2629
+
Leu
GAG
[ENA]
¢þ
>WENV183087955
OLJQ01000576
[OLJQ] human gut metagenome; human gut
2632
2706
+
Pro
GGG
[ENA]
¢þ
>WENV183087936
OLJQ01000041
[OLJQ] human gut metagenome; human gut
2802
2889
+
Ser
GGA
[ENA]
¢þ
>WENV183087953
OLJQ01000384
[OLJQ] human gut metagenome; human gut
3226
3151
-
Arg
CCT
[ENA]
¢þ
>WENV183087925
OLJQ01000025
[OLJQ] human gut metagenome; human gut
3613
3688
+
Thr
TGT
[ENA]
¢þ
>WENV183087926
OLJQ01000025
[OLJQ] human gut metagenome; human gut
3699
3783
+
Tyr
GTA
[ENA]
¢þ
>WENV183087922
OLJQ01000018
[OLJQ] human gut metagenome; human gut
3796
3721
-
Asn
GTT
[ENA]
¢þ
>WENV183087942
OLJQ01000116
[OLJQ] human gut metagenome; human gut
5325
5250
-
Arg
ACG
[ENA]
¢þ
>WENV183087908
OLJQ01000008
[OLJQ] human gut metagenome; human gut
9536
9612
+
Asp
GTC
[ENA]
¢þ
>WENV183087921
OLJQ01000018
[OLJQ] human gut metagenome; human gut
12705
12630
-
Asn
GTT
[ENA]
¢þ
>WENV183087915
OLJQ01000018
[OLJQ] human gut metagenome; human gut
14483
14558
+
Asn
GTT
[ENA]
¢þ
>WENV183087920
OLJQ01000018
[OLJQ] human gut metagenome; human gut
34872
34797
-
Asn
GTT
[ENA]
¢þ
>WENV183087916
OLJQ01000018
[OLJQ] human gut metagenome; human gut
35864
35953
+
Ser
CGA
[ENA]
¢þ
>WENV183087928
OLJQ01000027
[OLJQ] human gut metagenome; human gut
42172
42248
+
Arg
CCG
[ENA]
¢þ
>WENV183087929
OLJQ01000027
[OLJQ] human gut metagenome; human gut
42304
42379
+
His
GTG
[ENA]
¢þ
>WENV183087930
OLJQ01000027
[OLJQ] human gut metagenome; human gut
42402
42488
+
Leu
CAG
[ENA]
¢þ
>WENV183087931
OLJQ01000027
[OLJQ] human gut metagenome; human gut
42534
42610
+
Pro
TGG
[ENA]
¢þ
>WENV183087891
OLJQ01000001
[OLJQ] human gut metagenome; human gut
50884
50970
+
Leu
GAG
[ENA]
¢þ
>WENV183087914
OLJQ01000016
[OLJQ] human gut metagenome; human gut
51266
51352
+
Leu
CAG
[ENA]
¢þ
>WENV183087892
OLJQ01000001
[OLJQ] human gut metagenome; human gut
52773
52849
+
fMet
CAT
[ENA]
¢þ
>WENV183087917
OLJQ01000018
[OLJQ] human gut metagenome; human gut
61023
61098
+
Gly
GCC
[ENA]
¢þ
>WENV183087918
OLJQ01000018
[OLJQ] human gut metagenome; human gut
61137
61210
+
Cys
GCA
[ENA]
¢þ
>WENV183087919
OLJQ01000018
[OLJQ] human gut metagenome; human gut
61224
61310
+
Leu
TAA
[ENA]
¢þ
>WENV183087932
OLJQ01000029
[OLJQ] human gut metagenome; human gut
68443
68356
-
Ser
TGA
[ENA]
¢þ
>WENV183087901
OLJQ01000003
[OLJQ] human gut metagenome; human gut
69988
70064
+
Pro
GGG
[ENA]
¢þ
>WENV183087913
OLJQ01000013
[OLJQ] human gut metagenome; human gut
70248
70172
-
Val
GAC
[ENA]
¢þ
>WENV183087912
OLJQ01000013
[OLJQ] human gut metagenome; human gut
70329
70253
-
Val
GAC
[ENA]
¢þ
>WENV183087924
OLJQ01000022
[OLJQ] human gut metagenome; human gut
80753
80680
-
Gly
CCC
[ENA]
¢þ
>WENV183087935
OLJQ01000031
[OLJQ] human gut metagenome; human gut
85800
85726
-
Gln
CTG
[ENA]
¢þ
>WENV183087934
OLJQ01000031
[OLJQ] human gut metagenome; human gut
85972
85898
-
Gln
CTG
[ENA]
¢þ
>WENV183087933
OLJQ01000031
[OLJQ] human gut metagenome; human gut
86094
86018
-
Met
CAT
[ENA]
¢þ
>WENV183087895
OLJQ01000002
[OLJQ] human gut metagenome; human gut
87140
87215
+
Lys
TTT
[ENA]
¢þ
>WENV183087896
OLJQ01000002
[OLJQ] human gut metagenome; human gut
87343
87418
+
Val
TAC
[ENA]
¢þ
>WENV183087897
OLJQ01000002
[OLJQ] human gut metagenome; human gut
87423
87498
+
Lys
TTT
[ENA]
¢þ
>WENV183087923
OLJQ01000019
[OLJQ] human gut metagenome; human gut
122483
122577
+
SeC
TCA
[ENA]
¢þ
>WENV183087909
OLJQ01000008
[OLJQ] human gut metagenome; human gut
125938
125866
-
Thr
CGT
[ENA]
¢þ
>WENV183087911
OLJQ01000012
[OLJQ] human gut metagenome; human gut
137497
137421
-
Pro
CGG
[ENA]
¢þ
>WENV183087905
OLJQ01000006
[OLJQ] human gut metagenome; human gut
143651
143576
-
Phe
GAA
[ENA]
¢þ
>WENV183087906
OLJQ01000007
[OLJQ] human gut metagenome; human gut
151349
151425
+
fMet
CAT
[ENA]
¢þ
>WENV183087894
OLJQ01000001
[OLJQ] human gut metagenome; human gut
155728
155653
-
Ile2
CAT
[ENA]
¢þ
>WENV183087904
OLJQ01000006
[OLJQ] human gut metagenome; human gut
184381
184456
+
Gly
GCC
[ENA]
¢þ
>WENV183087902
OLJQ01000003
[OLJQ] human gut metagenome; human gut
210390
210462
+
Arg
CCT
[ENA]
¢þ
>WENV183087903
OLJQ01000003
[OLJQ] human gut metagenome; human gut
231412
231337
-
Ala
GGC
[ENA]
¢þ
>WENV183087893
OLJQ01000001
[OLJQ] human gut metagenome; human gut
233300
233225
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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