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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLJR] human gut metagenome; human gut
HIT:
81 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183088047
OLJR01000071
[OLJR] human gut metagenome; human gut
6
100
+
SeC
TCA
[ENA]
¢þ
>WENV183088069
OLJR01000178
[OLJR] human gut metagenome; human gut
7
82
+
Ile2
CAT
[ENA]
¢þ
>WENV183088054
OLJR01000154
[OLJR] human gut metagenome; human gut
85
10
-
Thr
CGT
[ENA]
¢þ
>WENV183088093
OLJR01002241
[OLJR] human gut metagenome; human gut
102
178
+
Ile
GAT
[ENA]
¢þ
>WENV183088024
OLJR01000018
[OLJR] human gut metagenome; human gut
107
181
+
Gln
CTG
[ENA]
¢þ
>WENV183088095
OLJR01002269
[OLJR] human gut metagenome; human gut
207
131
-
Ile2
CAT
[ENA]
¢þ
>WENV183088094
OLJR01002241
[OLJR] human gut metagenome; human gut
218
293
+
Ala
TGC
[ENA]
¢þ
>WENV183088025
OLJR01000018
[OLJR] human gut metagenome; human gut
279
353
+
Gln
CTG
[ENA]
¢þ
>WENV183088096
OLJR01002536
[OLJR] human gut metagenome; human gut
383
308
-
Thr
TGT
[ENA]
¢þ
>WENV183088046
OLJR01000070
[OLJR] human gut metagenome; human gut
835
910
+
Phe
GAA
[ENA]
¢þ
>WENV183088032
OLJR01000032
[OLJR] human gut metagenome; human gut
1140
1065
-
Asn
GTT
[ENA]
¢þ
>WENV183088087
OLJR01000744
[OLJR] human gut metagenome; human gut
1160
1084
-
Arg
TCT
[ENA]
¢þ
>WENV183088074
OLJR01000434
[OLJR] human gut metagenome; human gut
1932
1846
-
Leu
GAG
[ENA]
¢þ
>WENV183088075
OLJR01000437
[OLJR] human gut metagenome; human gut
2259
2172
-
Ser
TGA
[ENA]
¢þ
>WENV183088090
OLJR01000907
[OLJR] human gut metagenome; human gut
2548
2622
+
Asn
GTT
[ENA]
¢þ
>WENV183088083
OLJR01000632
[OLJR] human gut metagenome; human gut
2583
2510
-
Gly
CCC
[ENA]
¢þ
>WENV183088091
OLJR01000907
[OLJR] human gut metagenome; human gut
2628
2702
+
Gly
TCC
[ENA]
¢þ
>WENV183088092
OLJR01000907
[OLJR] human gut metagenome; human gut
2708
2782
+
Thr
TGT
[ENA]
¢þ
>WENV183088089
OLJR01000894
[OLJR] human gut metagenome; human gut
2747
2822
+
Val
TAC
[ENA]
¢þ
>WENV183088088
OLJR01000837
[OLJR] human gut metagenome; human gut
2861
2790
-
Arg
CCG
[ENA]
¢þ
>WENV183088029
OLJR01000032
[OLJR] human gut metagenome; human gut
2917
2992
+
Asn
GTT
[ENA]
¢þ
>WENV183088071
OLJR01000189
[OLJR] human gut metagenome; human gut
3360
3285
-
Phe
GAA
[ENA]
¢þ
>WENV183088084
OLJR01000664
[OLJR] human gut metagenome; human gut
3573
3648
+
Thr
TGT
[ENA]
¢þ
>WENV183088085
OLJR01000664
[OLJR] human gut metagenome; human gut
3659
3743
+
Tyr
GTA
[ENA]
¢þ
>WENV183088086
OLJR01000664
[OLJR] human gut metagenome; human gut
3863
3937
+
Gly
TCC
[ENA]
¢þ
>WENV183088040
OLJR01000057
[OLJR] human gut metagenome; human gut
3924
3849
-
Asn
GTT
[ENA]
¢þ
>WENV183088073
OLJR01000367
[OLJR] human gut metagenome; human gut
4097
4013
-
Leu
CAA
[ENA]
¢þ
>WENV183088053
OLJR01000149
[OLJR] human gut metagenome; human gut
4313
4226
-
Ser
GGA
[ENA]
¢þ
>WENV183088076
OLJR01000507
[OLJR] human gut metagenome; human gut
4617
4709
+
Ser
TGA
[ENA]
¢þ
>WENV183088077
OLJR01000507
[OLJR] human gut metagenome; human gut
4721
4794
+
fMet
CAT
[ENA]
¢þ
>WENV183088078
OLJR01000507
[OLJR] human gut metagenome; human gut
4809
4884
+
Asp
GTC
[ENA]
¢þ
>WENV183088079
OLJR01000507
[OLJR] human gut metagenome; human gut
4894
4968
+
Phe
GAA
[ENA]
¢þ
>WENV183088080
OLJR01000507
[OLJR] human gut metagenome; human gut
4981
5056
+
His
GTG
[ENA]
¢þ
>WENV183088081
OLJR01000507
[OLJR] human gut metagenome; human gut
5074
5147
+
Gly
TCC
[ENA]
¢þ
>WENV183088082
OLJR01000510
[OLJR] human gut metagenome; human gut
5173
5079
-
SeC
TCA
[ENA]
¢þ
>WENV183088070
OLJR01000187
[OLJR] human gut metagenome; human gut
5208
5133
-
Phe
GAA
[ENA]
¢þ
>WENV183088050
OLJR01000088
[OLJR] human gut metagenome; human gut
5535
5608
+
Gly
CCC
[ENA]
¢þ
>WENV183088068
OLJR01000177
[OLJR] human gut metagenome; human gut
6622
6547
-
Ala
TGC
[ENA]
¢þ
>WENV183088067
OLJR01000177
[OLJR] human gut metagenome; human gut
6710
6636
-
Pro
TGG
[ENA]
¢þ
>WENV183088066
OLJR01000177
[OLJR] human gut metagenome; human gut
6813
6737
-
Arg
ACG
[ENA]
¢þ
>WENV183088065
OLJR01000177
[OLJR] human gut metagenome; human gut
6914
6826
-
Leu
TAA
[ENA]
¢þ
>WENV183088064
OLJR01000177
[OLJR] human gut metagenome; human gut
7000
6926
-
Gly
GCC
[ENA]
¢þ
>WENV183088063
OLJR01000177
[OLJR] human gut metagenome; human gut
7092
7018
-
Lys
TTT
[ENA]
¢þ
>WENV183088062
OLJR01000177
[OLJR] human gut metagenome; human gut
7173
7098
-
Thr
TGT
[ENA]
¢þ
>WENV183088061
OLJR01000177
[OLJR] human gut metagenome; human gut
7255
7180
-
Val
TAC
[ENA]
¢þ
>WENV183088060
OLJR01000177
[OLJR] human gut metagenome; human gut
7333
7262
-
Glu
TTC
[ENA]
¢þ
>WENV183088052
OLJR01000131
[OLJR] human gut metagenome; human gut
9392
9468
+
Asp
GTC
[ENA]
¢þ
>WENV183088027
OLJR01000023
[OLJR] human gut metagenome; human gut
9929
10005
+
fMet
CAT
[ENA]
¢þ
>WENV183088059
OLJR01000168
[OLJR] human gut metagenome; human gut
13581
13506
-
Ala
GGC
[ENA]
¢þ
>WENV183088057
OLJR01000167
[OLJR] human gut metagenome; human gut
13695
13619
-
Arg
TCT
[ENA]
¢þ
>WENV183088058
OLJR01000168
[OLJR] human gut metagenome; human gut
13698
13623
-
Ala
GGC
[ENA]
¢þ
>WENV183088072
OLJR01000201
[OLJR] human gut metagenome; human gut
13998
14074
+
Pro
TGG
[ENA]
¢þ
>WENV183088055
OLJR01000163
[OLJR] human gut metagenome; human gut
16675
16751
+
Arg
CCG
[ENA]
¢þ
>WENV183088056
OLJR01000163
[OLJR] human gut metagenome; human gut
16807
16882
+
His
GTG
[ENA]
¢þ
>WENV183088051
OLJR01000128
[OLJR] human gut metagenome; human gut
19329
19416
+
Ser
TGA
[ENA]
¢þ
>WENV183088042
OLJR01000067
[OLJR] human gut metagenome; human gut
21368
21443
+
Gly
GCC
[ENA]
¢þ
>WENV183088043
OLJR01000067
[OLJR] human gut metagenome; human gut
21468
21543
+
Gly
GCC
[ENA]
¢þ
>WENV183088044
OLJR01000067
[OLJR] human gut metagenome; human gut
21568
21643
+
Gly
GCC
[ENA]
¢þ
>WENV183088031
OLJR01000032
[OLJR] human gut metagenome; human gut
22907
22832
-
Asn
GTT
[ENA]
¢þ
>WENV183088041
OLJR01000058
[OLJR] human gut metagenome; human gut
23116
23040
-
Asp
GTC
[ENA]
¢þ
>WENV183088030
OLJR01000032
[OLJR] human gut metagenome; human gut
23899
23988
+
Ser
CGA
[ENA]
¢þ
>WENV183088039
OLJR01000050
[OLJR] human gut metagenome; human gut
24346
24430
+
Leu
CAA
[ENA]
¢þ
>WENV183088049
OLJR01000080
[OLJR] human gut metagenome; human gut
27882
27957
+
Thr
CGT
[ENA]
¢þ
>WENV183088048
OLJR01000078
[OLJR] human gut metagenome; human gut
27902
27827
-
Trp
CCA
[ENA]
¢þ
>WENV183088045
OLJR01000069
[OLJR] human gut metagenome; human gut
30247
30339
+
Ser
GCT
[ENA]
¢þ
>WENV183088036
OLJR01000049
[OLJR] human gut metagenome; human gut
35784
35860
+
Met
CAT
[ENA]
¢þ
>WENV183088037
OLJR01000049
[OLJR] human gut metagenome; human gut
35869
35953
+
Leu
TAG
[ENA]
¢þ
>WENV183088038
OLJR01000049
[OLJR] human gut metagenome; human gut
35989
36063
+
Gln
TTG
[ENA]
¢þ
>WENV183088035
OLJR01000033
[OLJR] human gut metagenome; human gut
39601
39515
-
Leu
CAG
[ENA]
¢þ
>WENV183088034
OLJR01000033
[OLJR] human gut metagenome; human gut
39719
39633
-
Leu
CAG
[ENA]
¢þ
>WENV183088033
OLJR01000033
[OLJR] human gut metagenome; human gut
39834
39748
-
Leu
CAG
[ENA]
¢þ
>WENV183088017
OLJR01000008
[OLJR] human gut metagenome; human gut
40215
40139
-
Pro
CGG
[ENA]
¢þ
>WENV183088028
OLJR01000025
[OLJR] human gut metagenome; human gut
58522
58446
-
Arg
ACG
[ENA]
¢þ
>WENV183088026
OLJR01000020
[OLJR] human gut metagenome; human gut
65245
65316
+
Arg
CCT
[ENA]
¢þ
>WENV183088016
OLJR01000005
[OLJR] human gut metagenome; human gut
68284
68208
-
Pro
GGG
[ENA]
¢þ
>WENV183088020
OLJR01000009
[OLJR] human gut metagenome; human gut
70565
70489
-
Val
GAC
[ENA]
¢þ
>WENV183088019
OLJR01000009
[OLJR] human gut metagenome; human gut
70646
70570
-
Val
GAC
[ENA]
¢þ
>WENV183088018
OLJR01000009
[OLJR] human gut metagenome; human gut
70727
70651
-
Val
GAC
[ENA]
¢þ
>WENV183088023
OLJR01000012
[OLJR] human gut metagenome; human gut
80604
80518
-
Leu
TAA
[ENA]
¢þ
>WENV183088022
OLJR01000012
[OLJR] human gut metagenome; human gut
80691
80618
-
Cys
GCA
[ENA]
¢þ
>WENV183088021
OLJR01000012
[OLJR] human gut metagenome; human gut
80805
80730
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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