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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLKV] soil metagenome; soil
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183092193
OLKV01000241
[OLKV] soil metagenome; soil
12
96
+
Leu
CAG
[ENA]
¢þ
>WENV183092183
OLKV01000207
[OLKV] soil metagenome; soil
152
78
-
Pro
TGG
[ENA]
¢þ
>WENV183092194
OLKV01000241
[OLKV] soil metagenome; soil
170
254
+
Leu
GAG
[ENA]
¢þ
>WENV183092177
OLKV01000178
[OLKV] soil metagenome; soil
199
127
-
Arg
CCT
[ENA]
¢þ
>WENV183092190
OLKV01000232
[OLKV] soil metagenome; soil
229
158
-
Cys
GCA
[ENA]
¢þ
>WENV183092166
OLKV01000115
[OLKV] soil metagenome; soil
1834
1760
-
Ala
GGC
[ENA]
¢þ
>WENV183092196
OLKV01000251
[OLKV] soil metagenome; soil
1836
1909
+
Thr
TGT
[ENA]
¢þ
>WENV183092171
OLKV01000142
[OLKV] soil metagenome; soil
4240
4314
+
Asn
GTT
[ENA]
¢þ
>WENV183092174
OLKV01000162
[OLKV] soil metagenome; soil
8032
8106
+
fMet
CAT
[ENA]
¢þ
>WENV183092188
OLKV01000230
[OLKV] soil metagenome; soil
8227
8153
-
Arg
TCT
[ENA]
¢þ
>WENV183092175
OLKV01000162
[OLKV] soil metagenome; soil
8228
8302
+
fMet
CAT
[ENA]
¢þ
>WENV183092167
OLKV01000118
[OLKV] soil metagenome; soil
9195
9269
+
Pro
TGG
[ENA]
¢þ
>WENV183092197
OLKV01000273
[OLKV] soil metagenome; soil
13193
13267
+
His
GTG
[ENA]
¢þ
>WENV183092170
OLKV01000141
[OLKV] soil metagenome; soil
14598
14527
-
Gln
TTG
[ENA]
¢þ
>WENV183092189
OLKV01000232
[OLKV] soil metagenome; soil
15672
15743
+
Cys
GCA
[ENA]
¢þ
>WENV183092185
OLKV01000212
[OLKV] soil metagenome; soil
15854
15927
+
Phe
GAA
[ENA]
¢þ
>WENV183092180
OLKV01000194
[OLKV] soil metagenome; soil
16214
16288
+
Arg
CCG
[ENA]
¢þ
>WENV183092187
OLKV01000227
[OLKV] soil metagenome; soil
18858
18930
+
Glu
TTC
[ENA]
¢þ
>WENV183092163
OLKV01000084
[OLKV] soil metagenome; soil
22544
22471
-
Lys
CTT
[ENA]
¢þ
>WENV183092195
OLKV01000243
[OLKV] soil metagenome; soil
23226
23310
+
Leu
CAA
[ENA]
¢þ
>WENV183092173
OLKV01000161
[OLKV] soil metagenome; soil
24248
24335
+
Ser
GCT
[ENA]
¢þ
>WENV183092169
OLKV01000125
[OLKV] soil metagenome; soil
27336
27254
-
Leu
TAG
[ENA]
¢þ
>WENV183092176
OLKV01000163
[OLKV] soil metagenome; soil
31293
31219
-
Met
CAT
[ENA]
¢þ
>WENV183092198
OLKV01000278
[OLKV] soil metagenome; soil
35357
35283
-
Asp
GTC
[ENA]
¢þ
>WENV183092186
OLKV01000213
[OLKV] soil metagenome; soil
45494
45420
-
Arg
ACG
[ENA]
¢þ
>WENV183092182
OLKV01000199
[OLKV] soil metagenome; soil
46807
46717
-
Ser
GGA
[ENA]
¢þ
>WENV183092165
OLKV01000109
[OLKV] soil metagenome; soil
52587
52660
+
Gly
GCC
[ENA]
¢þ
>WENV183092184
OLKV01000208
[OLKV] soil metagenome; soil
59396
59470
+
Val
TAC
[ENA]
¢þ
>WENV183092172
OLKV01000147
[OLKV] soil metagenome; soil
62527
62453
-
His
GTG
[ENA]
¢þ
>WENV183092164
OLKV01000108
[OLKV] soil metagenome; soil
66300
66229
-
Cys
GCA
[ENA]
¢þ
>WENV183092168
OLKV01000120
[OLKV] soil metagenome; soil
68860
68773
-
Ser
CGA
[ENA]
¢þ
>WENV183092181
OLKV01000199
[OLKV] soil metagenome; soil
78230
78159
-
Gln
CTG
[ENA]
¢þ
>WENV183092179
OLKV01000189
[OLKV] soil metagenome; soil
87807
87734
-
Lys
TTT
[ENA]
¢þ
>WENV183092192
OLKV01000236
[OLKV] soil metagenome; soil
89394
89321
-
Gly
GCC
[ENA]
¢þ
>WENV183092191
OLKV01000236
[OLKV] soil metagenome; soil
89535
89450
-
Leu
TAA
[ENA]
¢þ
>WENV183092178
OLKV01000179
[OLKV] soil metagenome; soil
139163
139090
-
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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