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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLKY] soil metagenome; soil
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183092288
OLKY01000131
[OLKY] soil metagenome; soil
9
93
+
Leu
GAG
[ENA]
¢þ
>WENV183092310
OLKY01000258
[OLKY] soil metagenome; soil
447
363
-
Leu
CAG
[ENA]
¢þ
>WENV183092294
OLKY01000173
[OLKY] soil metagenome; soil
574
483
-
Ser
GCT
[ENA]
¢þ
>WENV183092281
OLKY01000113
[OLKY] soil metagenome; soil
1423
1496
+
Gln
TTG
[ENA]
¢þ
>WENV183092301
OLKY01000218
[OLKY] soil metagenome; soil
2629
2554
-
Ala
CGC
[ENA]
¢þ
>WENV183092274
OLKY01000070
[OLKY] soil metagenome; soil
3414
3490
+
Met
CAT
[ENA]
¢þ
>WENV183092277
OLKY01000088
[OLKY] soil metagenome; soil
3481
3408
-
Gly
CCC
[ENA]
¢þ
>WENV183092278
OLKY01000098
[OLKY] soil metagenome; soil
5375
5448
+
Gly
TCC
[ENA]
¢þ
>WENV183092296
OLKY01000190
[OLKY] soil metagenome; soil
7040
6965
-
Thr
TGT
[ENA]
¢þ
>WENV183092276
OLKY01000082
[OLKY] soil metagenome; soil
8231
8157
-
Glu
TTC
[ENA]
¢þ
>WENV183092313
OLKY01000284
[OLKY] soil metagenome; soil
10688
10762
+
His
GTG
[ENA]
¢þ
>WENV183092282
OLKY01000113
[OLKY] soil metagenome; soil
10859
10934
+
Lys
TTT
[ENA]
¢þ
>WENV183092309
OLKY01000252
[OLKY] soil metagenome; soil
10999
10924
-
Phe
GAA
[ENA]
¢þ
>WENV183092307
OLKY01000244
[OLKY] soil metagenome; soil
12392
12467
+
Lys
CTT
[ENA]
¢þ
>WENV183092308
OLKY01000246
[OLKY] soil metagenome; soil
12408
12334
-
Thr
TGT
[ENA]
¢þ
>WENV183092300
OLKY01000217
[OLKY] soil metagenome; soil
12484
12559
+
Ala
GGC
[ENA]
¢þ
>WENV183092271
OLKY01000037
[OLKY] soil metagenome; soil
12586
12670
+
Tyr
GTA
[ENA]
¢þ
>WENV183092283
OLKY01000113
[OLKY] soil metagenome; soil
13203
13279
+
Gly
GCC
[ENA]
¢þ
>WENV183092279
OLKY01000106
[OLKY] soil metagenome; soil
17592
17517
-
Arg
CCT
[ENA]
¢þ
>WENV183092286
OLKY01000123
[OLKY] soil metagenome; soil
18473
18384
-
Ser
TGA
[ENA]
¢þ
>WENV183092285
OLKY01000123
[OLKY] soil metagenome; soil
18559
18484
-
Trp
CCA
[ENA]
¢þ
>WENV183092295
OLKY01000183
[OLKY] soil metagenome; soil
18677
18760
+
Leu
TAG
[ENA]
¢þ
>WENV183092289
OLKY01000134
[OLKY] soil metagenome; soil
19142
19229
+
Leu
TAA
[ENA]
¢þ
>WENV183092306
OLKY01000229
[OLKY] soil metagenome; soil
19675
19599
-
Arg
CCG
[ENA]
¢þ
>WENV183092284
OLKY01000123
[OLKY] soil metagenome; soil
19964
19889
-
Thr
GGT
[ENA]
¢þ
>WENV183092304
OLKY01000227
[OLKY] soil metagenome; soil
20621
20545
-
Pro
CGG
[ENA]
¢þ
>WENV183092302
OLKY01000220
[OLKY] soil metagenome; soil
21970
21894
-
Arg
ACG
[ENA]
¢þ
>WENV183092275
OLKY01000082
[OLKY] soil metagenome; soil
23093
23016
-
Pro
TGG
[ENA]
¢þ
>WENV183092280
OLKY01000107
[OLKY] soil metagenome; soil
24503
24427
-
fMet
CAT
[ENA]
¢þ
>WENV183092273
OLKY01000057
[OLKY] soil metagenome; soil
25566
25640
+
Cys
GCA
[ENA]
¢þ
>WENV183092305
OLKY01000229
[OLKY] soil metagenome; soil
25584
25660
+
Arg
TCT
[ENA]
¢þ
>WENV183092312
OLKY01000265
[OLKY] soil metagenome; soil
26338
26262
-
Arg
TCG
[ENA]
¢þ
>WENV183092298
OLKY01000198
[OLKY] soil metagenome; soil
27492
27580
+
Ser
GGA
[ENA]
¢þ
>WENV183092292
OLKY01000138
[OLKY] soil metagenome; soil
29269
29180
-
Ser
CGA
[ENA]
¢þ
>WENV183092293
OLKY01000151
[OLKY] soil metagenome; soil
29826
29900
+
Asn
GTT
[ENA]
¢þ
>WENV183092303
OLKY01000227
[OLKY] soil metagenome; soil
33616
33691
+
Ile2
CAT
[ENA]
¢þ
>WENV183092272
OLKY01000046
[OLKY] soil metagenome; soil
35579
35655
+
Asp
GTC
[ENA]
¢þ
>WENV183092297
OLKY01000195
[OLKY] soil metagenome; soil
37916
38000
+
Leu
GAG
[ENA]
¢þ
>WENV183092287
OLKY01000129
[OLKY] soil metagenome; soil
44810
44724
-
Leu
CAA
[ENA]
¢þ
>WENV183092290
OLKY01000138
[OLKY] soil metagenome; soil
45791
45865
+
Thr
CGT
[ENA]
¢þ
>WENV183092299
OLKY01000206
[OLKY] soil metagenome; soil
49790
49716
-
Val
CAC
[ENA]
¢þ
>WENV183092291
OLKY01000138
[OLKY] soil metagenome; soil
79548
79621
+
Gln
CTG
[ENA]
¢þ
>WENV183092311
OLKY01000265
[OLKY] soil metagenome; soil
85869
85945
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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