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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OLLM] soil metagenome; soil
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183092848
OLLM01000208
[OLLM] soil metagenome; soil
4
91
+
Ser
TGA
[ENA]
¢þ
>WENV183092816
OLLM01000084
[OLLM] soil metagenome; soil
8
82
+
Thr
TGT
[ENA]
¢þ
>WENV183092840
OLLM01000189
[OLLM] soil metagenome; soil
14
90
+
Met
CAT
[ENA]
¢þ
>WENV183092843
OLLM01000194
[OLLM] soil metagenome; soil
16
88
+
Gln
CTG
[ENA]
¢þ
>WENV183092815
OLLM01000075
[OLLM] soil metagenome; soil
44
117
+
Phe
GAA
[ENA]
¢þ
>WENV183092825
OLLM01000139
[OLLM] soil metagenome; soil
85
10
-
Asp
GTC
[ENA]
¢þ
>WENV183092834
OLLM01000162
[OLLM] soil metagenome; soil
93
21
-
Thr
GGT
[ENA]
¢þ
>WENV183092844
OLLM01000194
[OLLM] soil metagenome; soil
125
199
+
Glu
CTC
[ENA]
¢þ
>WENV183092850
OLLM01000213
[OLLM] soil metagenome; soil
324
250
-
Val
CAC
[ENA]
¢þ
>WENV183092841
OLLM01000189
[OLLM] soil metagenome; soil
373
446
+
Trp
CCA
[ENA]
¢þ
>WENV183092833
OLLM01000162
[OLLM] soil metagenome; soil
2494
2410
-
Tyr
GTA
[ENA]
¢þ
>WENV183092851
OLLM01000215
[OLLM] soil metagenome; soil
2546
2621
+
Gln
TTG
[ENA]
¢þ
>WENV183092854
OLLM01000226
[OLLM] soil metagenome; soil
3854
3927
+
Ala
TGC
[ENA]
¢þ
>WENV183092821
OLLM01000107
[OLLM] soil metagenome; soil
4449
4520
+
Cys
GCA
[ENA]
¢þ
>WENV183092820
OLLM01000099
[OLLM] soil metagenome; soil
4704
4611
-
Ser
GCT
[ENA]
¢þ
>WENV183092826
OLLM01000141
[OLLM] soil metagenome; soil
13589
13663
+
Pro
CGG
[ENA]
¢þ
>WENV183092819
OLLM01000099
[OLLM] soil metagenome; soil
17772
17859
+
Ser
TGA
[ENA]
¢þ
>WENV183092824
OLLM01000133
[OLLM] soil metagenome; soil
18480
18395
-
Ser
CGA
[ENA]
¢þ
>WENV183092852
OLLM01000215
[OLLM] soil metagenome; soil
21247
21321
+
Leu
TAA
[ENA]
¢þ
>WENV183092855
OLLM01000226
[OLLM] soil metagenome; soil
22991
23067
+
Arg
ACG
[ENA]
¢þ
>WENV183092831
OLLM01000162
[OLLM] soil metagenome; soil
24746
24833
+
Ser
GGA
[ENA]
¢þ
>WENV183092817
OLLM01000084
[OLLM] soil metagenome; soil
25982
25907
-
Thr
CGT
[ENA]
¢þ
>WENV183092832
OLLM01000162
[OLLM] soil metagenome; soil
28176
28262
+
Ser
CGA
[ENA]
¢þ
>WENV183092814
OLLM01000061
[OLLM] soil metagenome; soil
32930
33004
+
fMet
CAT
[ENA]
¢þ
>WENV183092849
OLLM01000208
[OLLM] soil metagenome; soil
40808
40882
+
Thr
TGT
[ENA]
¢þ
>WENV183092857
OLLM01000231
[OLLM] soil metagenome; soil
41315
41229
-
Leu
CAG
[ENA]
¢þ
>WENV183092818
OLLM01000095
[OLLM] soil metagenome; soil
45937
46014
+
Arg
CCT
[ENA]
¢þ
>WENV183092830
OLLM01000153
[OLLM] soil metagenome; soil
46588
46515
-
Glu
TTC
[ENA]
¢þ
>WENV183092829
OLLM01000153
[OLLM] soil metagenome; soil
46693
46617
-
Pro
CGG
[ENA]
¢þ
>WENV183092823
OLLM01000128
[OLLM] soil metagenome; soil
49615
49531
-
Leu
CAA
[ENA]
¢þ
>WENV183092856
OLLM01000231
[OLLM] soil metagenome; soil
51514
51438
-
Ile
GAT
[ENA]
¢þ
>WENV183092828
OLLM01000142
[OLLM] soil metagenome; soil
54888
54806
-
Leu
TAG
[ENA]
¢þ
>WENV183092813
OLLM01000053
[OLLM] soil metagenome; soil
55305
55227
-
Pro
GGG
[ENA]
¢þ
>WENV183092827
OLLM01000142
[OLLM] soil metagenome; soil
63464
63539
+
Gly
GCC
[ENA]
¢þ
>WENV183092847
OLLM01000201
[OLLM] soil metagenome; soil
72763
72690
-
Gly
CCC
[ENA]
¢þ
>WENV183092822
OLLM01000128
[OLLM] soil metagenome; soil
75502
75588
+
Leu
GAG
[ENA]
¢þ
>WENV183092842
OLLM01000189
[OLLM] soil metagenome; soil
111972
112044
+
Gln
CTG
[ENA]
¢þ
>WENV183092846
OLLM01000194
[OLLM] soil metagenome; soil
113903
113829
-
Arg
CCG
[ENA]
¢þ
>WENV183092839
OLLM01000185
[OLLM] soil metagenome; soil
118708
118635
-
Gly
TCC
[ENA]
¢þ
>WENV183092853
OLLM01000224
[OLLM] soil metagenome; soil
144522
144596
+
Val
TAC
[ENA]
¢þ
>WENV183092845
OLLM01000194
[OLLM] soil metagenome; soil
153436
153509
+
Ala
CGC
[ENA]
¢þ
>WENV183092838
OLLM01000185
[OLLM] soil metagenome; soil
203541
203466
-
Lys
CTT
[ENA]
¢þ
>WENV183092837
OLLM01000185
[OLLM] soil metagenome; soil
203768
203692
-
His
GTG
[ENA]
¢þ
>WENV183092835
OLLM01000185
[OLLM] soil metagenome; soil
203844
203919
+
Arg
TCT
[ENA]
¢þ
>WENV183092836
OLLM01000185
[OLLM] soil metagenome; soil
207998
207921
-
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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