This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OLLQ] soil metagenome; soil
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183093002
OLLQ01000599
[OLLQ] soil metagenome; soil
15
91
+
Asp
GTC
[ENA]
¢þ
>WENV183093028
OLLQ01000831
[OLLQ] soil metagenome; soil
85
1
-
Leu
GAG
[ENA]
¢þ
>WENV183092997
OLLQ01000520
[OLLQ] soil metagenome; soil
390
466
+
Pro
CGG
[ENA]
¢þ
>WENV183093011
OLLQ01000711
[OLLQ] soil metagenome; soil
830
756
-
Asn
GTT
[ENA]
¢þ
>WENV183092990
OLLQ01000416
[OLLQ] soil metagenome; soil
844
920
+
Pro
TGG
[ENA]
¢þ
>WENV183093000
OLLQ01000577
[OLLQ] soil metagenome; soil
902
977
+
Ala
CGC
[ENA]
¢þ
>WENV183093018
OLLQ01000768
[OLLQ] soil metagenome; soil
1023
1107
+
Leu
TAG
[ENA]
¢þ
>WENV183093010
OLLQ01000711
[OLLQ] soil metagenome; soil
1287
1214
-
Cys
GCA
[ENA]
¢þ
>WENV183092995
OLLQ01000503
[OLLQ] soil metagenome; soil
1293
1377
+
Leu
CAA
[ENA]
¢þ
>WENV183093029
OLLQ01000838
[OLLQ] soil metagenome; soil
1335
1251
-
Leu
GAG
[ENA]
¢þ
>WENV183093006
OLLQ01000639
[OLLQ] soil metagenome; soil
1544
1618
+
Val
CAC
[ENA]
¢þ
>WENV183093021
OLLQ01000786
[OLLQ] soil metagenome; soil
1671
1597
-
Met
CAT
[ENA]
¢þ
>WENV183093025
OLLQ01000814
[OLLQ] soil metagenome; soil
1949
1861
-
Leu
TAA
[ENA]
¢þ
>WENV183093026
OLLQ01000821
[OLLQ] soil metagenome; soil
1999
2083
+
Tyr
GTA
[ENA]
¢þ
>WENV183093001
OLLQ01000591
[OLLQ] soil metagenome; soil
2201
2125
-
Arg
ACG
[ENA]
¢þ
>WENV183093027
OLLQ01000821
[OLLQ] soil metagenome; soil
2239
2312
+
Gly
TCC
[ENA]
¢þ
>WENV183092991
OLLQ01000416
[OLLQ] soil metagenome; soil
2539
2463
-
Arg
TCT
[ENA]
¢þ
>WENV183093009
OLLQ01000699
[OLLQ] soil metagenome; soil
3092
3017
-
Thr
TGT
[ENA]
¢þ
>WENV183093024
OLLQ01000809
[OLLQ] soil metagenome; soil
3097
3022
-
Trp
CCA
[ENA]
¢þ
>WENV183093005
OLLQ01000620
[OLLQ] soil metagenome; soil
3227
3302
+
Thr
CGT
[ENA]
¢þ
>WENV183092993
OLLQ01000467
[OLLQ] soil metagenome; soil
3449
3522
+
Gly
CCC
[ENA]
¢þ
>WENV183093003
OLLQ01000606
[OLLQ] soil metagenome; soil
3455
3529
+
Glu
CTC
[ENA]
¢þ
>WENV183092994
OLLQ01000496
[OLLQ] soil metagenome; soil
3929
3840
-
Ser
CGA
[ENA]
¢þ
>WENV183092998
OLLQ01000533
[OLLQ] soil metagenome; soil
4134
4058
-
His
GTG
[ENA]
¢þ
>WENV183093008
OLLQ01000659
[OLLQ] soil metagenome; soil
4175
4250
+
Ala
GGC
[ENA]
¢þ
>WENV183092989
OLLQ01000317
[OLLQ] soil metagenome; soil
4376
4453
+
Pro
GGG
[ENA]
¢þ
>WENV183093015
OLLQ01000741
[OLLQ] soil metagenome; soil
4464
4538
+
Thr
GGT
[ENA]
¢þ
>WENV183092992
OLLQ01000434
[OLLQ] soil metagenome; soil
5300
5224
-
Arg
CCG
[ENA]
¢þ
>WENV183093020
OLLQ01000776
[OLLQ] soil metagenome; soil
5409
5334
-
Lys
CTT
[ENA]
¢þ
>WENV183093004
OLLQ01000611
[OLLQ] soil metagenome; soil
6104
6193
+
Ser
GGA
[ENA]
¢þ
>WENV183093007
OLLQ01000655
[OLLQ] soil metagenome; soil
6360
6434
+
Glu
TTC
[ENA]
¢þ
>WENV183093013
OLLQ01000722
[OLLQ] soil metagenome; soil
6829
6755
-
Gly
GCC
[ENA]
¢þ
>WENV183093014
OLLQ01000726
[OLLQ] soil metagenome; soil
7368
7293
-
Phe
GAA
[ENA]
¢þ
>WENV183093022
OLLQ01000797
[OLLQ] soil metagenome; soil
8260
8184
-
Arg
CCT
[ENA]
¢þ
>WENV183092999
OLLQ01000547
[OLLQ] soil metagenome; soil
10083
9994
-
Ser
TGA
[ENA]
¢þ
>WENV183093019
OLLQ01000768
[OLLQ] soil metagenome; soil
12052
12127
+
Val
TAC
[ENA]
¢þ
>WENV183093023
OLLQ01000804
[OLLQ] soil metagenome; soil
13326
13252
-
Val
GAC
[ENA]
¢þ
>WENV183093012
OLLQ01000722
[OLLQ] soil metagenome; soil
15978
16054
+
Ile2
CAT
[ENA]
¢þ
>WENV183092996
OLLQ01000513
[OLLQ] soil metagenome; soil
17352
17278
-
Lys
TTT
[ENA]
¢þ
>WENV183093016
OLLQ01000743
[OLLQ] soil metagenome; soil
18661
18588
-
Gln
CTG
[ENA]
¢þ
>WENV183093017
OLLQ01000764
[OLLQ] soil metagenome; soil
29968
30044
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK