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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLLR] soil metagenome; soil
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183093047
OLLR01000070
[OLLR] soil metagenome; soil
1
75
+
Gly
TCC
[ENA]
¢þ
>WENV183093061
OLLR01000104
[OLLR] soil metagenome; soil
76
1
-
Pro
CGG
[ENA]
¢þ
>WENV183093059
OLLR01000098
[OLLR] soil metagenome; soil
86
1
-
Leu
CAA
[ENA]
¢þ
>WENV183093057
OLLR01000094
[OLLR] soil metagenome; soil
156
65
-
Ser
CGA
[ENA]
¢þ
>WENV183093068
OLLR01000112
[OLLR] soil metagenome; soil
454
367
-
Tyr
GTA
[ENA]
¢þ
>WENV183093058
OLLR01000096
[OLLR] soil metagenome; soil
766
842
+
Pro
TGG
[ENA]
¢þ
>WENV183093067
OLLR01000112
[OLLR] soil metagenome; soil
832
757
-
Thr
TGT
[ENA]
¢þ
>WENV183093042
OLLR01000053
[OLLR] soil metagenome; soil
1149
1075
-
Asn
GTT
[ENA]
¢þ
>WENV183093041
OLLR01000053
[OLLR] soil metagenome; soil
1606
1532
-
Ala
TGC
[ENA]
¢þ
>WENV183093062
OLLR01000106
[OLLR] soil metagenome; soil
1882
1958
+
Arg
TCT
[ENA]
¢þ
>WENV183093037
OLLR01000041
[OLLR] soil metagenome; soil
2095
2171
+
Val
TAC
[ENA]
¢þ
>WENV183093055
OLLR01000091
[OLLR] soil metagenome; soil
3344
3252
-
Ser
GCT
[ENA]
¢þ
>WENV183093039
OLLR01000050
[OLLR] soil metagenome; soil
3498
3572
+
Glu
CTC
[ENA]
¢þ
>WENV183093060
OLLR01000104
[OLLR] soil metagenome; soil
8940
9016
+
Pro
GGG
[ENA]
¢þ
>WENV183093038
OLLR01000043
[OLLR] soil metagenome; soil
16050
16126
+
Arg
CCT
[ENA]
¢þ
>WENV183093050
OLLR01000070
[OLLR] soil metagenome; soil
19609
19535
-
Phe
GAA
[ENA]
¢þ
>WENV183093046
OLLR01000063
[OLLR] soil metagenome; soil
20824
20749
-
Ala
GGC
[ENA]
¢þ
>WENV183093052
OLLR01000076
[OLLR] soil metagenome; soil
23854
23930
+
Val
GAC
[ENA]
¢þ
>WENV183093051
OLLR01000075
[OLLR] soil metagenome; soil
25503
25578
+
Thr
CGT
[ENA]
¢þ
>WENV183093053
OLLR01000076
[OLLR] soil metagenome; soil
36074
36148
+
Asn
GTT
[ENA]
¢þ
>WENV183093030
OLLR01000022
[OLLR] soil metagenome; soil
38726
38799
+
Gln
TTG
[ENA]
¢þ
>WENV183093031
OLLR01000022
[OLLR] soil metagenome; soil
46149
46074
-
Ile2
CAT
[ENA]
¢þ
>WENV183093056
OLLR01000094
[OLLR] soil metagenome; soil
46188
46113
-
Lys
CTT
[ENA]
¢þ
>WENV183093040
OLLR01000051
[OLLR] soil metagenome; soil
48252
48168
-
Leu
GAG
[ENA]
¢þ
>WENV183093032
OLLR01000031
[OLLR] soil metagenome; soil
54018
53942
-
Arg
CCG
[ENA]
¢þ
>WENV183093043
OLLR01000059
[OLLR] soil metagenome; soil
57807
57882
+
Lys
TTT
[ENA]
¢þ
>WENV183093066
OLLR01000111
[OLLR] soil metagenome; soil
69221
69132
-
Ser
TGA
[ENA]
¢þ
>WENV183093054
OLLR01000077
[OLLR] soil metagenome; soil
70875
70951
+
Met
CAT
[ENA]
¢þ
>WENV183093045
OLLR01000063
[OLLR] soil metagenome; soil
71106
71022
-
Leu
TAG
[ENA]
¢þ
>WENV183093044
OLLR01000059
[OLLR] soil metagenome; soil
76233
76159
-
Gly
CCC
[ENA]
¢þ
>WENV183093036
OLLR01000040
[OLLR] soil metagenome; soil
77260
77186
-
Val
CAC
[ENA]
¢þ
>WENV183093035
OLLR01000040
[OLLR] soil metagenome; soil
81250
81326
+
fMet
CAT
[ENA]
¢þ
>WENV183093049
OLLR01000070
[OLLR] soil metagenome; soil
84501
84425
-
Arg
ACG
[ENA]
¢þ
>WENV183093065
OLLR01000111
[OLLR] soil metagenome; soil
86673
86599
-
Cys
GCA
[ENA]
¢þ
>WENV183093064
OLLR01000111
[OLLR] soil metagenome; soil
86828
86754
-
Gly
GCC
[ENA]
¢þ
>WENV183093048
OLLR01000070
[OLLR] soil metagenome; soil
94809
94882
+
Gln
CTG
[ENA]
¢þ
>WENV183093063
OLLR01000111
[OLLR] soil metagenome; soil
104725
104650
-
Ala
CGC
[ENA]
¢þ
>WENV183093033
OLLR01000032
[OLLR] soil metagenome; soil
106980
107067
+
Ser
GGA
[ENA]
¢þ
>WENV183093034
OLLR01000032
[OLLR] soil metagenome; soil
119755
119841
+
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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