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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLLT] soil metagenome; soil
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183093150
OLLT01000410
[OLLT] soil metagenome; soil
353
280
-
Arg
CCG
[ENA]
¢þ
>WENV183093148
OLLT01000406
[OLLT] soil metagenome; soil
508
435
-
His
GTG
[ENA]
¢þ
>WENV183093132
OLLT01000274
[OLLT] soil metagenome; soil
599
513
-
Leu
GAG
[ENA]
¢þ
>WENV183093116
OLLT01000057
[OLLT] soil metagenome; soil
684
755
+
Gln
TTG
[ENA]
¢þ
>WENV183093125
OLLT01000217
[OLLT] soil metagenome; soil
829
903
+
Lys
TTT
[ENA]
¢þ
>WENV183093131
OLLT01000263
[OLLT] soil metagenome; soil
1430
1357
-
Ala
TGC
[ENA]
¢þ
>WENV183093120
OLLT01000125
[OLLT] soil metagenome; soil
1466
1394
-
Ala
CGC
[ENA]
¢þ
>WENV183093133
OLLT01000277
[OLLT] soil metagenome; soil
1515
1440
-
Thr
TGT
[ENA]
¢þ
>WENV183093136
OLLT01000301
[OLLT] soil metagenome; soil
2109
2198
+
Ser
TGA
[ENA]
¢þ
>WENV183093121
OLLT01000139
[OLLT] soil metagenome; soil
2221
2147
-
Arg
CCT
[ENA]
¢þ
>WENV183093134
OLLT01000286
[OLLT] soil metagenome; soil
2415
2488
+
Thr
CGT
[ENA]
¢þ
>WENV183093135
OLLT01000298
[OLLT] soil metagenome; soil
2922
2997
+
Pro
CGG
[ENA]
¢þ
>WENV183093149
OLLT01000407
[OLLT] soil metagenome; soil
3180
3254
+
Asp
GTC
[ENA]
¢þ
>WENV183093139
OLLT01000329
[OLLT] soil metagenome; soil
3186
3111
-
Arg
TCT
[ENA]
¢þ
>WENV183093137
OLLT01000314
[OLLT] soil metagenome; soil
3206
3277
+
Val
CAC
[ENA]
¢þ
>WENV183093118
OLLT01000119
[OLLT] soil metagenome; soil
3307
3235
-
Glu
CTC
[ENA]
¢þ
>WENV183093117
OLLT01000119
[OLLT] soil metagenome; soil
3400
3483
+
Leu
CAG
[ENA]
¢þ
>WENV183093144
OLLT01000353
[OLLT] soil metagenome; soil
3532
3458
-
Trp
CCA
[ENA]
¢þ
>WENV183093143
OLLT01000353
[OLLT] soil metagenome; soil
3673
3589
-
Leu
TAG
[ENA]
¢þ
>WENV183093123
OLLT01000197
[OLLT] soil metagenome; soil
4014
3944
-
Cys
GCA
[ENA]
¢þ
>WENV183093124
OLLT01000213
[OLLT] soil metagenome; soil
4138
4065
-
Asn
GTT
[ENA]
¢þ
>WENV183093145
OLLT01000376
[OLLT] soil metagenome; soil
4323
4396
+
Ala
GGC
[ENA]
¢þ
>WENV183093142
OLLT01000353
[OLLT] soil metagenome; soil
4390
4307
-
Leu
CAA
[ENA]
¢þ
>WENV183093119
OLLT01000124
[OLLT] soil metagenome; soil
4652
4562
-
Ser
GCT
[ENA]
¢þ
>WENV183093127
OLLT01000226
[OLLT] soil metagenome; soil
5005
4918
-
Ser
CGA
[ENA]
¢þ
>WENV183093151
OLLT01000425
[OLLT] soil metagenome; soil
5850
5775
-
Pro
TGG
[ENA]
¢þ
>WENV183093130
OLLT01000262
[OLLT] soil metagenome; soil
6720
6647
-
Phe
GAA
[ENA]
¢þ
>WENV183093138
OLLT01000322
[OLLT] soil metagenome; soil
6782
6854
+
Gln
CTG
[ENA]
¢þ
>WENV183093129
OLLT01000257
[OLLT] soil metagenome; soil
6926
7009
+
Tyr
GTA
[ENA]
¢þ
>WENV183093126
OLLT01000226
[OLLT] soil metagenome; soil
7085
7177
+
Ser
GGA
[ENA]
¢þ
>WENV183093147
OLLT01000382
[OLLT] soil metagenome; soil
8897
8970
+
Thr
GGT
[ENA]
¢þ
>WENV183093122
OLLT01000150
[OLLT] soil metagenome; soil
12023
11949
-
Ile
GAT
[ENA]
¢þ
>WENV183093128
OLLT01000227
[OLLT] soil metagenome; soil
13122
13049
-
Gly
GCC
[ENA]
¢þ
>WENV183093140
OLLT01000335
[OLLT] soil metagenome; soil
13135
13208
+
Val
TAC
[ENA]
¢þ
>WENV183093153
OLLT01000436
[OLLT] soil metagenome; soil
17445
17369
-
fMet
CAT
[ENA]
¢þ
>WENV183093146
OLLT01000377
[OLLT] soil metagenome; soil
19983
19909
-
Ile2
CAT
[ENA]
¢þ
>WENV183093152
OLLT01000436
[OLLT] soil metagenome; soil
20707
20621
-
Leu
TAA
[ENA]
¢þ
>WENV183093141
OLLT01000336
[OLLT] soil metagenome; soil
21939
22013
+
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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