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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLLZ] soil metagenome; soil
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183093353
OLLZ01000440
[OLLZ] soil metagenome; soil
148
61
-
Tyr
GTA
[ENA]
¢þ
>WENV183093345
OLLZ01000152
[OLLZ] soil metagenome; soil
181
264
+
Leu
TAG
[ENA]
¢þ
>WENV183093352
OLLZ01000440
[OLLZ] soil metagenome; soil
329
254
-
Thr
TGT
[ENA]
¢þ
>WENV183093360
OLLZ01000616
[OLLZ] soil metagenome; soil
376
474
+
SeC
TCA
[ENA]
¢þ
>WENV183093369
OLLZ01000725
[OLLZ] soil metagenome; soil
383
457
+
Val
GAC
[ENA]
¢þ
>WENV183093351
OLLZ01000430
[OLLZ] soil metagenome; soil
455
531
+
fMet
CAT
[ENA]
¢þ
>WENV183093370
OLLZ01000725
[OLLZ] soil metagenome; soil
501
576
+
Val
CAC
[ENA]
¢þ
>WENV183093371
OLLZ01000736
[OLLZ] soil metagenome; soil
673
601
-
Lys
TTT
[ENA]
¢þ
>WENV183093347
OLLZ01000235
[OLLZ] soil metagenome; soil
790
715
-
Gly
CCC
[ENA]
¢þ
>WENV183093362
OLLZ01000656
[OLLZ] soil metagenome; soil
839
914
+
Phe
GAA
[ENA]
¢þ
>WENV183093344
OLLZ01000112
[OLLZ] soil metagenome; soil
936
851
-
Leu
CAA
[ENA]
¢þ
>WENV183093349
OLLZ01000376
[OLLZ] soil metagenome; soil
1096
1021
-
Val
TAC
[ENA]
¢þ
>WENV183093373
OLLZ01000761
[OLLZ] soil metagenome; soil
1168
1093
-
Glu
CTC
[ENA]
¢þ
>WENV183093374
OLLZ01000864
[OLLZ] soil metagenome; soil
1177
1253
+
Arg
TCT
[ENA]
¢þ
>WENV183093359
OLLZ01000596
[OLLZ] soil metagenome; soil
1269
1194
-
Pro
TGG
[ENA]
¢þ
>WENV183093361
OLLZ01000643
[OLLZ] soil metagenome; soil
1421
1345
-
Glu
TTC
[ENA]
¢þ
>WENV183093376
OLLZ01000897
[OLLZ] soil metagenome; soil
1479
1392
-
Ser
TGA
[ENA]
¢þ
>WENV183093375
OLLZ01000897
[OLLZ] soil metagenome; soil
1597
1507
-
Ser
GCT
[ENA]
¢þ
>WENV183093365
OLLZ01000693
[OLLZ] soil metagenome; soil
1673
1596
-
Arg
ACG
[ENA]
¢þ
>WENV183093356
OLLZ01000508
[OLLZ] soil metagenome; soil
1767
1691
-
Pro
GGG
[ENA]
¢þ
>WENV183093348
OLLZ01000317
[OLLZ] soil metagenome; soil
2625
2549
-
Arg
CCT
[ENA]
¢þ
>WENV183093354
OLLZ01000499
[OLLZ] soil metagenome; soil
2639
2563
-
Pro
CGG
[ENA]
¢þ
>WENV183093358
OLLZ01000516
[OLLZ] soil metagenome; soil
2692
2767
+
Thr
CGT
[ENA]
¢þ
>WENV183093350
OLLZ01000393
[OLLZ] soil metagenome; soil
3374
3301
-
Gln
CTG
[ENA]
¢þ
>WENV183093346
OLLZ01000158
[OLLZ] soil metagenome; soil
3384
3462
+
Met
CAT
[ENA]
¢þ
>WENV183093377
OLLZ01000940
[OLLZ] soil metagenome; soil
3646
3721
+
Ala
CGC
[ENA]
¢þ
>WENV183093357
OLLZ01000515
[OLLZ] soil metagenome; soil
3738
3812
+
Asn
GTT
[ENA]
¢þ
>WENV183093366
OLLZ01000694
[OLLZ] soil metagenome; soil
4041
4116
+
His
GTG
[ENA]
¢þ
>WENV183093364
OLLZ01000693
[OLLZ] soil metagenome; soil
4062
4151
+
Ser
CGA
[ENA]
¢þ
>WENV183093367
OLLZ01000694
[OLLZ] soil metagenome; soil
4150
4227
+
Arg
CCG
[ENA]
¢þ
>WENV183093372
OLLZ01000750
[OLLZ] soil metagenome; soil
4380
4454
+
Ile2
CAT
[ENA]
¢þ
>WENV183093355
OLLZ01000508
[OLLZ] soil metagenome; soil
6361
6274
-
Leu
CAG
[ENA]
¢þ
>WENV183093363
OLLZ01000671
[OLLZ] soil metagenome; soil
7339
7413
+
Gly
GCC
[ENA]
¢þ
>WENV183093368
OLLZ01000713
[OLLZ] soil metagenome; soil
9110
9036
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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