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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLTF] human gut metagenome; faeces
HIT:
68 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183307393
OLTF01003527
[OLTF] human gut metagenome; faeces
4
81
+
Arg
CCT
[ENA]
¢þ
>WENV183307369
OLTF01001499
[OLTF] human gut metagenome; faeces
21
92
+
Sup
CTA
[ENA]
¢þ
>WENV183307372
OLTF01001709
[OLTF] human gut metagenome; faeces
21
102
+
Leu
TAG
[ENA]
¢þ
>WENV183307384
OLTF01002597
[OLTF] human gut metagenome; faeces
27
100
+
Lys
TTT
[ENA]
¢þ
>WENV183307357
OLTF01000586
[OLTF] human gut metagenome; faeces
93
182
+
Leu
GAG
[ENA]
¢þ
>WENV183307339
OLTF01000176
[OLTF] human gut metagenome; faeces
101
190
+
Ser
GCT
[ENA]
¢þ
>WENV183307394
OLTF01003986
[OLTF] human gut metagenome; faeces
104
28
-
Pro
GGG
[ENA]
¢þ
>WENV183307360
OLTF01000693
[OLTF] human gut metagenome; faeces
106
182
+
Met
CAT
[ENA]
¢þ
>WENV183307399
OLTF01004173
[OLTF] human gut metagenome; faeces
112
37
-
Gln
TTG
[ENA]
¢þ
>WENV183307365
OLTF01001026
[OLTF] human gut metagenome; faeces
112
195
+
Leu
TAG
[ENA]
¢þ
>WENV183307370
OLTF01001651
[OLTF] human gut metagenome; faeces
115
40
-
Thr
CGT
[ENA]
¢þ
>WENV183307378
OLTF01002007
[OLTF] human gut metagenome; faeces
117
44
-
Gly
GCC
[ENA]
¢þ
>WENV183307386
OLTF01002655
[OLTF] human gut metagenome; faeces
149
225
+
Arg
CCT
[ENA]
¢þ
>WENV183307361
OLTF01000716
[OLTF] human gut metagenome; faeces
176
86
-
Ser
GCT
[ENA]
¢þ
>WENV183307389
OLTF01002813
[OLTF] human gut metagenome; faeces
180
95
-
Ser
TGA
[ENA]
¢þ
>WENV183307398
OLTF01004173
[OLTF] human gut metagenome; faeces
194
120
-
His
GTG
[ENA]
¢þ
>WENV183307392
OLTF01003417
[OLTF] human gut metagenome; faeces
203
131
-
Gln
CTG
[ENA]
¢þ
>WENV183307397
OLTF01004173
[OLTF] human gut metagenome; faeces
273
199
-
Arg
TCT
[ENA]
¢þ
>WENV183307379
OLTF01002117
[OLTF] human gut metagenome; faeces
297
369
+
Glu
TTC
[ENA]
¢þ
>WENV183307390
OLTF01002876
[OLTF] human gut metagenome; faeces
321
394
+
Lys
CTT
[ENA]
¢þ
>WENV183307373
OLTF01001769
[OLTF] human gut metagenome; faeces
341
266
-
Arg
CCG
[ENA]
¢þ
>WENV183307367
OLTF01001139
[OLTF] human gut metagenome; faeces
349
275
-
Val
GAC
[ENA]
¢þ
>WENV183307396
OLTF01004173
[OLTF] human gut metagenome; faeces
365
295
-
Gly
TCC
[ENA]
¢þ
>WENV183307364
OLTF01000928
[OLTF] human gut metagenome; faeces
401
326
-
Gln
TTG
[ENA]
¢þ
>WENV183307391
OLTF01002963
[OLTF] human gut metagenome; faeces
405
319
-
Leu
AAG
[ENA]
¢þ
>WENV183307400
OLTF01004490
[OLTF] human gut metagenome; faeces
417
492
+
Lys
CTT
[ENA]
¢þ
>WENV183307366
OLTF01001139
[OLTF] human gut metagenome; faeces
428
353
-
Gly
GCC
[ENA]
¢þ
>WENV183307382
OLTF01002521
[OLTF] human gut metagenome; faeces
433
358
-
Trp
CCA
[ENA]
¢þ
>WENV183307368
OLTF01001433
[OLTF] human gut metagenome; faeces
454
379
-
Arg
CCT
[ENA]
¢þ
>WENV183307395
OLTF01004173
[OLTF] human gut metagenome; faeces
475
400
-
Pro
TGG
[ENA]
¢þ
>WENV183307362
OLTF01000813
[OLTF] human gut metagenome; faeces
475
400
-
Val
TAC
[ENA]
¢þ
>WENV183307348
OLTF01000337
[OLTF] human gut metagenome; faeces
508
582
+
Thr
TGT
[ENA]
¢þ
>WENV183307385
OLTF01002621
[OLTF] human gut metagenome; faeces
516
430
-
Leu
CAA
[ENA]
¢þ
>WENV183307374
OLTF01001846
[OLTF] human gut metagenome; faeces
516
589
+
Glu
CTC
[ENA]
¢þ
>WENV183307380
OLTF01002146
[OLTF] human gut metagenome; faeces
547
623
+
Arg
CCG
[ENA]
¢þ
>WENV183307388
OLTF01002693
[OLTF] human gut metagenome; faeces
562
488
-
Met
CAT
[ENA]
¢þ
>WENV183307345
OLTF01000252
[OLTF] human gut metagenome; faeces
579
668
+
Ser
TGA
[ENA]
¢þ
>WENV183307338
OLTF01000143
[OLTF] human gut metagenome; faeces
592
667
+
Thr
CGT
[ENA]
¢þ
>WENV183307381
OLTF01002467
[OLTF] human gut metagenome; faeces
616
689
+
fMet
CAT
[ENA]
¢þ
>WENV183307376
OLTF01001940
[OLTF] human gut metagenome; faeces
631
703
+
Val
TAC
[ENA]
¢þ
>WENV183307375
OLTF01001846
[OLTF] human gut metagenome; faeces
632
704
+
Gln
CTG
[ENA]
¢þ
>WENV183307387
OLTF01002693
[OLTF] human gut metagenome; faeces
642
567
-
Pro
TGG
[ENA]
¢þ
>WENV183307383
OLTF01002579
[OLTF] human gut metagenome; faeces
696
622
-
Phe
GAA
[ENA]
¢þ
>WENV183307377
OLTF01001940
[OLTF] human gut metagenome; faeces
709
791
+
Tyr
GTA
[ENA]
¢þ
>WENV183307335
OLTF01000029
[OLTF] human gut metagenome; faeces
797
711
-
Leu
CAG
[ENA]
¢þ
>WENV183307371
OLTF01001667
[OLTF] human gut metagenome; faeces
799
725
-
Ala
TGC
[ENA]
¢þ
>WENV183307353
OLTF01000470
[OLTF] human gut metagenome; faeces
851
776
-
Ile
GAT
[ENA]
¢þ
>WENV183307347
OLTF01000292
[OLTF] human gut metagenome; faeces
880
806
-
Ala
GGC
[ENA]
¢þ
>WENV183307349
OLTF01000371
[OLTF] human gut metagenome; faeces
945
1019
+
Ile
GAT
[ENA]
¢þ
>WENV183307352
OLTF01000470
[OLTF] human gut metagenome; faeces
946
873
-
Ala
TGC
[ENA]
¢þ
>WENV183307351
OLTF01000469
[OLTF] human gut metagenome; faeces
974
900
-
Ile2
CAT
[ENA]
¢þ
>WENV183307340
OLTF01000191
[OLTF] human gut metagenome; faeces
1006
1080
+
Thr
TGT
[ENA]
¢þ
>WENV183307354
OLTF01000483
[OLTF] human gut metagenome; faeces
1062
986
-
Glu
CTC
[ENA]
¢þ
>WENV183307359
OLTF01000616
[OLTF] human gut metagenome; faeces
1083
1157
+
Asp
GTC
[ENA]
¢þ
>WENV183307350
OLTF01000371
[OLTF] human gut metagenome; faeces
1089
1162
+
Ala
TGC
[ENA]
¢þ
>WENV183307333
OLTF01000010
[OLTF] human gut metagenome; faeces
1144
1068
-
fMet
CAT
[ENA]
¢þ
>WENV183307363
OLTF01000818
[OLTF] human gut metagenome; faeces
1187
1262
+
Lys
TTT
[ENA]
¢þ
>WENV183307358
OLTF01000609
[OLTF] human gut metagenome; faeces
1263
1339
+
Ala
CGC
[ENA]
¢þ
>WENV183307356
OLTF01000527
[OLTF] human gut metagenome; faeces
1439
1349
-
Ser
CGA
[ENA]
¢þ
>WENV183307355
OLTF01000527
[OLTF] human gut metagenome; faeces
1580
1488
-
Ser
GGA
[ENA]
¢þ
>WENV183307346
OLTF01000269
[OLTF] human gut metagenome; faeces
1826
1899
+
Gly
TCC
[ENA]
¢þ
>WENV183307341
OLTF01000200
[OLTF] human gut metagenome; faeces
1899
1973
+
Asn
GTT
[ENA]
¢þ
>WENV183307342
OLTF01000200
[OLTF] human gut metagenome; faeces
1976
2049
+
Glu
TTC
[ENA]
¢þ
>WENV183307343
OLTF01000200
[OLTF] human gut metagenome; faeces
2097
2169
+
Thr
TGT
[ENA]
¢þ
>WENV183307344
OLTF01000200
[OLTF] human gut metagenome; faeces
2190
2265
+
fMet
CAT
[ENA]
¢þ
>WENV183307337
OLTF01000103
[OLTF] human gut metagenome; faeces
2662
2738
+
Glu
TTC
[ENA]
¢þ
>WENV183307336
OLTF01000072
[OLTF] human gut metagenome; faeces
3218
3292
+
Gly
CCC
[ENA]
¢þ
>WENV183307334
OLTF01000019
[OLTF] human gut metagenome; faeces
3307
3231
-
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK