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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLTI] human gut metagenome; faeces
HIT:
75 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183307500
OLTI01000354
[OLTI] human gut metagenome; faeces
69
143
+
Asp
GTC
[ENA]
¢þ
>WENV183307551
OLTI01004317
[OLTI] human gut metagenome; faeces
75
1
-
Arg
ACG
[ENA]
¢þ
>WENV183307524
OLTI01001088
[OLTI] human gut metagenome; faeces
86
13
-
Lys
CTT
[ENA]
¢þ
>WENV183307553
OLTI01004411
[OLTI] human gut metagenome; faeces
110
36
-
Thr
GGT
[ENA]
¢þ
>WENV183307523
OLTI01001084
[OLTI] human gut metagenome; faeces
111
36
-
Lys
CTT
[ENA]
¢þ
>WENV183307539
OLTI01001738
[OLTI] human gut metagenome; faeces
112
36
-
Pro
GGG
[ENA]
¢þ
>WENV183307526
OLTI01001139
[OLTI] human gut metagenome; faeces
149
223
+
Cys
GCA
[ENA]
¢þ
>WENV183307501
OLTI01000354
[OLTI] human gut metagenome; faeces
162
235
+
Val
TAC
[ENA]
¢þ
>WENV183307545
OLTI01003365
[OLTI] human gut metagenome; faeces
169
96
-
Gly
CCC
[ENA]
¢þ
>WENV183307527
OLTI01001139
[OLTI] human gut metagenome; faeces
247
322
+
Glu
TTC
[ENA]
¢þ
>WENV183307555
OLTI01004837
[OLTI] human gut metagenome; faeces
261
349
+
Ser
CGA
[ENA]
¢þ
>WENV183307557
OLTI01005274
[OLTI] human gut metagenome; faeces
263
351
+
Ser
CGA
[ENA]
¢þ
>WENV183307502
OLTI01000354
[OLTI] human gut metagenome; faeces
265
352
+
Leu
TAA
[ENA]
¢þ
>WENV183307544
OLTI01003365
[OLTI] human gut metagenome; faeces
313
386
+
Gly
TCC
[ENA]
¢þ
>WENV183307541
OLTI01002255
[OLTI] human gut metagenome; faeces
314
399
+
Leu
CAG
[ENA]
¢þ
>WENV183307552
OLTI01004383
[OLTI] human gut metagenome; faeces
331
406
+
Arg
CCT
[ENA]
¢þ
>WENV183307559
OLTI01005405
[OLTI] human gut metagenome; faeces
350
278
-
Cys
GCA
[ENA]
¢þ
>WENV183307554
OLTI01004533
[OLTI] human gut metagenome; faeces
363
291
-
Glu
CTC
[ENA]
¢þ
>WENV183307560
OLTI01005632
[OLTI] human gut metagenome; faeces
379
453
+
Gly
GCC
[ENA]
¢þ
>WENV183307546
OLTI01003478
[OLTI] human gut metagenome; faeces
380
462
+
Leu
TAG
[ENA]
¢þ
>WENV183307549
OLTI01003948
[OLTI] human gut metagenome; faeces
382
306
-
Ile
GAT
[ENA]
¢þ
>WENV183307515
OLTI01000599
[OLTI] human gut metagenome; faeces
383
455
+
Thr
GGT
[ENA]
¢þ
>WENV183307503
OLTI01000354
[OLTI] human gut metagenome; faeces
399
473
+
Arg
ACG
[ENA]
¢þ
>WENV183307520
OLTI01000946
[OLTI] human gut metagenome; faeces
411
486
+
Phe
GAA
[ENA]
¢þ
>WENV183307486
OLTI01000013
[OLTI] human gut metagenome; faeces
420
492
+
Asn
GTT
[ENA]
¢þ
>WENV183307543
OLTI01002479
[OLTI] human gut metagenome; faeces
458
544
+
Leu
AAG
[ENA]
¢þ
>WENV183307548
OLTI01003948
[OLTI] human gut metagenome; faeces
461
386
-
Ala
TGC
[ENA]
¢þ
>WENV183307558
OLTI01005405
[OLTI] human gut metagenome; faeces
461
389
-
Glu
TTC
[ENA]
¢þ
>WENV183307556
OLTI01005160
[OLTI] human gut metagenome; faeces
478
403
-
Gly
GCC
[ENA]
¢þ
>WENV183307534
OLTI01001605
[OLTI] human gut metagenome; faeces
494
565
+
Thr
GGT
[ENA]
¢þ
>WENV183307550
OLTI01004051
[OLTI] human gut metagenome; faeces
506
580
+
Thr
TGT
[ENA]
¢þ
>WENV183307517
OLTI01000690
[OLTI] human gut metagenome; faeces
523
597
+
Pro
CGG
[ENA]
¢þ
>WENV183307521
OLTI01001030
[OLTI] human gut metagenome; faeces
535
605
+
Gly
TCC
[ENA]
¢þ
>WENV183307487
OLTI01000013
[OLTI] human gut metagenome; faeces
540
611
+
Glu
TTC
[ENA]
¢þ
>WENV183307547
OLTI01003478
[OLTI] human gut metagenome; faeces
540
614
+
Pro
TGG
[ENA]
¢þ
>WENV183307532
OLTI01001489
[OLTI] human gut metagenome; faeces
560
484
-
Ile
GAT
[ENA]
¢þ
>WENV183307535
OLTI01001718
[OLTI] human gut metagenome; faeces
605
679
+
Val
TAC
[ENA]
¢þ
>WENV183307522
OLTI01001030
[OLTI] human gut metagenome; faeces
609
681
+
Gly
GCC
[ENA]
¢þ
>WENV183307529
OLTI01001306
[OLTI] human gut metagenome; faeces
632
560
-
Gln
CTG
[ENA]
¢þ
>WENV183307488
OLTI01000013
[OLTI] human gut metagenome; faeces
644
714
+
Cys
GCA
[ENA]
¢þ
>WENV183307495
OLTI01000078
[OLTI] human gut metagenome; faeces
656
568
-
Ser
GCT
[ENA]
¢þ
>WENV183307531
OLTI01001489
[OLTI] human gut metagenome; faeces
660
585
-
Ala
TGC
[ENA]
¢þ
>WENV183307536
OLTI01001718
[OLTI] human gut metagenome; faeces
684
766
+
Tyr
GTA
[ENA]
¢þ
>WENV183307533
OLTI01001556
[OLTI] human gut metagenome; faeces
721
793
+
Arg
CCG
[ENA]
¢þ
>WENV183307489
OLTI01000013
[OLTI] human gut metagenome; faeces
757
831
+
fMet
CAT
[ENA]
¢þ
>WENV183307542
OLTI01002397
[OLTI] human gut metagenome; faeces
762
691
-
Trp
CCA
[ENA]
¢þ
>WENV183307537
OLTI01001718
[OLTI] human gut metagenome; faeces
782
856
+
Thr
TGT
[ENA]
¢þ
>WENV183307540
OLTI01001796
[OLTI] human gut metagenome; faeces
816
740
-
fMet
CAT
[ENA]
¢þ
>WENV183307519
OLTI01000885
[OLTI] human gut metagenome; faeces
816
890
+
Arg
CCG
[ENA]
¢þ
>WENV183307490
OLTI01000021
[OLTI] human gut metagenome; faeces
819
745
-
Arg
ACG
[ENA]
¢þ
>WENV183307538
OLTI01001718
[OLTI] human gut metagenome; faeces
877
960
+
Tyr
GTA
[ENA]
¢þ
>WENV183307528
OLTI01001178
[OLTI] human gut metagenome; faeces
998
923
-
Lys
TTT
[ENA]
¢þ
>WENV183307530
OLTI01001363
[OLTI] human gut metagenome; faeces
1143
1072
-
Trp
CCA
[ENA]
¢þ
>WENV183307504
OLTI01000411
[OLTI] human gut metagenome; faeces
1216
1143
-
Glu
CTC
[ENA]
¢þ
>WENV183307525
OLTI01001089
[OLTI] human gut metagenome; faeces
1229
1153
-
Ile
GAT
[ENA]
¢þ
>WENV183307516
OLTI01000683
[OLTI] human gut metagenome; faeces
1291
1217
-
Arg
CCG
[ENA]
¢þ
>WENV183307518
OLTI01000789
[OLTI] human gut metagenome; faeces
1604
1686
+
Tyr
GTA
[ENA]
¢þ
>WENV183307511
OLTI01000458
[OLTI] human gut metagenome; faeces
1803
1721
-
Leu
TAG
[ENA]
¢þ
>WENV183307510
OLTI01000458
[OLTI] human gut metagenome; faeces
1981
1907
-
Lys
TTT
[ENA]
¢þ
>WENV183307514
OLTI01000581
[OLTI] human gut metagenome; faeces
2056
2131
+
Arg
CCT
[ENA]
¢þ
>WENV183307509
OLTI01000458
[OLTI] human gut metagenome; faeces
2062
1991
-
Gln
TTG
[ENA]
¢þ
>WENV183307508
OLTI01000458
[OLTI] human gut metagenome; faeces
2160
2086
-
His
GTG
[ENA]
¢þ
>WENV183307507
OLTI01000458
[OLTI] human gut metagenome; faeces
2239
2165
-
Arg
TCT
[ENA]
¢þ
>WENV183307506
OLTI01000458
[OLTI] human gut metagenome; faeces
2331
2261
-
Gly
TCC
[ENA]
¢þ
>WENV183307513
OLTI01000508
[OLTI] human gut metagenome; faeces
2360
2287
-
Lys
TTT
[ENA]
¢þ
>WENV183307512
OLTI01000508
[OLTI] human gut metagenome; faeces
2436
2366
-
Gln
CTG
[ENA]
¢þ
>WENV183307505
OLTI01000458
[OLTI] human gut metagenome; faeces
2441
2366
-
Pro
TGG
[ENA]
¢þ
>WENV183307492
OLTI01000037
[OLTI] human gut metagenome; faeces
2504
2577
+
Gly
GCC
[ENA]
¢þ
>WENV183307498
OLTI01000136
[OLTI] human gut metagenome; faeces
2995
3078
+
Leu
CAA
[ENA]
¢þ
>WENV183307491
OLTI01000024
[OLTI] human gut metagenome; faeces
5546
5616
+
Gly
TCC
[ENA]
¢þ
>WENV183307499
OLTI01000142
[OLTI] human gut metagenome; faeces
5611
5539
-
Thr
CGT
[ENA]
¢þ
>WENV183307496
OLTI01000125
[OLTI] human gut metagenome; faeces
5923
6010
+
Ser
TGA
[ENA]
¢þ
>WENV183307497
OLTI01000125
[OLTI] human gut metagenome; faeces
6038
6128
+
Ser
GGA
[ENA]
¢þ
>WENV183307494
OLTI01000060
[OLTI] human gut metagenome; faeces
7382
7299
-
Leu
CAG
[ENA]
¢þ
>WENV183307493
OLTI01000060
[OLTI] human gut metagenome; faeces
7472
7387
-
Leu
AAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK