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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLTL] human gut metagenome; faeces
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183307676
OLTL01000294
[OLTL] human gut metagenome; faeces
139
63
-
Val
TAC
[ENA]
¢þ
>WENV183307667
OLTL01000174
[OLTL] human gut metagenome; faeces
150
75
-
Phe
GAA
[ENA]
¢þ
>WENV183307658
OLTL01000103
[OLTL] human gut metagenome; faeces
176
100
-
Val
CAC
[ENA]
¢þ
>WENV183307665
OLTL01000160
[OLTL] human gut metagenome; faeces
179
95
-
Tyr
GTA
[ENA]
¢þ
>WENV183307682
OLTL01000564
[OLTL] human gut metagenome; faeces
194
269
+
Ala
TGC
[ENA]
¢þ
>WENV183307666
OLTL01000174
[OLTL] human gut metagenome; faeces
230
154
-
Asp
GTC
[ENA]
¢þ
>WENV183307683
OLTL01000564
[OLTL] human gut metagenome; faeces
273
349
+
Ile
GAT
[ENA]
¢þ
>WENV183307664
OLTL01000160
[OLTL] human gut metagenome; faeces
274
199
-
Thr
TGT
[ENA]
¢þ
>WENV183307657
OLTL01000103
[OLTL] human gut metagenome; faeces
281
207
-
Glu
TTC
[ENA]
¢þ
>WENV183307656
OLTL01000103
[OLTL] human gut metagenome; faeces
405
329
-
Met
CAT
[ENA]
¢þ
>WENV183307662
OLTL01000138
[OLTL] human gut metagenome; faeces
834
921
+
Leu
CAG
[ENA]
¢þ
>WENV183307681
OLTL01000518
[OLTL] human gut metagenome; faeces
928
853
-
Pro
TGG
[ENA]
¢þ
>WENV183307671
OLTL01000198
[OLTL] human gut metagenome; faeces
1526
1602
+
Arg
ACG
[ENA]
¢þ
>WENV183307678
OLTL01000339
[OLTL] human gut metagenome; faeces
1703
1778
+
Thr
CGT
[ENA]
¢þ
>WENV183307668
OLTL01000175
[OLTL] human gut metagenome; faeces
1892
1801
-
Ser
GGA
[ENA]
¢þ
>WENV183307679
OLTL01000346
[OLTL] human gut metagenome; faeces
1910
1995
+
Leu
TAA
[ENA]
¢þ
>WENV183307680
OLTL01000346
[OLTL] human gut metagenome; faeces
2014
2089
+
fMet
CAT
[ENA]
¢þ
>WENV183307677
OLTL01000331
[OLTL] human gut metagenome; faeces
2136
2211
+
Lys
CTT
[ENA]
¢þ
>WENV183307659
OLTL01000112
[OLTL] human gut metagenome; faeces
2373
2448
+
Lys
CTT
[ENA]
¢þ
>WENV183307660
OLTL01000112
[OLTL] human gut metagenome; faeces
2491
2565
+
Glu
CTC
[ENA]
¢þ
>WENV183307674
OLTL01000239
[OLTL] human gut metagenome; faeces
2583
2658
+
Pro
CGG
[ENA]
¢þ
>WENV183307673
OLTL01000224
[OLTL] human gut metagenome; faeces
2924
2849
-
Ala
TGC
[ENA]
¢þ
>WENV183307672
OLTL01000224
[OLTL] human gut metagenome; faeces
3021
2945
-
Ile
GAT
[ENA]
¢þ
>WENV183307675
OLTL01000251
[OLTL] human gut metagenome; faeces
3096
3021
-
Thr
GGT
[ENA]
¢þ
>WENV183307645
OLTL01000026
[OLTL] human gut metagenome; faeces
3144
3068
-
Pro
GGG
[ENA]
¢þ
>WENV183307643
OLTL01000026
[OLTL] human gut metagenome; faeces
3313
3400
+
Ser
TGA
[ENA]
¢þ
>WENV183307644
OLTL01000026
[OLTL] human gut metagenome; faeces
3417
3508
+
Ser
GCT
[ENA]
¢þ
>WENV183307670
OLTL01000192
[OLTL] human gut metagenome; faeces
3591
3515
-
Arg
CCG
[ENA]
¢þ
>WENV183307647
OLTL01000053
[OLTL] human gut metagenome; faeces
3805
3879
+
Gly
TCC
[ENA]
¢þ
>WENV183307669
OLTL01000189
[OLTL] human gut metagenome; faeces
3880
3955
+
Gly
GCC
[ENA]
¢þ
>WENV183307648
OLTL01000053
[OLTL] human gut metagenome; faeces
3893
3969
+
Arg
TCT
[ENA]
¢þ
>WENV183307649
OLTL01000053
[OLTL] human gut metagenome; faeces
4013
4089
+
His
GTG
[ENA]
¢þ
>WENV183307663
OLTL01000144
[OLTL] human gut metagenome; faeces
4028
3955
-
Gln
CTG
[ENA]
¢þ
>WENV183307650
OLTL01000053
[OLTL] human gut metagenome; faeces
4142
4216
+
Gln
TTG
[ENA]
¢þ
>WENV183307651
OLTL01000053
[OLTL] human gut metagenome; faeces
4257
4332
+
Lys
TTT
[ENA]
¢þ
>WENV183307654
OLTL01000086
[OLTL] human gut metagenome; faeces
5385
5310
-
Val
GAC
[ENA]
¢þ
>WENV183307661
OLTL01000133
[OLTL] human gut metagenome; faeces
5683
5769
+
Leu
GAG
[ENA]
¢þ
>WENV183307641
OLTL01000021
[OLTL] human gut metagenome; faeces
5800
5875
+
Ala
CGC
[ENA]
¢þ
>WENV183307655
OLTL01000093
[OLTL] human gut metagenome; faeces
6483
6558
+
Ala
GGC
[ENA]
¢þ
>WENV183307653
OLTL01000070
[OLTL] human gut metagenome; faeces
7630
7704
+
Cys
GCA
[ENA]
¢þ
>WENV183307652
OLTL01000060
[OLTL] human gut metagenome; faeces
7939
8031
+
Ser
CGA
[ENA]
¢þ
>WENV183307646
OLTL01000038
[OLTL] human gut metagenome; faeces
10646
10562
-
Leu
TAG
[ENA]
¢þ
>WENV183307642
OLTL01000023
[OLTL] human gut metagenome; faeces
12795
12868
+
Gly
CCC
[ENA]
¢þ
>WENV183307640
OLTL01000003
[OLTL] human gut metagenome; faeces
24510
24424
-
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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