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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OLTM] human gut metagenome; faeces
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183307702
OLTM01000489
[OLTM] human gut metagenome; faeces
80
5
-
Thr
GGT
[ENA]
¢þ
>WENV183307704
OLTM01000668
[OLTM] human gut metagenome; faeces
133
208
+
Pro
CGG
[ENA]
¢þ
>WENV183307701
OLTM01000489
[OLTM] human gut metagenome; faeces
160
84
-
Asp
GTC
[ENA]
¢þ
>WENV183307714
OLTM01002143
[OLTM] human gut metagenome; faeces
194
101
-
Ser
GCT
[ENA]
¢þ
>WENV183307715
OLTM01002188
[OLTM] human gut metagenome; faeces
207
290
+
Leu
GAG
[ENA]
¢þ
>WENV183307710
OLTM01001433
[OLTM] human gut metagenome; faeces
218
144
-
Ile2
CAT
[ENA]
¢þ
>WENV183307697
OLTM01000483
[OLTM] human gut metagenome; faeces
219
309
+
Ser
TGA
[ENA]
¢þ
>WENV183307709
OLTM01001033
[OLTM] human gut metagenome; faeces
224
152
-
Phe
GAA
[ENA]
¢þ
>WENV183307713
OLTM01002143
[OLTM] human gut metagenome; faeces
316
229
-
Ser
TGA
[ENA]
¢þ
>WENV183307700
OLTM01000489
[OLTM] human gut metagenome; faeces
323
248
-
Gly
GCC
[ENA]
¢þ
>WENV183307708
OLTM01000908
[OLTM] human gut metagenome; faeces
347
275
-
Cys
GCA
[ENA]
¢þ
>WENV183307698
OLTM01000483
[OLTM] human gut metagenome; faeces
352
442
+
Ser
GCT
[ENA]
¢þ
>WENV183307694
OLTM01000459
[OLTM] human gut metagenome; faeces
401
477
+
Met
CAT
[ENA]
¢þ
>WENV183307711
OLTM01001711
[OLTM] human gut metagenome; faeces
422
498
+
Asp
GTC
[ENA]
¢þ
>WENV183307699
OLTM01000489
[OLTM] human gut metagenome; faeces
436
361
-
Phe
GAA
[ENA]
¢þ
>WENV183307706
OLTM01000711
[OLTM] human gut metagenome; faeces
440
369
-
Glu
TTC
[ENA]
¢þ
>WENV183307692
OLTM01000241
[OLTM] human gut metagenome; faeces
453
380
-
Gly
GCC
[ENA]
¢þ
>WENV183307707
OLTM01000908
[OLTM] human gut metagenome; faeces
456
383
-
Asn
GTT
[ENA]
¢þ
>WENV183307712
OLTM01002046
[OLTM] human gut metagenome; faeces
460
384
-
Pro
GGG
[ENA]
¢þ
>WENV183307703
OLTM01000552
[OLTM] human gut metagenome; faeces
463
537
+
Glu
CTC
[ENA]
¢þ
>WENV183307693
OLTM01000276
[OLTM] human gut metagenome; faeces
501
576
+
Val
GAC
[ENA]
¢þ
>WENV183307705
OLTM01000711
[OLTM] human gut metagenome; faeces
526
455
-
Asn
GTT
[ENA]
¢þ
>WENV183307691
OLTM01000241
[OLTM] human gut metagenome; faeces
527
457
-
Gly
TCC
[ENA]
¢þ
>WENV183307695
OLTM01000459
[OLTM] human gut metagenome; faeces
569
643
+
Glu
TTC
[ENA]
¢þ
>WENV183307690
OLTM01000241
[OLTM] human gut metagenome; faeces
608
533
-
Pro
TGG
[ENA]
¢þ
>WENV183307685
OLTM01000093
[OLTM] human gut metagenome; faeces
620
695
+
Ala
TGC
[ENA]
¢þ
>WENV183307696
OLTM01000459
[OLTM] human gut metagenome; faeces
673
749
+
Val
CAC
[ENA]
¢þ
>WENV183307686
OLTM01000093
[OLTM] human gut metagenome; faeces
699
775
+
Ile
GAT
[ENA]
¢þ
>WENV183307689
OLTM01000241
[OLTM] human gut metagenome; faeces
803
723
-
Leu
TAG
[ENA]
¢þ
>WENV183307688
OLTM01000148
[OLTM] human gut metagenome; faeces
1048
974
-
Ile
GAT
[ENA]
¢þ
>WENV183307687
OLTM01000148
[OLTM] human gut metagenome; faeces
1144
1071
-
Ala
TGC
[ENA]
¢þ
>WENV183307684
OLTM01000009
[OLTM] human gut metagenome; faeces
2463
2388
-
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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