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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OLTR] human gut metagenome; faeces
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183307861
OLTR01001433
[OLTR] human gut metagenome; faeces
41
115
+
Phe
GAA
[ENA]
¢þ
>WENV183307851
OLTR01000378
[OLTR] human gut metagenome; faeces
117
46
-
Gln
TTG
[ENA]
¢þ
>WENV183307862
OLTR01001433
[OLTR] human gut metagenome; faeces
145
220
+
Lys
TTT
[ENA]
¢þ
>WENV183307855
OLTR01000620
[OLTR] human gut metagenome; faeces
176
250
+
Val
GAC
[ENA]
¢þ
>WENV183307856
OLTR01000839
[OLTR] human gut metagenome; faeces
181
91
-
Ser
GGA
[ENA]
¢þ
>WENV183307848
OLTR01000351
[OLTR] human gut metagenome; faeces
183
96
-
Leu
CAG
[ENA]
¢þ
>WENV183307863
OLTR01001433
[OLTR] human gut metagenome; faeces
225
315
+
Ser
TGA
[ENA]
¢þ
>WENV183307850
OLTR01000378
[OLTR] human gut metagenome; faeces
258
185
-
His
GTG
[ENA]
¢þ
>WENV183307847
OLTR01000351
[OLTR] human gut metagenome; faeces
271
189
-
Tyr
GTA
[ENA]
¢þ
>WENV183307866
OLTR01001451
[OLTR] human gut metagenome; faeces
293
221
-
Cys
GCA
[ENA]
¢þ
>WENV183307852
OLTR01000379
[OLTR] human gut metagenome; faeces
293
368
+
Thr
GGT
[ENA]
¢þ
>WENV183307834
OLTR01000044
[OLTR] human gut metagenome; faeces
353
281
-
Asn
GTT
[ENA]
¢þ
>WENV183307864
OLTR01001433
[OLTR] human gut metagenome; faeces
356
446
+
Ser
GCT
[ENA]
¢þ
>WENV183307846
OLTR01000351
[OLTR] human gut metagenome; faeces
375
300
-
Thr
TGT
[ENA]
¢þ
>WENV183307853
OLTR01000436
[OLTR] human gut metagenome; faeces
400
483
+
Leu
CAA
[ENA]
¢þ
>WENV183307859
OLTR01001127
[OLTR] human gut metagenome; faeces
406
477
+
Gln
CTG
[ENA]
¢þ
>WENV183307833
OLTR01000025
[OLTR] human gut metagenome; faeces
420
345
-
Lys
CTT
[ENA]
¢þ
>WENV183307857
OLTR01000859
[OLTR] human gut metagenome; faeces
420
494
+
Glu
TTC
[ENA]
¢þ
>WENV183307835
OLTR01000050
[OLTR] human gut metagenome; faeces
427
503
+
fMet
CAT
[ENA]
¢þ
>WENV183307860
OLTR01001264
[OLTR] human gut metagenome; faeces
436
511
+
Val
GAC
[ENA]
¢þ
>WENV183307839
OLTR01000127
[OLTR] human gut metagenome; faeces
451
527
+
Arg
CCT
[ENA]
¢þ
>WENV183307865
OLTR01001451
[OLTR] human gut metagenome; faeces
463
390
-
Phe
GAA
[ENA]
¢þ
>WENV183307849
OLTR01000378
[OLTR] human gut metagenome; faeces
477
390
-
Leu
TAA
[ENA]
¢þ
>WENV183307842
OLTR01000194
[OLTR] human gut metagenome; faeces
492
567
+
Lys
CTT
[ENA]
¢þ
>WENV183307845
OLTR01000351
[OLTR] human gut metagenome; faeces
495
419
-
Asp
GTC
[ENA]
¢þ
>WENV183307858
OLTR01000859
[OLTR] human gut metagenome; faeces
504
591
+
Leu
TAA
[ENA]
¢þ
>WENV183307854
OLTR01000550
[OLTR] human gut metagenome; faeces
603
679
+
Asp
GTC
[ENA]
¢þ
>WENV183307836
OLTR01000050
[OLTR] human gut metagenome; faeces
616
690
+
Glu
CTC
[ENA]
¢þ
>WENV183307844
OLTR01000351
[OLTR] human gut metagenome; faeces
659
584
-
Gly
GCC
[ENA]
¢þ
>WENV183307843
OLTR01000351
[OLTR] human gut metagenome; faeces
772
697
-
Phe
GAA
[ENA]
¢þ
>WENV183307841
OLTR01000133
[OLTR] human gut metagenome; faeces
831
755
-
Ile
GAT
[ENA]
¢þ
>WENV183307837
OLTR01000050
[OLTR] human gut metagenome; faeces
881
956
+
Ala
TGC
[ENA]
¢þ
>WENV183307840
OLTR01000133
[OLTR] human gut metagenome; faeces
910
835
-
Ala
TGC
[ENA]
¢þ
>WENV183307838
OLTR01000059
[OLTR] human gut metagenome; faeces
1282
1193
-
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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