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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLUN] human gut metagenome; faeces
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183308986
OLUN01002713
[OLUN] human gut metagenome; faeces
20
93
+
Val
CAC
[ENA]
¢þ
>WENV183308969
OLUN01001130
[OLUN] human gut metagenome; faeces
58
134
+
Pro
TGG
[ENA]
¢þ
>WENV183308987
OLUN01002713
[OLUN] human gut metagenome; faeces
126
199
+
Gly
GCC
[ENA]
¢þ
>WENV183308970
OLUN01001130
[OLUN] human gut metagenome; faeces
141
214
+
Gly
TCC
[ENA]
¢þ
>WENV183308964
OLUN01000325
[OLUN] human gut metagenome; faeces
176
103
-
Glu
CTC
[ENA]
¢þ
>WENV183308973
OLUN01001245
[OLUN] human gut metagenome; faeces
203
278
+
Ala
TGC
[ENA]
¢þ
>WENV183308976
OLUN01001321
[OLUN] human gut metagenome; faeces
239
315
+
Met
CAT
[ENA]
¢þ
>WENV183308974
OLUN01001245
[OLUN] human gut metagenome; faeces
282
358
+
Ile
GAT
[ENA]
¢þ
>WENV183308975
OLUN01001258
[OLUN] human gut metagenome; faeces
288
364
+
fMet
CAT
[ENA]
¢þ
>WENV183308984
OLUN01001993
[OLUN] human gut metagenome; faeces
339
246
-
Ser
GCT
[ENA]
¢þ
>WENV183308988
OLUN01002873
[OLUN] human gut metagenome; faeces
345
419
+
Glu
CTC
[ENA]
¢þ
>WENV183308965
OLUN01000612
[OLUN] human gut metagenome; faeces
356
440
+
Leu
TAA
[ENA]
¢þ
>WENV183308979
OLUN01001446
[OLUN] human gut metagenome; faeces
398
323
-
Arg
CCT
[ENA]
¢þ
>WENV183308967
OLUN01000864
[OLUN] human gut metagenome; faeces
400
475
+
Ala
GGC
[ENA]
¢þ
>WENV183308972
OLUN01001130
[OLUN] human gut metagenome; faeces
418
346
-
Glu
TTC
[ENA]
¢þ
>WENV183308980
OLUN01001509
[OLUN] human gut metagenome; faeces
423
350
-
Glu
TTC
[ENA]
¢þ
>WENV183308989
OLUN01002873
[OLUN] human gut metagenome; faeces
423
498
+
Lys
CTT
[ENA]
¢þ
>WENV183308983
OLUN01001993
[OLUN] human gut metagenome; faeces
461
374
-
Ser
TGA
[ENA]
¢þ
>WENV183308977
OLUN01001321
[OLUN] human gut metagenome; faeces
464
537
+
Asn
GTT
[ENA]
¢þ
>WENV183308982
OLUN01001604
[OLUN] human gut metagenome; faeces
518
443
-
Thr
GGT
[ENA]
¢þ
>WENV183308971
OLUN01001130
[OLUN] human gut metagenome; faeces
542
470
-
Asn
GTT
[ENA]
¢þ
>WENV183308985
OLUN01002388
[OLUN] human gut metagenome; faeces
549
458
-
Ser
CGA
[ENA]
¢þ
>WENV183308978
OLUN01001321
[OLUN] human gut metagenome; faeces
573
645
+
Cys
GCA
[ENA]
¢þ
>WENV183308981
OLUN01001604
[OLUN] human gut metagenome; faeces
598
522
-
Asp
GTC
[ENA]
¢þ
>WENV183308968
OLUN01000972
[OLUN] human gut metagenome; faeces
624
710
+
Leu
CAG
[ENA]
¢þ
>WENV183308960
OLUN01000024
[OLUN] human gut metagenome; faeces
668
743
+
Lys
CTT
[ENA]
¢þ
>WENV183308966
OLUN01000643
[OLUN] human gut metagenome; faeces
861
786
-
Thr
CGT
[ENA]
¢þ
>WENV183308963
OLUN01000076
[OLUN] human gut metagenome; faeces
1745
1818
+
Lys
CTT
[ENA]
¢þ
>WENV183308962
OLUN01000061
[OLUN] human gut metagenome; faeces
1877
1801
-
Ile
GAT
[ENA]
¢þ
>WENV183308961
OLUN01000061
[OLUN] human gut metagenome; faeces
1988
1913
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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