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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OLUT] human gut metagenome; faeces
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183309250
OLUT01000226
[OLUT] human gut metagenome; faeces
40
115
+
Val
GAC
[ENA]
¢þ
>WENV183309268
OLUT01002215
[OLUT] human gut metagenome; faeces
89
164
+
Ala
GGC
[ENA]
¢þ
>WENV183309256
OLUT01001001
[OLUT] human gut metagenome; faeces
90
161
+
Gln
TTG
[ENA]
¢þ
>WENV183309263
OLUT01001905
[OLUT] human gut metagenome; faeces
92
167
+
Ala
TGC
[ENA]
¢þ
>WENV183309257
OLUT01001017
[OLUT] human gut metagenome; faeces
101
29
-
Glu
TTC
[ENA]
¢þ
>WENV183309253
OLUT01000847
[OLUT] human gut metagenome; faeces
154
82
-
Glu
CTC
[ENA]
¢þ
>WENV183309261
OLUT01001753
[OLUT] human gut metagenome; faeces
187
273
+
Leu
CAA
[ENA]
¢þ
>WENV183309264
OLUT01001905
[OLUT] human gut metagenome; faeces
201
277
+
Ile
GAT
[ENA]
¢þ
>WENV183309267
OLUT01002125
[OLUT] human gut metagenome; faeces
277
364
+
Leu
TAA
[ENA]
¢þ
>WENV183309269
OLUT01002303
[OLUT] human gut metagenome; faeces
311
386
+
Pro
CGG
[ENA]
¢þ
>WENV183309266
OLUT01002110
[OLUT] human gut metagenome; faeces
334
407
+
Phe
GAA
[ENA]
¢þ
>WENV183309259
OLUT01001559
[OLUT] human gut metagenome; faeces
381
455
+
Thr
TGT
[ENA]
¢þ
>WENV183309249
OLUT01000155
[OLUT] human gut metagenome; faeces
407
482
+
Ile2
CAT
[ENA]
¢þ
>WENV183309258
OLUT01001371
[OLUT] human gut metagenome; faeces
449
537
+
Ser
GGA
[ENA]
¢þ
>WENV183309262
OLUT01001798
[OLUT] human gut metagenome; faeces
488
563
+
Pro
GGG
[ENA]
¢þ
>WENV183309251
OLUT01000259
[OLUT] human gut metagenome; faeces
514
588
+
Met
CAT
[ENA]
¢þ
>WENV183309260
OLUT01001559
[OLUT] human gut metagenome; faeces
519
602
+
Tyr
GTA
[ENA]
¢þ
>WENV183309265
OLUT01002103
[OLUT] human gut metagenome; faeces
539
467
-
Arg
CCT
[ENA]
¢þ
>WENV183309255
OLUT01000942
[OLUT] human gut metagenome; faeces
624
549
-
His
GTG
[ENA]
¢þ
>WENV183309254
OLUT01000881
[OLUT] human gut metagenome; faeces
769
693
-
Asp
GTC
[ENA]
¢þ
>WENV183309246
OLUT01000040
[OLUT] human gut metagenome; faeces
835
909
+
Arg
TCT
[ENA]
¢þ
>WENV183309252
OLUT01000272
[OLUT] human gut metagenome; faeces
1685
1767
+
Leu
CAG
[ENA]
¢þ
>WENV183309247
OLUT01000043
[OLUT] human gut metagenome; faeces
1781
1855
+
Ile
GAT
[ENA]
¢þ
>WENV183309248
OLUT01000120
[OLUT] human gut metagenome; faeces
2340
2267
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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