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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLUX] human gut metagenome; faeces
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183309403
OLUX01000380
[OLUX] human gut metagenome; faeces
65
138
+
Gly
TCC
[ENA]
¢þ
>WENV183309415
OLUX01000814
[OLUX] human gut metagenome; faeces
94
18
-
Pro
CGG
[ENA]
¢þ
>WENV183309421
OLUX01001230
[OLUX] human gut metagenome; faeces
144
69
-
Lys
CTT
[ENA]
¢þ
>WENV183309390
OLUX01000030
[OLUX] human gut metagenome; faeces
172
98
-
Thr
CGT
[ENA]
¢þ
>WENV183309398
OLUX01000207
[OLUX] human gut metagenome; faeces
182
108
-
Gly
GCC
[ENA]
¢þ
>WENV183309394
OLUX01000108
[OLUX] human gut metagenome; faeces
309
383
+
Gln
TTG
[ENA]
¢þ
>WENV183309418
OLUX01000931
[OLUX] human gut metagenome; faeces
317
241
-
Pro
TGG
[ENA]
¢þ
>WENV183309411
OLUX01000761
[OLUX] human gut metagenome; faeces
354
429
+
Ala
TGC
[ENA]
¢þ
>WENV183309419
OLUX01000961
[OLUX] human gut metagenome; faeces
407
494
+
Ser
TGA
[ENA]
¢þ
>WENV183309417
OLUX01000931
[OLUX] human gut metagenome; faeces
428
353
-
Phe
GAA
[ENA]
¢þ
>WENV183309420
OLUX01001140
[OLUX] human gut metagenome; faeces
433
362
-
Cys
GCA
[ENA]
¢þ
>WENV183309412
OLUX01000761
[OLUX] human gut metagenome; faeces
433
509
+
Ile
GAT
[ENA]
¢þ
>WENV183309413
OLUX01000769
[OLUX] human gut metagenome; faeces
469
545
+
Ile2
CAT
[ENA]
¢þ
>WENV183309397
OLUX01000166
[OLUX] human gut metagenome; faeces
481
405
-
Pro
GGG
[ENA]
¢þ
>WENV183309409
OLUX01000665
[OLUX] human gut metagenome; faeces
499
425
-
Thr
TGT
[ENA]
¢þ
>WENV183309393
OLUX01000061
[OLUX] human gut metagenome; faeces
677
603
-
Asn
GTT
[ENA]
¢þ
>WENV183309416
OLUX01000856
[OLUX] human gut metagenome; faeces
760
834
+
Val
GAC
[ENA]
¢þ
>WENV183309414
OLUX01000769
[OLUX] human gut metagenome; faeces
765
841
+
fMet
CAT
[ENA]
¢þ
>WENV183309404
OLUX01000416
[OLUX] human gut metagenome; faeces
910
834
-
Ile
GAT
[ENA]
¢þ
>WENV183309401
OLUX01000311
[OLUX] human gut metagenome; faeces
972
1046
+
Thr
GGT
[ENA]
¢þ
>WENV183309410
OLUX01000693
[OLUX] human gut metagenome; faeces
1281
1356
+
Ile2
CAT
[ENA]
¢þ
>WENV183309408
OLUX01000624
[OLUX] human gut metagenome; faeces
1383
1308
-
Lys
TTT
[ENA]
¢þ
>WENV183309405
OLUX01000419
[OLUX] human gut metagenome; faeces
1454
1529
+
Ala
CGC
[ENA]
¢þ
>WENV183309407
OLUX01000486
[OLUX] human gut metagenome; faeces
1560
1643
+
Leu
TAA
[ENA]
¢þ
>WENV183309400
OLUX01000284
[OLUX] human gut metagenome; faeces
1612
1530
-
Leu
CAA
[ENA]
¢þ
>WENV183309395
OLUX01000126
[OLUX] human gut metagenome; faeces
1634
1708
+
Cys
GCA
[ENA]
¢þ
>WENV183309396
OLUX01000126
[OLUX] human gut metagenome; faeces
1732
1807
+
Glu
TTC
[ENA]
¢þ
>WENV183309406
OLUX01000423
[OLUX] human gut metagenome; faeces
1980
2054
+
Val
TAC
[ENA]
¢þ
>WENV183309388
OLUX01000010
[OLUX] human gut metagenome; faeces
2117
2192
+
Ala
TGC
[ENA]
¢þ
>WENV183309389
OLUX01000010
[OLUX] human gut metagenome; faeces
2217
2293
+
Ile
GAT
[ENA]
¢þ
>WENV183309402
OLUX01000311
[OLUX] human gut metagenome; faeces
2370
2445
+
Trp
CCA
[ENA]
¢þ
>WENV183309399
OLUX01000271
[OLUX] human gut metagenome; faeces
2417
2491
+
Arg
CCT
[ENA]
¢þ
>WENV183309391
OLUX01000031
[OLUX] human gut metagenome; faeces
4227
4312
+
Tyr
GTA
[ENA]
¢þ
>WENV183309392
OLUX01000053
[OLUX] human gut metagenome; faeces
4675
4591
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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