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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLYE] human gut metagenome; feces
HIT:
49 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183379899
OLYE01001132
[OLYE] human gut metagenome; feces
23
96
+
Trp
CCA
[ENA]
¢þ
>WENV183379874
OLYE01000201
[OLYE] human gut metagenome; feces
94
21
-
Thr
CGT
[ENA]
¢þ
>WENV183379893
OLYE01000941
[OLYE] human gut metagenome; feces
97
13
-
Leu
CAG
[ENA]
¢þ
>WENV183379907
OLYE01001767
[OLYE] human gut metagenome; feces
100
13
-
Ser
CGA
[ENA]
¢þ
>WENV183379869
OLYE01000136
[OLYE] human gut metagenome; feces
116
43
-
Phe
GAA
[ENA]
¢þ
>WENV183379901
OLYE01001219
[OLYE] human gut metagenome; feces
134
221
+
Leu
CAG
[ENA]
¢þ
>WENV183379896
OLYE01001071
[OLYE] human gut metagenome; feces
137
212
+
Pro
TGG
[ENA]
¢þ
>WENV183379908
OLYE01001801
[OLYE] human gut metagenome; feces
138
213
+
Thr
TGT
[ENA]
¢þ
>WENV183379877
OLYE01000289
[OLYE] human gut metagenome; feces
141
70
-
Gln
CTG
[ENA]
¢þ
>WENV183379900
OLYE01001173
[OLYE] human gut metagenome; feces
172
245
+
Gly
GCC
[ENA]
¢þ
>WENV183379910
OLYE01001871
[OLYE] human gut metagenome; feces
190
118
-
Gly
CCC
[ENA]
¢þ
>WENV183379909
OLYE01001801
[OLYE] human gut metagenome; feces
243
327
+
Tyr
GTA
[ENA]
¢þ
>WENV183379906
OLYE01001686
[OLYE] human gut metagenome; feces
278
204
-
Glu
CTC
[ENA]
¢þ
>WENV183379878
OLYE01000308
[OLYE] human gut metagenome; feces
294
366
+
Thr
GGT
[ENA]
¢þ
>WENV183379898
OLYE01001094
[OLYE] human gut metagenome; feces
378
303
-
fMet
CAT
[ENA]
¢þ
>WENV183379880
OLYE01000358
[OLYE] human gut metagenome; feces
398
484
+
Leu
GAG
[ENA]
¢þ
>WENV183379895
OLYE01000999
[OLYE] human gut metagenome; feces
421
347
-
Met
CAT
[ENA]
¢þ
>WENV183379905
OLYE01001384
[OLYE] human gut metagenome; feces
430
354
-
Ile
GAT
[ENA]
¢þ
>WENV183379902
OLYE01001312
[OLYE] human gut metagenome; feces
439
513
+
Ile2
CAT
[ENA]
¢þ
>WENV183379881
OLYE01000513
[OLYE] human gut metagenome; feces
544
472
-
Arg
CCT
[ENA]
¢þ
>WENV183379904
OLYE01001384
[OLYE] human gut metagenome; feces
580
505
-
Ala
TGC
[ENA]
¢þ
>WENV183379903
OLYE01001312
[OLYE] human gut metagenome; feces
603
678
+
Pro
TGG
[ENA]
¢þ
>WENV183379897
OLYE01001071
[OLYE] human gut metagenome; feces
701
776
+
Pro
CGG
[ENA]
¢þ
>WENV183379867
OLYE01000080
[OLYE] human gut metagenome; feces
750
675
-
Pro
GGG
[ENA]
¢þ
>WENV183379886
OLYE01000654
[OLYE] human gut metagenome; feces
905
981
+
Asp
GTC
[ENA]
¢þ
>WENV183379885
OLYE01000651
[OLYE] human gut metagenome; feces
945
1019
+
Ile2
CAT
[ENA]
¢þ
>WENV183379865
OLYE01000066
[OLYE] human gut metagenome; feces
979
1051
+
Glu
CTC
[ENA]
¢þ
>WENV183379890
OLYE01000759
[OLYE] human gut metagenome; feces
1178
1105
-
Lys
TTT
[ENA]
¢þ
>WENV183379894
OLYE01000966
[OLYE] human gut metagenome; feces
1357
1271
-
Leu
TAA
[ENA]
¢þ
>WENV183379887
OLYE01000682
[OLYE] human gut metagenome; feces
1391
1320
-
Cys
GCA
[ENA]
¢þ
>WENV183379891
OLYE01000776
[OLYE] human gut metagenome; feces
1408
1494
+
Ser
TGA
[ENA]
¢þ
>WENV183379892
OLYE01000904
[OLYE] human gut metagenome; feces
1478
1392
-
Leu
TAA
[ENA]
¢þ
>WENV183379876
OLYE01000272
[OLYE] human gut metagenome; feces
1586
1503
-
Tyr
GTA
[ENA]
¢þ
>WENV183379863
OLYE01000050
[OLYE] human gut metagenome; feces
1612
1529
-
Leu
TAG
[ENA]
¢þ
>WENV183379888
OLYE01000704
[OLYE] human gut metagenome; feces
1629
1703
+
Asn
GTT
[ENA]
¢þ
>WENV183379875
OLYE01000272
[OLYE] human gut metagenome; feces
1777
1703
-
Thr
TGT
[ENA]
¢þ
>WENV183379879
OLYE01000348
[OLYE] human gut metagenome; feces
1836
1765
-
Gln
TTG
[ENA]
¢þ
>WENV183379889
OLYE01000704
[OLYE] human gut metagenome; feces
1838
1913
+
Val
TAC
[ENA]
¢þ
>WENV183379884
OLYE01000626
[OLYE] human gut metagenome; feces
2098
2024
-
Ala
GGC
[ENA]
¢þ
>WENV183379883
OLYE01000580
[OLYE] human gut metagenome; feces
2124
2050
-
Ala
TGC
[ENA]
¢þ
>WENV183379882
OLYE01000580
[OLYE] human gut metagenome; feces
2208
2134
-
Ile
GAT
[ENA]
¢þ
>WENV183379873
OLYE01000200
[OLYE] human gut metagenome; feces
2252
2180
-
Gln
TTG
[ENA]
¢þ
>WENV183379872
OLYE01000200
[OLYE] human gut metagenome; feces
2660
2575
-
Ser
ACT
[ENA]
¢þ
>WENV183379871
OLYE01000197
[OLYE] human gut metagenome; feces
2988
2904
-
Leu
CAA
[ENA]
¢þ
>WENV183379870
OLYE01000143
[OLYE] human gut metagenome; feces
4557
4629
+
Arg
CCG
[ENA]
¢þ
>WENV183379862
OLYE01000031
[OLYE] human gut metagenome; feces
4621
4698
+
Arg
TCT
[ENA]
¢þ
>WENV183379866
OLYE01000080
[OLYE] human gut metagenome; feces
4831
4903
+
Glu
TTC
[ENA]
¢þ
>WENV183379864
OLYE01000054
[OLYE] human gut metagenome; feces
5241
5153
-
Ser
GGA
[ENA]
¢þ
>WENV183379868
OLYE01000086
[OLYE] human gut metagenome; feces
5871
5946
+
His
GTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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