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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OMAH] human gut metagenome; feces
HIT:
112 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183410231
OMAH01007746
[OMAH] human gut metagenome; feces
39
112
+
Thr
TGT
[ENA]
¢þ
>WENV183410184
OMAH01001877
[OMAH] human gut metagenome; feces
68
153
+
Leu
TAA
[ENA]
¢þ
>WENV183410224
OMAH01006729
[OMAH] human gut metagenome; feces
70
145
+
Val
TAC
[ENA]
¢þ
>WENV183410157
OMAH01000396
[OMAH] human gut metagenome; feces
73
149
+
Asp
GTC
[ENA]
¢þ
>WENV183410133
OMAH01000036
[OMAH] human gut metagenome; feces
82
154
+
Thr
GGT
[ENA]
¢þ
>WENV183410169
OMAH01000782
[OMAH] human gut metagenome; feces
82
158
+
Arg
ACG
[ENA]
¢þ
>WENV183410173
OMAH01001000
[OMAH] human gut metagenome; feces
87
159
+
Thr
GGT
[ENA]
¢þ
>WENV183410206
OMAH01004480
[OMAH] human gut metagenome; feces
94
20
-
Asp
GTC
[ENA]
¢þ
>WENV183410214
OMAH01005739
[OMAH] human gut metagenome; feces
112
29
-
Leu
TAA
[ENA]
¢þ
>WENV183410167
OMAH01000619
[OMAH] human gut metagenome; feces
133
49
-
Leu
CAA
[ENA]
¢þ
>WENV183410211
OMAH01005326
[OMAH] human gut metagenome; feces
136
211
+
Gly
CCC
[ENA]
¢þ
>WENV183410217
OMAH01006100
[OMAH] human gut metagenome; feces
140
67
-
Lys
CTT
[ENA]
¢þ
>WENV183410238
OMAH01010146
[OMAH] human gut metagenome; feces
141
68
-
Pro
CGG
[ENA]
¢þ
>WENV183410158
OMAH01000396
[OMAH] human gut metagenome; feces
153
228
+
Thr
GGT
[ENA]
¢þ
>WENV183410225
OMAH01006729
[OMAH] human gut metagenome; feces
153
236
+
Tyr
GTA
[ENA]
¢þ
>WENV183410221
OMAH01006492
[OMAH] human gut metagenome; feces
157
231
+
Asp
GTC
[ENA]
¢þ
>WENV183410227
OMAH01006809
[OMAH] human gut metagenome; feces
159
69
-
Ser
GCT
[ENA]
¢þ
>WENV183410205
OMAH01004368
[OMAH] human gut metagenome; feces
178
103
-
Pro
TGG
[ENA]
¢þ
>WENV183410185
OMAH01001877
[OMAH] human gut metagenome; feces
178
251
+
Gly
GCC
[ENA]
¢þ
>WENV183410209
OMAH01004901
[OMAH] human gut metagenome; feces
179
92
-
Ser
CGA
[ENA]
¢þ
>WENV183410230
OMAH01007601
[OMAH] human gut metagenome; feces
180
105
-
His
GTG
[ENA]
¢þ
>WENV183410159
OMAH01000411
[OMAH] human gut metagenome; feces
180
254
+
Ile
GAT
[ENA]
¢þ
>WENV183410162
OMAH01000442
[OMAH] human gut metagenome; feces
183
257
+
Ile
GAT
[ENA]
¢þ
>WENV183410201
OMAH01002933
[OMAH] human gut metagenome; feces
188
112
-
Met
CAT
[ENA]
¢þ
>WENV183410200
OMAH01002336
[OMAH] human gut metagenome; feces
224
151
-
Gln
TTG
[ENA]
¢þ
>WENV183410216
OMAH01006100
[OMAH] human gut metagenome; feces
237
164
-
Lys
CTT
[ENA]
¢þ
>WENV183410226
OMAH01006729
[OMAH] human gut metagenome; feces
241
314
+
Gln
TTG
[ENA]
¢þ
>WENV183410235
OMAH01008129
[OMAH] human gut metagenome; feces
243
316
+
Arg
CCG
[ENA]
¢þ
>WENV183410222
OMAH01006492
[OMAH] human gut metagenome; feces
244
318
+
Arg
TCT
[ENA]
¢þ
>WENV183410237
OMAH01010146
[OMAH] human gut metagenome; feces
246
173
-
Gln
CTG
[ENA]
¢þ
>WENV183410228
OMAH01007159
[OMAH] human gut metagenome; feces
250
174
-
Arg
ACG
[ENA]
¢þ
>WENV183410236
OMAH01009021
[OMAH] human gut metagenome; feces
254
325
+
Gln
TTG
[ENA]
¢þ
>WENV183410163
OMAH01000442
[OMAH] human gut metagenome; feces
274
348
+
Ala
TGC
[ENA]
¢þ
>WENV183410193
OMAH01002271
[OMAH] human gut metagenome; feces
296
375
+
Leu
CAA
[ENA]
¢þ
>WENV183410229
OMAH01007529
[OMAH] human gut metagenome; feces
298
372
+
Lys
CTT
[ENA]
¢þ
>WENV183410220
OMAH01006359
[OMAH] human gut metagenome; feces
316
241
-
Val
GAC
[ENA]
¢þ
>WENV183410160
OMAH01000411
[OMAH] human gut metagenome; feces
317
391
+
Ala
TGC
[ENA]
¢þ
>WENV183410215
OMAH01006100
[OMAH] human gut metagenome; feces
323
251
-
Cys
GCA
[ENA]
¢þ
>WENV183410207
OMAH01004486
[OMAH] human gut metagenome; feces
340
258
-
Leu
CAA
[ENA]
¢þ
>WENV183410199
OMAH01002336
[OMAH] human gut metagenome; feces
346
272
-
His
GTG
[ENA]
¢þ
>WENV183410218
OMAH01006274
[OMAH] human gut metagenome; feces
383
307
-
Arg
CCT
[ENA]
¢þ
>WENV183410234
OMAH01007895
[OMAH] human gut metagenome; feces
390
319
-
Gly
GCC
[ENA]
¢þ
>WENV183410233
OMAH01007864
[OMAH] human gut metagenome; feces
437
349
-
Ser
GGA
[ENA]
¢þ
>WENV183410171
OMAH01000923
[OMAH] human gut metagenome; feces
447
522
+
fMet
CAT
[ENA]
¢þ
>WENV183410172
OMAH01000998
[OMAH] human gut metagenome; feces
450
524
+
Val
CAC
[ENA]
¢þ
>WENV183410183
OMAH01001872
[OMAH] human gut metagenome; feces
454
528
+
Ala
GGC
[ENA]
¢þ
>WENV183410192
OMAH01002110
[OMAH] human gut metagenome; feces
464
549
+
Ser
TGA
[ENA]
¢þ
>WENV183410213
OMAH01005669
[OMAH] human gut metagenome; feces
467
538
+
Gln
CTG
[ENA]
¢þ
>WENV183410198
OMAH01002336
[OMAH] human gut metagenome; feces
473
398
-
Arg
TCT
[ENA]
¢þ
>WENV183410212
OMAH01005581
[OMAH] human gut metagenome; feces
479
388
-
Ser
CGA
[ENA]
¢þ
>WENV183410219
OMAH01006351
[OMAH] human gut metagenome; feces
482
411
-
Gln
CTG
[ENA]
¢þ
>WENV183410203
OMAH01003422
[OMAH] human gut metagenome; feces
491
416
-
Thr
CGT
[ENA]
¢þ
>WENV183410232
OMAH01007746
[OMAH] human gut metagenome; feces
495
581
+
Leu
TAA
[ENA]
¢þ
>WENV183410223
OMAH01006710
[OMAH] human gut metagenome; feces
522
597
+
Trp
CCA
[ENA]
¢þ
>WENV183410181
OMAH01001668
[OMAH] human gut metagenome; feces
523
449
-
Ile2
CAT
[ENA]
¢þ
>WENV183410149
OMAH01000257
[OMAH] human gut metagenome; feces
524
439
-
Ser
TGA
[ENA]
¢þ
>WENV183410197
OMAH01002336
[OMAH] human gut metagenome; feces
547
477
-
Gly
TCC
[ENA]
¢þ
>WENV183410182
OMAH01001819
[OMAH] human gut metagenome; feces
561
635
+
Gly
TCC
[ENA]
¢þ
>WENV183410178
OMAH01001471
[OMAH] human gut metagenome; feces
577
504
-
Trp
CCA
[ENA]
¢þ
>WENV183410189
OMAH01002063
[OMAH] human gut metagenome; feces
588
662
+
Glu
CTC
[ENA]
¢þ
>WENV183410177
OMAH01001459
[OMAH] human gut metagenome; feces
595
510
-
Tyr
GTA
[ENA]
¢þ
>WENV183410180
OMAH01001668
[OMAH] human gut metagenome; feces
626
555
-
Glu
TTC
[ENA]
¢þ
>WENV183410210
OMAH01005283
[OMAH] human gut metagenome; feces
635
564
-
Gln
TTG
[ENA]
¢þ
>WENV183410196
OMAH01002336
[OMAH] human gut metagenome; feces
641
567
-
Phe
GAA
[ENA]
¢þ
>WENV183410208
OMAH01004493
[OMAH] human gut metagenome; feces
654
579
-
Pro
GGG
[ENA]
¢þ
>WENV183410147
OMAH01000220
[OMAH] human gut metagenome; feces
702
627
-
Lys
CTT
[ENA]
¢þ
>WENV183410190
OMAH01002063
[OMAH] human gut metagenome; feces
704
780
+
Asn
GTT
[ENA]
¢þ
>WENV183410195
OMAH01002336
[OMAH] human gut metagenome; feces
720
646
-
fMet
CAT
[ENA]
¢þ
>WENV183410179
OMAH01001668
[OMAH] human gut metagenome; feces
744
672
-
Asn
GTT
[ENA]
¢þ
>WENV183410165
OMAH01000544
[OMAH] human gut metagenome; feces
778
864
+
Leu
TAA
[ENA]
¢þ
>WENV183410186
OMAH01001904
[OMAH] human gut metagenome; feces
791
866
+
Phe
GAA
[ENA]
¢þ
>WENV183410202
OMAH01003348
[OMAH] human gut metagenome; feces
799
726
-
Thr
CGT
[ENA]
¢þ
>WENV183410191
OMAH01002077
[OMAH] human gut metagenome; feces
817
745
-
Arg
CCT
[ENA]
¢þ
>WENV183410204
OMAH01003502
[OMAH] human gut metagenome; feces
828
738
-
Ser
CGA
[ENA]
¢þ
>WENV183410187
OMAH01001904
[OMAH] human gut metagenome; feces
907
982
+
Gly
GCC
[ENA]
¢þ
>WENV183410194
OMAH01002336
[OMAH] human gut metagenome; feces
908
834
-
Val
TAC
[ENA]
¢þ
>WENV183410174
OMAH01001074
[OMAH] human gut metagenome; feces
977
1051
+
Asn
GTT
[ENA]
¢þ
>WENV183410188
OMAH01001904
[OMAH] human gut metagenome; feces
988
1063
+
Val
TAC
[ENA]
¢þ
>WENV183410176
OMAH01001454
[OMAH] human gut metagenome; feces
1070
995
-
Val
CAC
[ENA]
¢þ
>WENV183410168
OMAH01000764
[OMAH] human gut metagenome; feces
1128
1219
+
Ser
GGA
[ENA]
¢þ
>WENV183410152
OMAH01000309
[OMAH] human gut metagenome; feces
1285
1360
+
Ala
TGC
[ENA]
¢þ
>WENV183410175
OMAH01001308
[OMAH] human gut metagenome; feces
1300
1227
-
Ile2
CAT
[ENA]
¢þ
>WENV183410153
OMAH01000309
[OMAH] human gut metagenome; feces
1364
1440
+
Ile
GAT
[ENA]
¢þ
>WENV183410170
OMAH01000899
[OMAH] human gut metagenome; feces
1404
1318
-
Leu
CAG
[ENA]
¢þ
>WENV183410142
OMAH01000136
[OMAH] human gut metagenome; feces
1446
1517
+
Gln
TTG
[ENA]
¢þ
>WENV183410134
OMAH01000036
[OMAH] human gut metagenome; feces
1480
1553
+
Trp
CCA
[ENA]
¢þ
>WENV183410166
OMAH01000547
[OMAH] human gut metagenome; feces
1656
1572
-
Leu
CAA
[ENA]
¢þ
>WENV183410156
OMAH01000389
[OMAH] human gut metagenome; feces
1883
1812
-
Gly
CCC
[ENA]
¢þ
>WENV183410155
OMAH01000389
[OMAH] human gut metagenome; feces
1974
1901
-
Thr
CGT
[ENA]
¢þ
>WENV183410164
OMAH01000524
[OMAH] human gut metagenome; feces
2030
2104
+
Met
CAT
[ENA]
¢þ
>WENV183410154
OMAH01000345
[OMAH] human gut metagenome; feces
2033
2106
+
Phe
GAA
[ENA]
¢þ
>WENV183410131
OMAH01000028
[OMAH] human gut metagenome; feces
2039
2114
+
Arg
TCT
[ENA]
¢þ
>WENV183410161
OMAH01000422
[OMAH] human gut metagenome; feces
2286
2358
+
Arg
CCT
[ENA]
¢þ
>WENV183410151
OMAH01000283
[OMAH] human gut metagenome; feces
3015
2943
-
Arg
CCT
[ENA]
¢þ
>WENV183410150
OMAH01000266
[OMAH] human gut metagenome; feces
3113
3031
-
Tyr
GTA
[ENA]
¢þ
>WENV183410144
OMAH01000170
[OMAH] human gut metagenome; feces
3971
4042
+
Gln
CTG
[ENA]
¢þ
>WENV183410146
OMAH01000220
[OMAH] human gut metagenome; feces
4048
3976
-
Glu
CTC
[ENA]
¢þ
>WENV183410136
OMAH01000046
[OMAH] human gut metagenome; feces
4135
4053
-
Leu
CAA
[ENA]
¢þ
>WENV183410145
OMAH01000220
[OMAH] human gut metagenome; feces
4161
4074
-
Ser
GCT
[ENA]
¢þ
>WENV183410138
OMAH01000057
[OMAH] human gut metagenome; feces
4802
4877
+
Ile2
CAT
[ENA]
¢þ
>WENV183410148
OMAH01000229
[OMAH] human gut metagenome; feces
5146
5220
+
Asp
GTC
[ENA]
¢þ
>WENV183410140
OMAH01000066
[OMAH] human gut metagenome; feces
7272
7347
+
His
GTG
[ENA]
¢þ
>WENV183410141
OMAH01000090
[OMAH] human gut metagenome; feces
8573
8644
+
Cys
GCA
[ENA]
¢þ
>WENV183410143
OMAH01000148
[OMAH] human gut metagenome; feces
8643
8717
+
Thr
TGT
[ENA]
¢þ
>WENV183410137
OMAH01000053
[OMAH] human gut metagenome; feces
13198
13271
+
Lys
TTT
[ENA]
¢þ
>WENV183410132
OMAH01000029
[OMAH] human gut metagenome; feces
14665
14753
+
Ser
GGA
[ENA]
¢þ
>WENV183410139
OMAH01000060
[OMAH] human gut metagenome; feces
16331
16258
-
fMet
CAT
[ENA]
¢þ
>WENV183410135
OMAH01000045
[OMAH] human gut metagenome; feces
19465
19547
+
Leu
TAG
[ENA]
¢þ
>WENV183410130
OMAH01000026
[OMAH] human gut metagenome; feces
24067
24142
+
Val
TAC
[ENA]
¢þ
>WENV183410127
OMAH01000002
[OMAH] human gut metagenome; feces
35304
35230
-
Met
CAT
[ENA]
¢þ
>WENV183410129
OMAH01000003
[OMAH] human gut metagenome; feces
52876
52801
-
Pro
CGG
[ENA]
¢þ
>WENV183410128
OMAH01000003
[OMAH] human gut metagenome; feces
53038
53111
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK