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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OMAU] human gut metagenome; feces
HIT:
113 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183417361
OMAU01007907
[OMAU] human gut metagenome; feces
13
88
+
Asn
GTT
[ENA]
¢þ
>WENV183417347
OMAU01004954
[OMAU] human gut metagenome; feces
40
115
+
Pro
CGG
[ENA]
¢þ
>WENV183417326
OMAU01002639
[OMAU] human gut metagenome; feces
60
147
+
Ser
TGA
[ENA]
¢þ
>WENV183417309
OMAU01001013
[OMAU] human gut metagenome; feces
63
136
+
Gly
GCC
[ENA]
¢þ
>WENV183417313
OMAU01001280
[OMAU] human gut metagenome; feces
72
-1
-
Gly
GCC
[ENA]
¢þ
>WENV183417338
OMAU01003512
[OMAU] human gut metagenome; feces
78
3
-
Thr
CGT
[ENA]
¢þ
>WENV183417293
OMAU01000420
[OMAU] human gut metagenome; feces
82
7
-
Lys
TTT
[ENA]
¢þ
>WENV183417352
OMAU01006252
[OMAU] human gut metagenome; feces
88
160
+
Glu
TTC
[ENA]
¢þ
>WENV183417349
OMAU01005676
[OMAU] human gut metagenome; feces
92
6
-
Leu
GAG
[ENA]
¢þ
>WENV183417312
OMAU01001264
[OMAU] human gut metagenome; feces
95
10
-
Leu
TAA
[ENA]
¢þ
>WENV183417306
OMAU01000792
[OMAU] human gut metagenome; feces
97
22
-
Gly
GCC
[ENA]
¢þ
>WENV183417344
OMAU01004327
[OMAU] human gut metagenome; feces
110
27
-
Tyr
GTA
[ENA]
¢þ
>WENV183417290
OMAU01000395
[OMAU] human gut metagenome; feces
113
40
-
Gly
CCC
[ENA]
¢þ
>WENV183417345
OMAU01004647
[OMAU] human gut metagenome; feces
121
194
+
Gln
CTG
[ENA]
¢þ
>WENV183417359
OMAU01006464
[OMAU] human gut metagenome; feces
131
60
-
Gln
TTG
[ENA]
¢þ
>WENV183417271
OMAU01000113
[OMAU] human gut metagenome; feces
138
63
-
Val
GAC
[ENA]
¢þ
>WENV183417323
OMAU01002497
[OMAU] human gut metagenome; feces
149
232
+
Leu
TAG
[ENA]
¢þ
>WENV183417322
OMAU01001988
[OMAU] human gut metagenome; feces
162
69
-
Ser
GCT
[ENA]
¢þ
>WENV183417292
OMAU01000420
[OMAU] human gut metagenome; feces
162
88
-
Gln
TTG
[ENA]
¢þ
>WENV183417316
OMAU01001647
[OMAU] human gut metagenome; feces
175
257
+
Leu
TAG
[ENA]
¢þ
>WENV183417305
OMAU01000792
[OMAU] human gut metagenome; feces
176
101
-
Phe
GAA
[ENA]
¢þ
>WENV183417335
OMAU01003029
[OMAU] human gut metagenome; feces
181
107
-
Glu
CTC
[ENA]
¢þ
>WENV183417291
OMAU01000410
[OMAU] human gut metagenome; feces
181
268
+
Leu
CAG
[ENA]
¢þ
>WENV183417307
OMAU01000877
[OMAU] human gut metagenome; feces
187
112
-
Pro
CGG
[ENA]
¢þ
>WENV183417365
OMAU01010767
[OMAU] human gut metagenome; feces
192
268
+
fMet
CAT
[ENA]
¢þ
>WENV183417268
OMAU01000075
[OMAU] human gut metagenome; feces
215
140
-
Ala
CGC
[ENA]
¢þ
>WENV183417358
OMAU01006464
[OMAU] human gut metagenome; feces
220
138
-
Tyr
GTA
[ENA]
¢þ
>WENV183417315
OMAU01001480
[OMAU] human gut metagenome; feces
225
150
-
Thr
GGT
[ENA]
¢þ
>WENV183417343
OMAU01004327
[OMAU] human gut metagenome; feces
227
153
-
Thr
TGT
[ENA]
¢þ
>WENV183417348
OMAU01005233
[OMAU] human gut metagenome; feces
249
177
-
Arg
CCT
[ENA]
¢þ
>WENV183417304
OMAU01000792
[OMAU] human gut metagenome; feces
256
180
-
Asp
GTC
[ENA]
¢þ
>WENV183417334
OMAU01003029
[OMAU] human gut metagenome; feces
258
183
-
Lys
CTT
[ENA]
¢þ
>WENV183417298
OMAU01000461
[OMAU] human gut metagenome; feces
258
184
-
Thr
TGT
[ENA]
¢þ
>WENV183417337
OMAU01003117
[OMAU] human gut metagenome; feces
265
336
+
Gly
GCC
[ENA]
¢þ
>WENV183417363
OMAU01008581
[OMAU] human gut metagenome; feces
270
358
+
Ser
TGA
[ENA]
¢þ
>WENV183417321
OMAU01001988
[OMAU] human gut metagenome; feces
283
198
-
Ser
TGA
[ENA]
¢þ
>WENV183417367
OMAU01011042
[OMAU] human gut metagenome; feces
292
217
-
Trp
CCA
[ENA]
¢þ
>WENV183417357
OMAU01006464
[OMAU] human gut metagenome; feces
302
229
-
Phe
GAA
[ENA]
¢þ
>WENV183417346
OMAU01004802
[OMAU] human gut metagenome; feces
316
399
+
Ser
GCT
[ENA]
¢þ
>WENV183417311
OMAU01001180
[OMAU] human gut metagenome; feces
325
237
-
Ser
GGA
[ENA]
¢þ
>WENV183417368
OMAU01011495
[OMAU] human gut metagenome; feces
351
437
+
Leu
CAA
[ENA]
¢þ
>WENV183417317
OMAU01001929
[OMAU] human gut metagenome; feces
353
428
+
Pro
TGG
[ENA]
¢þ
>WENV183417356
OMAU01006464
[OMAU] human gut metagenome; feces
382
311
-
Gln
CTG
[ENA]
¢þ
>WENV183417342
OMAU01004123
[OMAU] human gut metagenome; feces
390
318
-
Glu
CTC
[ENA]
¢þ
>WENV183417339
OMAU01003573
[OMAU] human gut metagenome; feces
394
469
+
Ala
TGC
[ENA]
¢þ
>WENV183417360
OMAU01007074
[OMAU] human gut metagenome; feces
399
315
-
Leu
AAG
[ENA]
¢þ
>WENV183417285
OMAU01000261
[OMAU] human gut metagenome; feces
425
352
-
Gln
CTG
[ENA]
¢þ
>WENV183417362
OMAU01008417
[OMAU] human gut metagenome; feces
432
515
+
Tyr
GTA
[ENA]
¢þ
>WENV183417318
OMAU01001929
[OMAU] human gut metagenome; feces
434
504
+
Gly
TCC
[ENA]
¢þ
>WENV183417351
OMAU01006225
[OMAU] human gut metagenome; feces
451
376
-
Ala
GGC
[ENA]
¢þ
>WENV183417364
OMAU01010299
[OMAU] human gut metagenome; feces
471
400
-
Gln
TTG
[ENA]
¢þ
>WENV183417341
OMAU01003987
[OMAU] human gut metagenome; feces
473
547
+
Gly
TCC
[ENA]
¢þ
>WENV183417355
OMAU01006464
[OMAU] human gut metagenome; feces
474
388
-
Ser
TGA
[ENA]
¢þ
>WENV183417340
OMAU01003573
[OMAU] human gut metagenome; feces
494
570
+
Ile
GAT
[ENA]
¢þ
>WENV183417366
OMAU01011018
[OMAU] human gut metagenome; feces
495
422
-
Lys
CTT
[ENA]
¢þ
>WENV183417350
OMAU01005888
[OMAU] human gut metagenome; feces
514
587
+
Ala
TGC
[ENA]
¢þ
>WENV183417275
OMAU01000235
[OMAU] human gut metagenome; feces
532
603
+
Asn
GTT
[ENA]
¢þ
>WENV183417329
OMAU01002798
[OMAU] human gut metagenome; feces
548
623
+
Trp
CCA
[ENA]
¢þ
>WENV183417354
OMAU01006464
[OMAU] human gut metagenome; feces
556
481
-
Arg
ACG
[ENA]
¢þ
>WENV183417324
OMAU01002538
[OMAU] human gut metagenome; feces
608
532
-
Val
GAC
[ENA]
¢þ
>WENV183417288
OMAU01000393
[OMAU] human gut metagenome; feces
616
692
+
Ile
GAT
[ENA]
¢þ
>WENV183417295
OMAU01000452
[OMAU] human gut metagenome; feces
623
698
+
Ala
TGC
[ENA]
¢þ
>WENV183417319
OMAU01001929
[OMAU] human gut metagenome; feces
627
701
+
His
GTG
[ENA]
¢þ
>WENV183417276
OMAU01000235
[OMAU] human gut metagenome; feces
630
701
+
Glu
TTC
[ENA]
¢þ
>WENV183417331
OMAU01002816
[OMAU] human gut metagenome; feces
643
718
+
Arg
CCG
[ENA]
¢þ
>WENV183417353
OMAU01006464
[OMAU] human gut metagenome; feces
647
562
-
Ser
GCT
[ENA]
¢þ
>WENV183417296
OMAU01000452
[OMAU] human gut metagenome; feces
702
778
+
Ile
GAT
[ENA]
¢þ
>WENV183417320
OMAU01001929
[OMAU] human gut metagenome; feces
710
783
+
Gln
TTG
[ENA]
¢þ
>WENV183417289
OMAU01000393
[OMAU] human gut metagenome; feces
713
788
+
Ala
TGC
[ENA]
¢þ
>WENV183417277
OMAU01000235
[OMAU] human gut metagenome; feces
733
806
+
Ile2
CAT
[ENA]
¢þ
>WENV183417327
OMAU01002639
[OMAU] human gut metagenome; feces
744
831
+
Leu
CAG
[ENA]
¢þ
>WENV183417297
OMAU01000454
[OMAU] human gut metagenome; feces
767
691
-
Pro
GGG
[ENA]
¢þ
>WENV183417325
OMAU01002583
[OMAU] human gut metagenome; feces
822
897
+
Arg
TCT
[ENA]
¢þ
>WENV183417333
OMAU01002893
[OMAU] human gut metagenome; feces
863
938
+
Ala
GGC
[ENA]
¢þ
>WENV183417278
OMAU01000235
[OMAU] human gut metagenome; feces
869
945
+
Asp
GTC
[ENA]
¢þ
>WENV183417330
OMAU01002798
[OMAU] human gut metagenome; feces
908
984
+
Asp
GTC
[ENA]
¢þ
>WENV183417264
OMAU01000044
[OMAU] human gut metagenome; feces
910
986
+
Arg
ACG
[ENA]
¢þ
>WENV183417332
OMAU01002817
[OMAU] human gut metagenome; feces
915
990
+
Thr
CGT
[ENA]
¢þ
>WENV183417336
OMAU01003034
[OMAU] human gut metagenome; feces
916
990
+
Ala
GGC
[ENA]
¢þ
>WENV183417279
OMAU01000235
[OMAU] human gut metagenome; feces
950
1025
+
Phe
GAA
[ENA]
¢þ
>WENV183417328
OMAU01002794
[OMAU] human gut metagenome; feces
988
913
-
Ala
TGC
[ENA]
¢þ
>WENV183417280
OMAU01000235
[OMAU] human gut metagenome; feces
1031
1105
+
Gly
GCC
[ENA]
¢þ
>WENV183417281
OMAU01000235
[OMAU] human gut metagenome; feces
1111
1184
+
Cys
GCA
[ENA]
¢þ
>WENV183417302
OMAU01000654
[OMAU] human gut metagenome; feces
1166
1091
-
Ile2
CAT
[ENA]
¢þ
>WENV183417282
OMAU01000235
[OMAU] human gut metagenome; feces
1190
1277
+
Leu
TAA
[ENA]
¢þ
>WENV183417283
OMAU01000235
[OMAU] human gut metagenome; feces
1291
1364
+
Arg
ACG
[ENA]
¢þ
>WENV183417284
OMAU01000235
[OMAU] human gut metagenome; feces
1370
1445
+
Pro
TGG
[ENA]
¢þ
>WENV183417303
OMAU01000780
[OMAU] human gut metagenome; feces
1389
1474
+
Leu
TAA
[ENA]
¢þ
>WENV183417314
OMAU01001339
[OMAU] human gut metagenome; feces
1429
1354
-
Ala
TGC
[ENA]
¢þ
>WENV183417308
OMAU01000994
[OMAU] human gut metagenome; feces
1467
1381
-
Leu
CAG
[ENA]
¢þ
>WENV183417294
OMAU01000443
[OMAU] human gut metagenome; feces
1534
1459
-
Thr
GGT
[ENA]
¢þ
>WENV183417300
OMAU01000602
[OMAU] human gut metagenome; feces
1539
1623
+
Tyr
GTA
[ENA]
¢þ
>WENV183417310
OMAU01001138
[OMAU] human gut metagenome; feces
1593
1518
-
Trp
CCA
[ENA]
¢þ
>WENV183417273
OMAU01000158
[OMAU] human gut metagenome; feces
2023
1949
-
Ala
TGC
[ENA]
¢þ
>WENV183417301
OMAU01000647
[OMAU] human gut metagenome; feces
2104
2180
+
Val
TAC
[ENA]
¢þ
>WENV183417272
OMAU01000158
[OMAU] human gut metagenome; feces
2107
2033
-
Ile
GAT
[ENA]
¢þ
>WENV183417270
OMAU01000113
[OMAU] human gut metagenome; feces
2229
2145
-
Tyr
GTA
[ENA]
¢þ
>WENV183417269
OMAU01000113
[OMAU] human gut metagenome; feces
2324
2249
-
Thr
TGT
[ENA]
¢þ
>WENV183417299
OMAU01000514
[OMAU] human gut metagenome; feces
2401
2476
+
Gly
GCC
[ENA]
¢þ
>WENV183417286
OMAU01000343
[OMAU] human gut metagenome; feces
2932
3007
+
Arg
TCT
[ENA]
¢þ
>WENV183417287
OMAU01000343
[OMAU] human gut metagenome; feces
3014
3089
+
His
GTG
[ENA]
¢þ
>WENV183417274
OMAU01000203
[OMAU] human gut metagenome; feces
3373
3449
+
Arg
CCT
[ENA]
¢þ
>WENV183417261
OMAU01000021
[OMAU] human gut metagenome; feces
3746
3662
-
Leu
TAG
[ENA]
¢þ
>WENV183417262
OMAU01000033
[OMAU] human gut metagenome; feces
3890
3966
+
Arg
CCG
[ENA]
¢þ
>WENV183417260
OMAU01000012
[OMAU] human gut metagenome; feces
6022
5947
-
Lys
TTT
[ENA]
¢þ
>WENV183417259
OMAU01000012
[OMAU] human gut metagenome; feces
6137
6063
-
Gln
TTG
[ENA]
¢þ
>WENV183417258
OMAU01000012
[OMAU] human gut metagenome; feces
6266
6190
-
His
GTG
[ENA]
¢þ
>WENV183417257
OMAU01000012
[OMAU] human gut metagenome; feces
6386
6310
-
Arg
TCT
[ENA]
¢þ
>WENV183417256
OMAU01000012
[OMAU] human gut metagenome; feces
6474
6400
-
Gly
TCC
[ENA]
¢þ
>WENV183417265
OMAU01000047
[OMAU] human gut metagenome; feces
6932
7008
+
Met
CAT
[ENA]
¢þ
>WENV183417266
OMAU01000047
[OMAU] human gut metagenome; feces
7056
7130
+
Glu
TTC
[ENA]
¢þ
>WENV183417267
OMAU01000047
[OMAU] human gut metagenome; feces
7161
7237
+
Val
CAC
[ENA]
¢þ
>WENV183417263
OMAU01000039
[OMAU] human gut metagenome; feces
7374
7460
+
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK