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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OMBJ] human gut metagenome; feces
HIT:
88 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183424711
OMBJ01006383
[OMBJ] human gut metagenome; feces
4
78
+
Pro
TGG
[ENA]
¢þ
>WENV183424673
OMBJ01001981
[OMBJ] human gut metagenome; feces
20
96
+
Ile2
CAT
[ENA]
¢þ
>WENV183424681
OMBJ01002309
[OMBJ] human gut metagenome; feces
60
131
+
Asn
GTT
[ENA]
¢þ
>WENV183424653
OMBJ01000335
[OMBJ] human gut metagenome; feces
98
173
+
Trp
CCA
[ENA]
¢þ
>WENV183424667
OMBJ01000963
[OMBJ] human gut metagenome; feces
101
184
+
Leu
CAG
[ENA]
¢þ
>WENV183424652
OMBJ01000293
[OMBJ] human gut metagenome; feces
107
32
-
Glu
TTC
[ENA]
¢þ
>WENV183424654
OMBJ01000477
[OMBJ] human gut metagenome; feces
110
183
+
Asn
GTT
[ENA]
¢þ
>WENV183424674
OMBJ01001981
[OMBJ] human gut metagenome; feces
110
186
+
Asp
GTC
[ENA]
¢þ
>WENV183424690
OMBJ01002815
[OMBJ] human gut metagenome; feces
113
188
+
Asn
GTT
[ENA]
¢þ
>WENV183424643
OMBJ01000083
[OMBJ] human gut metagenome; feces
122
47
-
Thr
GGT
[ENA]
¢þ
>WENV183424694
OMBJ01003418
[OMBJ] human gut metagenome; feces
123
197
+
Ile2
CAT
[ENA]
¢þ
>WENV183424723
OMBJ01009920
[OMBJ] human gut metagenome; feces
127
203
+
Pro
GGG
[ENA]
¢þ
>WENV183424715
OMBJ01008936
[OMBJ] human gut metagenome; feces
164
239
+
fMet
CAT
[ENA]
¢þ
>WENV183424721
OMBJ01009722
[OMBJ] human gut metagenome; feces
184
112
-
Gly
GCC
[ENA]
¢þ
>WENV183424708
OMBJ01006062
[OMBJ] human gut metagenome; feces
190
108
-
Leu
TAG
[ENA]
¢þ
>WENV183424655
OMBJ01000477
[OMBJ] human gut metagenome; feces
190
263
+
Trp
CCA
[ENA]
¢þ
>WENV183424675
OMBJ01001981
[OMBJ] human gut metagenome; feces
191
266
+
Phe
GAA
[ENA]
¢þ
>WENV183424668
OMBJ01000963
[OMBJ] human gut metagenome; feces
197
270
+
Gly
GCC
[ENA]
¢þ
>WENV183424716
OMBJ01009029
[OMBJ] human gut metagenome; feces
211
296
+
Ser
GCT
[ENA]
¢þ
>WENV183424691
OMBJ01003015
[OMBJ] human gut metagenome; feces
212
137
-
Thr
CGT
[ENA]
¢þ
>WENV183424714
OMBJ01008609
[OMBJ] human gut metagenome; feces
226
135
-
Ser
GGA
[ENA]
¢þ
>WENV183424682
OMBJ01002309
[OMBJ] human gut metagenome; feces
230
302
+
Thr
TGT
[ENA]
¢þ
>WENV183424680
OMBJ01002268
[OMBJ] human gut metagenome; feces
244
170
-
Ala
GGC
[ENA]
¢þ
>WENV183424713
OMBJ01008193
[OMBJ] human gut metagenome; feces
246
322
+
Pro
CGG
[ENA]
¢þ
>WENV183424656
OMBJ01000477
[OMBJ] human gut metagenome; feces
268
339
+
Gln
TTG
[ENA]
¢þ
>WENV183424676
OMBJ01001981
[OMBJ] human gut metagenome; feces
271
346
+
Gly
GCC
[ENA]
¢þ
>WENV183424709
OMBJ01006114
[OMBJ] human gut metagenome; feces
273
348
+
fMet
CAT
[ENA]
¢þ
>WENV183424679
OMBJ01002203
[OMBJ] human gut metagenome; feces
284
357
+
Trp
CCA
[ENA]
¢þ
>WENV183424722
OMBJ01009879
[OMBJ] human gut metagenome; feces
286
199
-
Ser
CGA
[ENA]
¢þ
>WENV183424717
OMBJ01009029
[OMBJ] human gut metagenome; feces
302
377
+
Arg
ACG
[ENA]
¢þ
>WENV183424720
OMBJ01009287
[OMBJ] human gut metagenome; feces
313
388
+
Pro
GGG
[ENA]
¢þ
>WENV183424683
OMBJ01002309
[OMBJ] human gut metagenome; feces
328
402
+
fMet
CAT
[ENA]
¢þ
>WENV183424657
OMBJ01000477
[OMBJ] human gut metagenome; feces
344
416
+
Glu
TTC
[ENA]
¢þ
>WENV183424702
OMBJ01004818
[OMBJ] human gut metagenome; feces
348
272
-
fMet
CAT
[ENA]
¢þ
>WENV183424710
OMBJ01006114
[OMBJ] human gut metagenome; feces
360
434
+
Thr
TGT
[ENA]
¢þ
>WENV183424712
OMBJ01006391
[OMBJ] human gut metagenome; feces
367
291
-
Arg
CCG
[ENA]
¢þ
>WENV183424718
OMBJ01009029
[OMBJ] human gut metagenome; feces
384
472
+
Ser
TGA
[ENA]
¢þ
>WENV183424637
OMBJ01000018
[OMBJ] human gut metagenome; feces
410
486
+
Arg
CCT
[ENA]
¢þ
>WENV183424724
OMBJ01011084
[OMBJ] human gut metagenome; feces
412
339
-
Gln
CTG
[ENA]
¢þ
>WENV183424684
OMBJ01002309
[OMBJ] human gut metagenome; feces
421
494
+
Phe
GAA
[ENA]
¢þ
>WENV183424707
OMBJ01005956
[OMBJ] human gut metagenome; feces
441
365
-
Met
CAT
[ENA]
¢þ
>WENV183424704
OMBJ01005244
[OMBJ] human gut metagenome; feces
448
372
-
Ile
GAT
[ENA]
¢þ
>WENV183424689
OMBJ01002391
[OMBJ] human gut metagenome; feces
457
532
+
Ala
GGC
[ENA]
¢þ
>WENV183424693
OMBJ01003224
[OMBJ] human gut metagenome; feces
458
532
+
Asp
GTC
[ENA]
¢þ
>WENV183424706
OMBJ01005884
[OMBJ] human gut metagenome; feces
458
533
+
Lys
TTT
[ENA]
¢þ
>WENV183424659
OMBJ01000543
[OMBJ] human gut metagenome; feces
461
534
+
Phe
GAA
[ENA]
¢þ
>WENV183424701
OMBJ01004652
[OMBJ] human gut metagenome; feces
462
537
+
Thr
GGT
[ENA]
¢þ
>WENV183424719
OMBJ01009029
[OMBJ] human gut metagenome; feces
489
578
+
Ser
GCT
[ENA]
¢þ
>WENV183424685
OMBJ01002309
[OMBJ] human gut metagenome; feces
498
569
+
Gly
TCC
[ENA]
¢þ
>WENV183424700
OMBJ01004492
[OMBJ] human gut metagenome; feces
511
435
-
Ile
GAT
[ENA]
¢þ
>WENV183424698
OMBJ01004019
[OMBJ] human gut metagenome; feces
521
434
-
Leu
CAG
[ENA]
¢þ
>WENV183424658
OMBJ01000477
[OMBJ] human gut metagenome; feces
580
662
+
Tyr
GTA
[ENA]
¢þ
>WENV183424705
OMBJ01005658
[OMBJ] human gut metagenome; feces
587
662
+
His
GTG
[ENA]
¢þ
>WENV183424692
OMBJ01003148
[OMBJ] human gut metagenome; feces
590
506
-
Leu
CAA
[ENA]
¢þ
>WENV183424697
OMBJ01004019
[OMBJ] human gut metagenome; feces
610
527
-
Tyr
GTA
[ENA]
¢þ
>WENV183424703
OMBJ01005244
[OMBJ] human gut metagenome; feces
638
565
-
Gln
TTG
[ENA]
¢þ
>WENV183424686
OMBJ01002309
[OMBJ] human gut metagenome; feces
654
727
+
His
GTG
[ENA]
¢þ
>WENV183424677
OMBJ01002042
[OMBJ] human gut metagenome; feces
668
594
-
Thr
TGT
[ENA]
¢þ
>WENV183424649
OMBJ01000185
[OMBJ] human gut metagenome; feces
672
588
-
Tyr
GTA
[ENA]
¢þ
>WENV183424699
OMBJ01004089
[OMBJ] human gut metagenome; feces
676
750
+
Met
CAT
[ENA]
¢þ
>WENV183424660
OMBJ01000550
[OMBJ] human gut metagenome; feces
682
610
-
Thr
GGT
[ENA]
¢þ
>WENV183424696
OMBJ01004019
[OMBJ] human gut metagenome; feces
693
618
-
Thr
TGT
[ENA]
¢þ
>WENV183424672
OMBJ01001935
[OMBJ] human gut metagenome; feces
709
637
-
Gln
CTG
[ENA]
¢þ
>WENV183424687
OMBJ01002309
[OMBJ] human gut metagenome; feces
777
849
+
Gln
TTG
[ENA]
¢þ
>WENV183424671
OMBJ01001591
[OMBJ] human gut metagenome; feces
790
714
-
Ile
GAT
[ENA]
¢þ
>WENV183424695
OMBJ01003827
[OMBJ] human gut metagenome; feces
802
726
-
Ile
GAT
[ENA]
¢þ
>WENV183424678
OMBJ01002128
[OMBJ] human gut metagenome; feces
835
763
-
Arg
CCT
[ENA]
¢þ
>WENV183424688
OMBJ01002309
[OMBJ] human gut metagenome; feces
855
930
+
Lys
TTT
[ENA]
¢þ
>WENV183424670
OMBJ01001591
[OMBJ] human gut metagenome; feces
885
810
-
Ala
TGC
[ENA]
¢þ
>WENV183424669
OMBJ01001005
[OMBJ] human gut metagenome; feces
1016
928
-
Ser
CGA
[ENA]
¢þ
>WENV183424666
OMBJ01000847
[OMBJ] human gut metagenome; feces
1162
1237
+
Arg
CCT
[ENA]
¢þ
>WENV183424661
OMBJ01000553
[OMBJ] human gut metagenome; feces
1239
1314
+
Val
TAC
[ENA]
¢þ
>WENV183424662
OMBJ01000553
[OMBJ] human gut metagenome; feces
1318
1394
+
Asp
GTC
[ENA]
¢þ
>WENV183424665
OMBJ01000836
[OMBJ] human gut metagenome; feces
1353
1265
-
Ser
GGA
[ENA]
¢þ
>WENV183424663
OMBJ01000553
[OMBJ] human gut metagenome; feces
1402
1477
+
Phe
GAA
[ENA]
¢þ
>WENV183424664
OMBJ01000553
[OMBJ] human gut metagenome; feces
1483
1558
+
Gly
GCC
[ENA]
¢þ
>WENV183424644
OMBJ01000127
[OMBJ] human gut metagenome; feces
1506
1577
+
Gln
TTG
[ENA]
¢þ
>WENV183424648
OMBJ01000175
[OMBJ] human gut metagenome; feces
1507
1583
+
Pro
GGG
[ENA]
¢þ
>WENV183424647
OMBJ01000129
[OMBJ] human gut metagenome; feces
1703
1628
-
Asn
GTT
[ENA]
¢þ
>WENV183424646
OMBJ01000129
[OMBJ] human gut metagenome; feces
1982
1908
-
Glu
CTC
[ENA]
¢þ
>WENV183424645
OMBJ01000129
[OMBJ] human gut metagenome; feces
2113
2038
-
Lys
CTT
[ENA]
¢þ
>WENV183424640
OMBJ01000034
[OMBJ] human gut metagenome; feces
2162
2088
-
Ala
TGC
[ENA]
¢þ
>WENV183424639
OMBJ01000034
[OMBJ] human gut metagenome; feces
2253
2179
-
Ile
GAT
[ENA]
¢þ
>WENV183424651
OMBJ01000186
[OMBJ] human gut metagenome; feces
2314
2238
-
Ile
GAT
[ENA]
¢þ
>WENV183424650
OMBJ01000186
[OMBJ] human gut metagenome; feces
2425
2350
-
Ala
TGC
[ENA]
¢þ
>WENV183424642
OMBJ01000083
[OMBJ] human gut metagenome; feces
3509
3434
-
Ala
TGC
[ENA]
¢þ
>WENV183424641
OMBJ01000056
[OMBJ] human gut metagenome; feces
3774
3847
+
Lys
CTT
[ENA]
¢þ
>WENV183424638
OMBJ01000032
[OMBJ] human gut metagenome; feces
4957
5031
+
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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