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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OMCW] human gut metagenome; feces
HIT:
56 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183450075
OMCW01001018
[OMCW] human gut metagenome; feces
47
122
+
Val
TAC
[ENA]
¢þ
>WENV183450094
OMCW01001818
[OMCW] human gut metagenome; feces
53
129
+
Ile
GAT
[ENA]
¢þ
>WENV183450086
OMCW01001450
[OMCW] human gut metagenome; feces
58
130
+
Arg
CCG
[ENA]
¢þ
>WENV183450044
OMCW01000113
[OMCW] human gut metagenome; feces
89
177
+
Ser
GGA
[ENA]
¢þ
>WENV183450076
OMCW01001018
[OMCW] human gut metagenome; feces
127
203
+
Asp
GTC
[ENA]
¢þ
>WENV183450088
OMCW01001508
[OMCW] human gut metagenome; feces
139
213
+
Ile
GAT
[ENA]
¢þ
>WENV183450042
OMCW01000085
[OMCW] human gut metagenome; feces
157
70
-
Ser
CGA
[ENA]
¢þ
>WENV183450093
OMCW01001783
[OMCW] human gut metagenome; feces
182
256
+
Sup
CTA
[ENA]
¢þ
>WENV183450077
OMCW01001018
[OMCW] human gut metagenome; feces
208
283
+
Thr
GGT
[ENA]
¢þ
>WENV183450089
OMCW01001508
[OMCW] human gut metagenome; feces
231
305
+
Ala
TGC
[ENA]
¢þ
>WENV183450079
OMCW01001181
[OMCW] human gut metagenome; feces
247
323
+
Val
GAC
[ENA]
¢þ
>WENV183450064
OMCW01000615
[OMCW] human gut metagenome; feces
255
326
+
Gln
CTG
[ENA]
¢þ
>WENV183450087
OMCW01001505
[OMCW] human gut metagenome; feces
289
363
+
Glu
CTC
[ENA]
¢þ
>WENV183450082
OMCW01001248
[OMCW] human gut metagenome; feces
303
220
-
Tyr
GTA
[ENA]
¢þ
>WENV183450070
OMCW01000767
[OMCW] human gut metagenome; feces
303
231
-
Glu
CTC
[ENA]
¢þ
>WENV183450092
OMCW01001753
[OMCW] human gut metagenome; feces
368
454
+
Leu
TAA
[ENA]
¢þ
>WENV183450091
OMCW01001734
[OMCW] human gut metagenome; feces
383
308
-
Glu
CTC
[ENA]
¢þ
>WENV183450085
OMCW01001440
[OMCW] human gut metagenome; feces
436
362
-
Cys
GCA
[ENA]
¢þ
>WENV183450073
OMCW01000953
[OMCW] human gut metagenome; feces
483
407
-
Asp
GTC
[ENA]
¢þ
>WENV183450081
OMCW01001248
[OMCW] human gut metagenome; feces
494
420
-
Thr
TGT
[ENA]
¢þ
>WENV183450090
OMCW01001734
[OMCW] human gut metagenome; feces
504
429
-
Lys
CTT
[ENA]
¢þ
>WENV183450084
OMCW01001440
[OMCW] human gut metagenome; feces
555
480
-
Gly
GCC
[ENA]
¢þ
>WENV183450068
OMCW01000758
[OMCW] human gut metagenome; feces
654
729
+
Pro
TGG
[ENA]
¢þ
>WENV183450083
OMCW01001388
[OMCW] human gut metagenome; feces
727
653
-
Ile2
CAT
[ENA]
¢þ
>WENV183450067
OMCW01000649
[OMCW] human gut metagenome; feces
733
647
-
Leu
TAA
[ENA]
¢þ
>WENV183450080
OMCW01001211
[OMCW] human gut metagenome; feces
742
826
+
Tyr
GTA
[ENA]
¢þ
>WENV183450063
OMCW01000593
[OMCW] human gut metagenome; feces
784
713
-
Gln
TTG
[ENA]
¢þ
>WENV183450045
OMCW01000119
[OMCW] human gut metagenome; feces
822
899
+
Arg
TCT
[ENA]
¢þ
>WENV183450078
OMCW01001097
[OMCW] human gut metagenome; feces
941
1016
+
fMet
CAT
[ENA]
¢þ
>WENV183450066
OMCW01000649
[OMCW] human gut metagenome; feces
962
887
-
Pro
TGG
[ENA]
¢þ
>WENV183450062
OMCW01000581
[OMCW] human gut metagenome; feces
1046
973
-
Lys
TTT
[ENA]
¢þ
>WENV183450048
OMCW01000167
[OMCW] human gut metagenome; feces
1049
1121
+
Arg
CCT
[ENA]
¢þ
>WENV183450065
OMCW01000649
[OMCW] human gut metagenome; feces
1126
1052
-
Ile2
CAT
[ENA]
¢þ
>WENV183450071
OMCW01000786
[OMCW] human gut metagenome; feces
1170
1256
+
Leu
GAG
[ENA]
¢þ
>WENV183450069
OMCW01000758
[OMCW] human gut metagenome; feces
1218
1293
+
Pro
CGG
[ENA]
¢þ
>WENV183450055
OMCW01000318
[OMCW] human gut metagenome; feces
1254
1168
-
Ser
TGA
[ENA]
¢þ
>WENV183450074
OMCW01000957
[OMCW] human gut metagenome; feces
1283
1209
-
Ala
GGC
[ENA]
¢þ
>WENV183450072
OMCW01000870
[OMCW] human gut metagenome; feces
1283
1357
+
Gly
GCC
[ENA]
¢þ
>WENV183450049
OMCW01000194
[OMCW] human gut metagenome; feces
1361
1289
-
Gly
CCC
[ENA]
¢þ
>WENV183450057
OMCW01000432
[OMCW] human gut metagenome; feces
1606
1681
+
His
GTG
[ENA]
¢þ
>WENV183450052
OMCW01000294
[OMCW] human gut metagenome; feces
1638
1712
+
Ile
GAT
[ENA]
¢þ
>WENV183450053
OMCW01000294
[OMCW] human gut metagenome; feces
1722
1796
+
Ala
TGC
[ENA]
¢þ
>WENV183450040
OMCW01000012
[OMCW] human gut metagenome; feces
1777
1848
+
Cys
GCA
[ENA]
¢þ
>WENV183450060
OMCW01000573
[OMCW] human gut metagenome; feces
1802
1887
+
Ser
ACT
[ENA]
¢þ
>WENV183450059
OMCW01000488
[OMCW] human gut metagenome; feces
1830
1902
+
Glu
TTC
[ENA]
¢þ
>WENV183450050
OMCW01000237
[OMCW] human gut metagenome; feces
1989
1914
-
Pro
GGG
[ENA]
¢þ
>WENV183450043
OMCW01000091
[OMCW] human gut metagenome; feces
2115
2042
-
Thr
CGT
[ENA]
¢þ
>WENV183450061
OMCW01000573
[OMCW] human gut metagenome; feces
2210
2282
+
Gln
TTG
[ENA]
¢þ
>WENV183450056
OMCW01000396
[OMCW] human gut metagenome; feces
2245
2172
-
Phe
GAA
[ENA]
¢þ
>WENV183450054
OMCW01000305
[OMCW] human gut metagenome; feces
2404
2320
-
Leu
CAG
[ENA]
¢þ
>WENV183450058
OMCW01000433
[OMCW] human gut metagenome; feces
2490
2416
-
Met
CAT
[ENA]
¢þ
>WENV183450051
OMCW01000289
[OMCW] human gut metagenome; feces
3374
3302
-
Thr
GGT
[ENA]
¢þ
>WENV183450047
OMCW01000159
[OMCW] human gut metagenome; feces
4352
4277
-
Val
TAC
[ENA]
¢þ
>WENV183450046
OMCW01000159
[OMCW] human gut metagenome; feces
4561
4487
-
Asn
GTT
[ENA]
¢þ
>WENV183450041
OMCW01000028
[OMCW] human gut metagenome; feces
5761
5677
-
Leu
CAA
[ENA]
¢þ
>WENV183450039
OMCW01000010
[OMCW] human gut metagenome; feces
7127
7044
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK