This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OMCY] human gut metagenome; feces
HIT:
84 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183450183
OMCY01000869
[OMCY] human gut metagenome; feces
44
119
+
Val
TAC
[ENA]
¢þ
>WENV183450175
OMCY01000668
[OMCY] human gut metagenome; feces
72
146
+
Ala
TGC
[ENA]
¢þ
>WENV183450228
OMCY01007007
[OMCY] human gut metagenome; feces
81
155
+
Ile
GAT
[ENA]
¢þ
>WENV183450190
OMCY01001096
[OMCY] human gut metagenome; feces
105
29
-
fMet
CAT
[ENA]
¢þ
>WENV183450222
OMCY01006426
[OMCY] human gut metagenome; feces
107
23
-
Leu
CAG
[ENA]
¢þ
>WENV183450233
OMCY01008515
[OMCY] human gut metagenome; feces
130
204
+
Pro
GGG
[ENA]
¢þ
>WENV183450194
OMCY01001518
[OMCY] human gut metagenome; feces
134
58
-
Asp
GTC
[ENA]
¢þ
>WENV183450200
OMCY01002043
[OMCY] human gut metagenome; feces
137
213
+
Ala
TGC
[ENA]
¢þ
>WENV183450231
OMCY01007733
[OMCY] human gut metagenome; feces
186
110
-
Arg
TCT
[ENA]
¢þ
>WENV183450232
OMCY01007920
[OMCY] human gut metagenome; feces
196
121
-
Arg
CCT
[ENA]
¢þ
>WENV183450229
OMCY01007007
[OMCY] human gut metagenome; feces
197
270
+
Ala
TGC
[ENA]
¢þ
>WENV183450196
OMCY01001865
[OMCY] human gut metagenome; feces
199
273
+
His
GTG
[ENA]
¢þ
>WENV183450184
OMCY01000869
[OMCY] human gut metagenome; feces
207
280
+
Trp
CCA
[ENA]
¢þ
>WENV183450221
OMCY01006426
[OMCY] human gut metagenome; feces
219
133
-
Leu
AAG
[ENA]
¢þ
>WENV183450226
OMCY01007005
[OMCY] human gut metagenome; feces
220
293
+
Gln
TTG
[ENA]
¢þ
>WENV183450207
OMCY01003263
[OMCY] human gut metagenome; feces
232
147
-
Leu
GAG
[ENA]
¢þ
>WENV183450236
OMCY01009224
[OMCY] human gut metagenome; feces
234
160
-
Thr
TGT
[ENA]
¢þ
>WENV183450212
OMCY01003970
[OMCY] human gut metagenome; feces
236
311
+
Ile
GAT
[ENA]
¢þ
>WENV183450215
OMCY01004361
[OMCY] human gut metagenome; feces
252
338
+
Leu
CAG
[ENA]
¢þ
>WENV183450234
OMCY01008810
[OMCY] human gut metagenome; feces
258
332
+
Ala
GGC
[ENA]
¢þ
>WENV183450217
OMCY01005272
[OMCY] human gut metagenome; feces
261
355
+
Ser
GCT
[ENA]
¢þ
>WENV183450235
OMCY01008949
[OMCY] human gut metagenome; feces
282
211
-
Gln
TTG
[ENA]
¢þ
>WENV183450185
OMCY01000869
[OMCY] human gut metagenome; feces
285
356
+
Gln
TTG
[ENA]
¢þ
>WENV183450227
OMCY01007005
[OMCY] human gut metagenome; feces
309
383
+
Lys
TTT
[ENA]
¢þ
>WENV183450223
OMCY01006889
[OMCY] human gut metagenome; feces
335
423
+
Leu
TAA
[ENA]
¢þ
>WENV183450218
OMCY01006274
[OMCY] human gut metagenome; feces
341
416
+
Pro
TGG
[ENA]
¢þ
>WENV183450213
OMCY01003970
[OMCY] human gut metagenome; feces
346
420
+
Ala
TGC
[ENA]
¢þ
>WENV183450186
OMCY01000869
[OMCY] human gut metagenome; feces
361
433
+
Glu
TTC
[ENA]
¢þ
>WENV183450214
OMCY01004341
[OMCY] human gut metagenome; feces
384
310
-
fMet
CAT
[ENA]
¢þ
>WENV183450216
OMCY01005161
[OMCY] human gut metagenome; feces
417
343
-
Pro
CGG
[ENA]
¢þ
>WENV183450219
OMCY01006274
[OMCY] human gut metagenome; feces
421
492
+
Gly
TCC
[ENA]
¢þ
>WENV183450197
OMCY01001868
[OMCY] human gut metagenome; feces
422
494
+
Arg
CCT
[ENA]
¢þ
>WENV183450224
OMCY01006889
[OMCY] human gut metagenome; feces
430
503
+
Gly
TCC
[ENA]
¢þ
>WENV183450199
OMCY01002024
[OMCY] human gut metagenome; feces
454
381
-
Lys
CTT
[ENA]
¢þ
>WENV183450180
OMCY01000844
[OMCY] human gut metagenome; feces
458
383
-
Thr
GGT
[ENA]
¢þ
>WENV183450178
OMCY01000724
[OMCY] human gut metagenome; feces
474
548
+
Thr
TGT
[ENA]
¢þ
>WENV183450230
OMCY01007024
[OMCY] human gut metagenome; feces
487
414
-
Gln
CTG
[ENA]
¢þ
>WENV183450220
OMCY01006274
[OMCY] human gut metagenome; feces
497
583
+
Ser
TGA
[ENA]
¢þ
>WENV183450225
OMCY01006889
[OMCY] human gut metagenome; feces
517
592
+
Asn
GTT
[ENA]
¢þ
>WENV183450211
OMCY01003716
[OMCY] human gut metagenome; feces
560
635
+
Val
GAC
[ENA]
¢þ
>WENV183450204
OMCY01002630
[OMCY] human gut metagenome; feces
575
648
+
Pro
TGG
[ENA]
¢þ
>WENV183450187
OMCY01000869
[OMCY] human gut metagenome; feces
597
679
+
Tyr
GTA
[ENA]
¢þ
>WENV183450209
OMCY01003544
[OMCY] human gut metagenome; feces
605
680
+
Trp
CCA
[ENA]
¢þ
>WENV183450162
OMCY01000141
[OMCY] human gut metagenome; feces
649
733
+
Leu
CAA
[ENA]
¢þ
>WENV183450203
OMCY01002277
[OMCY] human gut metagenome; feces
658
583
-
Arg
CCT
[ENA]
¢þ
>WENV183450210
OMCY01003670
[OMCY] human gut metagenome; feces
666
740
+
Gly
TCC
[ENA]
¢þ
>WENV183450195
OMCY01001726
[OMCY] human gut metagenome; feces
668
743
+
Pro
GGG
[ENA]
¢þ
>WENV183450201
OMCY01002154
[OMCY] human gut metagenome; feces
708
781
+
Trp
CCA
[ENA]
¢þ
>WENV183450208
OMCY01003467
[OMCY] human gut metagenome; feces
713
784
+
Gln
TTG
[ENA]
¢þ
>WENV183450179
OMCY01000724
[OMCY] human gut metagenome; feces
734
819
+
Tyr
GTA
[ENA]
¢þ
>WENV183450193
OMCY01001452
[OMCY] human gut metagenome; feces
789
874
+
Ser
TGA
[ENA]
¢þ
>WENV183450176
OMCY01000703
[OMCY] human gut metagenome; feces
864
938
+
Ala
GGC
[ENA]
¢þ
>WENV183450206
OMCY01002920
[OMCY] human gut metagenome; feces
891
820
-
Gln
CTG
[ENA]
¢þ
>WENV183450205
OMCY01002651
[OMCY] human gut metagenome; feces
910
822
-
Ser
GGA
[ENA]
¢þ
>WENV183450177
OMCY01000707
[OMCY] human gut metagenome; feces
914
988
+
Thr
TGT
[ENA]
¢þ
>WENV183450188
OMCY01000879
[OMCY] human gut metagenome; feces
927
854
-
fMet
CAT
[ENA]
¢þ
>WENV183450160
OMCY01000124
[OMCY] human gut metagenome; feces
930
857
-
Trp
CCA
[ENA]
¢þ
>WENV183450198
OMCY01001982
[OMCY] human gut metagenome; feces
968
896
-
Arg
CCG
[ENA]
¢þ
>WENV183450202
OMCY01002212
[OMCY] human gut metagenome; feces
1003
1077
+
Ile
GAT
[ENA]
¢þ
>WENV183450170
OMCY01000428
[OMCY] human gut metagenome; feces
1098
1173
+
Lys
TTT
[ENA]
¢þ
>WENV183450189
OMCY01000957
[OMCY] human gut metagenome; feces
1241
1167
-
Asp
GTC
[ENA]
¢þ
>WENV183450172
OMCY01000512
[OMCY] human gut metagenome; feces
1314
1390
+
Val
TAC
[ENA]
¢þ
>WENV183450191
OMCY01001136
[OMCY] human gut metagenome; feces
1379
1306
-
Pro
CGG
[ENA]
¢þ
>WENV183450192
OMCY01001315
[OMCY] human gut metagenome; feces
1398
1326
-
Thr
GGT
[ENA]
¢þ
>WENV183450173
OMCY01000597
[OMCY] human gut metagenome; feces
1419
1346
-
Phe
GAA
[ENA]
¢þ
>WENV183450182
OMCY01000848
[OMCY] human gut metagenome; feces
1435
1345
-
Ser
GGA
[ENA]
¢þ
>WENV183450181
OMCY01000848
[OMCY] human gut metagenome; feces
1564
1478
-
Ser
TGA
[ENA]
¢þ
>WENV183450174
OMCY01000616
[OMCY] human gut metagenome; feces
2127
2054
-
Gly
CCC
[ENA]
¢þ
>WENV183450156
OMCY01000082
[OMCY] human gut metagenome; feces
2216
2141
-
Phe
GAA
[ENA]
¢þ
>WENV183450153
OMCY01000029
[OMCY] human gut metagenome; feces
2307
2381
+
Ile2
CAT
[ENA]
¢þ
>WENV183450171
OMCY01000505
[OMCY] human gut metagenome; feces
2469
2542
+
Thr
CGT
[ENA]
¢þ
>WENV183450169
OMCY01000254
[OMCY] human gut metagenome; feces
3171
3097
-
Lys
TTT
[ENA]
¢þ
>WENV183450167
OMCY01000210
[OMCY] human gut metagenome; feces
3604
3678
+
Asn
GTT
[ENA]
¢þ
>WENV183450159
OMCY01000093
[OMCY] human gut metagenome; feces
3860
3786
-
Glu
CTC
[ENA]
¢þ
>WENV183450168
OMCY01000228
[OMCY] human gut metagenome; feces
4009
4083
+
Thr
TGT
[ENA]
¢þ
>WENV183450161
OMCY01000140
[OMCY] human gut metagenome; feces
4175
4246
+
Gln
TTG
[ENA]
¢þ
>WENV183450166
OMCY01000194
[OMCY] human gut metagenome; feces
4259
4331
+
Arg
CCT
[ENA]
¢þ
>WENV183450158
OMCY01000093
[OMCY] human gut metagenome; feces
4301
4214
-
Ser
GCT
[ENA]
¢þ
>WENV183450163
OMCY01000178
[OMCY] human gut metagenome; feces
4301
4375
+
Arg
TCT
[ENA]
¢þ
>WENV183450164
OMCY01000181
[OMCY] human gut metagenome; feces
4310
4383
+
Gly
GCC
[ENA]
¢þ
>WENV183450165
OMCY01000181
[OMCY] human gut metagenome; feces
4424
4507
+
Leu
CAG
[ENA]
¢þ
>WENV183450157
OMCY01000093
[OMCY] human gut metagenome; feces
5056
4982
-
Cys
GCA
[ENA]
¢þ
>WENV183450155
OMCY01000080
[OMCY] human gut metagenome; feces
5157
5085
-
Glu
TTC
[ENA]
¢þ
>WENV183450154
OMCY01000047
[OMCY] human gut metagenome; feces
5704
5775
+
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK