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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OMEM] human gut metagenome; feces
HIT:
115 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183471321
OMEM01003565
[OMEM] human gut metagenome; feces
71
146
+
Lys
CTT
[ENA]
¢þ
>WENV183471291
OMEM01001602
[OMEM] human gut metagenome; feces
78
153
+
Ala
TGC
[ENA]
¢þ
>WENV183471325
OMEM01005215
[OMEM] human gut metagenome; feces
87
158
+
Cys
GCA
[ENA]
¢þ
>WENV183471324
OMEM01004951
[OMEM] human gut metagenome; feces
88
160
+
Thr
CGT
[ENA]
¢þ
>WENV183471335
OMEM01006373
[OMEM] human gut metagenome; feces
103
15
-
Ser
GCT
[ENA]
¢þ
>WENV183471275
OMEM01000517
[OMEM] human gut metagenome; feces
108
183
+
Ala
GGC
[ENA]
¢þ
>WENV183471337
OMEM01006873
[OMEM] human gut metagenome; feces
124
199
+
Ala
TGC
[ENA]
¢þ
>WENV183471322
OMEM01003973
[OMEM] human gut metagenome; feces
131
204
+
Pro
GGG
[ENA]
¢þ
>WENV183471350
OMEM01009855
[OMEM] human gut metagenome; feces
142
69
-
Lys
TTT
[ENA]
¢þ
>WENV183471308
OMEM01002197
[OMEM] human gut metagenome; feces
144
230
+
Leu
CAG
[ENA]
¢þ
>WENV183471293
OMEM01001651
[OMEM] human gut metagenome; feces
147
74
-
Thr
CGT
[ENA]
¢þ
>WENV183471311
OMEM01002937
[OMEM] human gut metagenome; feces
149
224
+
Val
TAC
[ENA]
¢þ
>WENV183471277
OMEM01000711
[OMEM] human gut metagenome; feces
158
85
-
Lys
CTT
[ENA]
¢þ
>WENV183471289
OMEM01001483
[OMEM] human gut metagenome; feces
169
95
-
Asp
GTC
[ENA]
¢þ
>WENV183471292
OMEM01001602
[OMEM] human gut metagenome; feces
171
247
+
Ile
GAT
[ENA]
¢þ
>WENV183471269
OMEM01000319
[OMEM] human gut metagenome; feces
176
250
+
Met
CAT
[ENA]
¢þ
>WENV183471327
OMEM01005475
[OMEM] human gut metagenome; feces
176
252
+
Val
CAC
[ENA]
¢þ
>WENV183471280
OMEM01000906
[OMEM] human gut metagenome; feces
182
266
+
Leu
CAA
[ENA]
¢þ
>WENV183471336
OMEM01006398
[OMEM] human gut metagenome; feces
184
275
+
Ser
CGA
[ENA]
¢þ
>WENV183471268
OMEM01000269
[OMEM] human gut metagenome; feces
204
131
-
Pro
CGG
[ENA]
¢þ
>WENV183471341
OMEM01007647
[OMEM] human gut metagenome; feces
205
279
+
Gly
TCC
[ENA]
¢þ
>WENV183471340
OMEM01007558
[OMEM] human gut metagenome; feces
209
139
-
Gly
CCC
[ENA]
¢þ
>WENV183471320
OMEM01003521
[OMEM] human gut metagenome; feces
216
130
-
Ser
CGA
[ENA]
¢þ
>WENV183471317
OMEM01003385
[OMEM] human gut metagenome; feces
221
295
+
Glu
CTC
[ENA]
¢þ
>WENV183471330
OMEM01005562
[OMEM] human gut metagenome; feces
225
135
-
Ser
CGA
[ENA]
¢þ
>WENV183471312
OMEM01002937
[OMEM] human gut metagenome; feces
230
306
+
Asp
GTC
[ENA]
¢þ
>WENV183471346
OMEM01008105
[OMEM] human gut metagenome; feces
243
167
-
Arg
ACG
[ENA]
¢þ
>WENV183471319
OMEM01003438
[OMEM] human gut metagenome; feces
245
319
+
Pro
TGG
[ENA]
¢þ
>WENV183471343
OMEM01007674
[OMEM] human gut metagenome; feces
260
185
-
fMet
CAT
[ENA]
¢þ
>WENV183471347
OMEM01008320
[OMEM] human gut metagenome; feces
262
333
+
Gly
GCC
[ENA]
¢þ
>WENV183471326
OMEM01005334
[OMEM] human gut metagenome; feces
276
204
-
Cys
GCA
[ENA]
¢þ
>WENV183471339
OMEM01007231
[OMEM] human gut metagenome; feces
300
225
-
Trp
CCA
[ENA]
¢þ
>WENV183471349
OMEM01009331
[OMEM] human gut metagenome; feces
311
228
-
Leu
TAA
[ENA]
¢þ
>WENV183471313
OMEM01002937
[OMEM] human gut metagenome; feces
313
388
+
Phe
GAA
[ENA]
¢þ
>WENV183471290
OMEM01001543
[OMEM] human gut metagenome; feces
330
255
-
Val
GAC
[ENA]
¢þ
>WENV183471318
OMEM01003385
[OMEM] human gut metagenome; feces
336
412
+
Asn
GTT
[ENA]
¢þ
>WENV183471331
OMEM01005569
[OMEM] human gut metagenome; feces
340
413
+
Gly
CCC
[ENA]
¢þ
>WENV183471345
OMEM01008105
[OMEM] human gut metagenome; feces
360
268
-
Ser
GCT
[ENA]
¢þ
>WENV183471310
OMEM01002706
[OMEM] human gut metagenome; feces
361
277
-
Leu
TAA
[ENA]
¢þ
>WENV183471342
OMEM01007674
[OMEM] human gut metagenome; feces
366
281
-
Leu
TAA
[ENA]
¢þ
>WENV183471351
OMEM01009879
[OMEM] human gut metagenome; feces
372
297
-
Gly
CCC
[ENA]
¢þ
>WENV183471344
OMEM01008043
[OMEM] human gut metagenome; feces
375
451
+
Arg
ACG
[ENA]
¢þ
>WENV183471348
OMEM01008673
[OMEM] human gut metagenome; feces
392
466
+
Lys
CTT
[ENA]
¢þ
>WENV183471314
OMEM01002937
[OMEM] human gut metagenome; feces
392
467
+
Gly
GCC
[ENA]
¢þ
>WENV183471333
OMEM01005729
[OMEM] human gut metagenome; feces
442
367
-
Trp
CCA
[ENA]
¢þ
>WENV183471338
OMEM01007116
[OMEM] human gut metagenome; feces
446
374
-
Glu
TTC
[ENA]
¢þ
>WENV183471309
OMEM01002706
[OMEM] human gut metagenome; feces
454
381
-
Gly
GCC
[ENA]
¢þ
>WENV183471302
OMEM01001980
[OMEM] human gut metagenome; feces
475
404
-
Cys
GCA
[ENA]
¢þ
>WENV183471329
OMEM01005555
[OMEM] human gut metagenome; feces
478
388
-
Ser
GGA
[ENA]
¢þ
>WENV183471281
OMEM01000992
[OMEM] human gut metagenome; feces
496
423
-
Lys
TTT
[ENA]
¢þ
>WENV183471315
OMEM01002937
[OMEM] human gut metagenome; feces
497
573
+
Asp
GTC
[ENA]
¢þ
>WENV183471295
OMEM01001919
[OMEM] human gut metagenome; feces
503
577
+
fMet
CAT
[ENA]
¢þ
>WENV183471334
OMEM01006090
[OMEM] human gut metagenome; feces
513
585
+
Glu
CTC
[ENA]
¢þ
>WENV183471332
OMEM01005704
[OMEM] human gut metagenome; feces
553
479
-
Met
CAT
[ENA]
¢þ
>WENV183471316
OMEM01002937
[OMEM] human gut metagenome; feces
577
652
+
Thr
GGT
[ENA]
¢þ
>WENV183471328
OMEM01005555
[OMEM] human gut metagenome; feces
593
507
-
Ser
TGA
[ENA]
¢þ
>WENV183471323
OMEM01004753
[OMEM] human gut metagenome; feces
593
517
-
Met
CAT
[ENA]
¢þ
>WENV183471296
OMEM01001919
[OMEM] human gut metagenome; feces
608
682
+
Phe
GAA
[ENA]
¢þ
>WENV183471287
OMEM01001185
[OMEM] human gut metagenome; feces
668
593
-
Arg
ACG
[ENA]
¢þ
>WENV183471297
OMEM01001919
[OMEM] human gut metagenome; feces
735
805
+
Gly
TCC
[ENA]
¢þ
>WENV183471257
OMEM01000136
[OMEM] human gut metagenome; feces
744
819
+
Val
TAC
[ENA]
¢þ
>WENV183471267
OMEM01000269
[OMEM] human gut metagenome; feces
745
818
+
Phe
GAA
[ENA]
¢þ
>WENV183471286
OMEM01001185
[OMEM] human gut metagenome; feces
786
701
-
Leu
TAA
[ENA]
¢þ
>WENV183471262
OMEM01000183
[OMEM] human gut metagenome; feces
795
879
+
Leu
CAA
[ENA]
¢þ
>WENV183471298
OMEM01001919
[OMEM] human gut metagenome; feces
809
884
+
Arg
TCT
[ENA]
¢þ
>WENV183471305
OMEM01002122
[OMEM] human gut metagenome; feces
833
759
-
Ala
TGC
[ENA]
¢þ
>WENV183471285
OMEM01001185
[OMEM] human gut metagenome; feces
881
807
-
Val
TAC
[ENA]
¢þ
>WENV183471307
OMEM01002182
[OMEM] human gut metagenome; feces
896
822
-
Ala
TGC
[ENA]
¢þ
>WENV183471299
OMEM01001919
[OMEM] human gut metagenome; feces
924
999
+
His
GTG
[ENA]
¢þ
>WENV183471282
OMEM01001087
[OMEM] human gut metagenome; feces
945
872
-
Trp
CCA
[ENA]
¢þ
>WENV183471303
OMEM01001993
[OMEM] human gut metagenome; feces
959
886
-
Trp
CCA
[ENA]
¢þ
>WENV183471284
OMEM01001185
[OMEM] human gut metagenome; feces
997
924
-
Asp
GTC
[ENA]
¢þ
>WENV183471306
OMEM01002182
[OMEM] human gut metagenome; feces
1006
931
-
Ile
GAT
[ENA]
¢þ
>WENV183471304
OMEM01002122
[OMEM] human gut metagenome; feces
1008
934
-
Ile
GAT
[ENA]
¢þ
>WENV183471265
OMEM01000238
[OMEM] human gut metagenome; feces
1046
1118
+
Arg
CCT
[ENA]
¢þ
>WENV183471300
OMEM01001919
[OMEM] human gut metagenome; feces
1068
1140
+
Gln
TTG
[ENA]
¢þ
>WENV183471274
OMEM01000466
[OMEM] human gut metagenome; feces
1141
1067
-
Thr
TGT
[ENA]
¢þ
>WENV183471301
OMEM01001919
[OMEM] human gut metagenome; feces
1156
1229
+
Lys
TTT
[ENA]
¢þ
>WENV183471279
OMEM01000785
[OMEM] human gut metagenome; feces
1167
1238
+
Gln
TTG
[ENA]
¢þ
>WENV183471273
OMEM01000466
[OMEM] human gut metagenome; feces
1219
1146
-
His
GTG
[ENA]
¢þ
>WENV183471294
OMEM01001779
[OMEM] human gut metagenome; feces
1263
1177
-
Leu
TAA
[ENA]
¢þ
>WENV183471288
OMEM01001208
[OMEM] human gut metagenome; feces
1325
1400
+
Glu
TTC
[ENA]
¢þ
>WENV183471272
OMEM01000466
[OMEM] human gut metagenome; feces
1539
1464
-
Arg
ACG
[ENA]
¢þ
>WENV183471283
OMEM01001132
[OMEM] human gut metagenome; feces
1552
1623
+
Gln
TTG
[ENA]
¢þ
>WENV183471238
OMEM01000009
[OMEM] human gut metagenome; feces
1613
1537
-
Asp
GTC
[ENA]
¢þ
>WENV183471264
OMEM01000235
[OMEM] human gut metagenome; feces
1665
1577
-
Ser
GGA
[ENA]
¢þ
>WENV183471254
OMEM01000115
[OMEM] human gut metagenome; feces
1914
1985
+
Gln
CTG
[ENA]
¢þ
>WENV183471278
OMEM01000752
[OMEM] human gut metagenome; feces
2220
2147
-
Ala
TGC
[ENA]
¢þ
>WENV183471263
OMEM01000234
[OMEM] human gut metagenome; feces
2572
2490
-
Tyr
GTA
[ENA]
¢þ
>WENV183471255
OMEM01000120
[OMEM] human gut metagenome; feces
2647
2563
-
Leu
TAG
[ENA]
¢þ
>WENV183471276
OMEM01000529
[OMEM] human gut metagenome; feces
3174
3099
-
Arg
TCT
[ENA]
¢þ
>WENV183471270
OMEM01000321
[OMEM] human gut metagenome; feces
3199
3124
-
His
GTG
[ENA]
¢þ
>WENV183471251
OMEM01000071
[OMEM] human gut metagenome; feces
3572
3497
-
Val
TAC
[ENA]
¢þ
>WENV183471271
OMEM01000400
[OMEM] human gut metagenome; feces
4044
4115
+
Gln
CTG
[ENA]
¢þ
>WENV183471266
OMEM01000251
[OMEM] human gut metagenome; feces
5172
5245
+
fMet
CAT
[ENA]
¢þ
>WENV183471242
OMEM01000033
[OMEM] human gut metagenome; feces
5262
5335
+
Phe
GAA
[ENA]
¢þ
>WENV183471256
OMEM01000133
[OMEM] human gut metagenome; feces
5434
5508
+
Ile2
CAT
[ENA]
¢þ
>WENV183471261
OMEM01000168
[OMEM] human gut metagenome; feces
6033
6107
+
Ile2
CAT
[ENA]
¢þ
>WENV183471258
OMEM01000153
[OMEM] human gut metagenome; feces
6356
6427
+
Cys
GCA
[ENA]
¢þ
>WENV183471237
OMEM01000003
[OMEM] human gut metagenome; feces
6577
6649
+
Glu
TTC
[ENA]
¢þ
>WENV183471259
OMEM01000153
[OMEM] human gut metagenome; feces
7848
7935
+
Ser
GCT
[ENA]
¢þ
>WENV183471260
OMEM01000153
[OMEM] human gut metagenome; feces
7963
8037
+
Glu
CTC
[ENA]
¢þ
>WENV183471243
OMEM01000033
[OMEM] human gut metagenome; feces
8898
8983
+
Ser
TGA
[ENA]
¢þ
>WENV183471252
OMEM01000075
[OMEM] human gut metagenome; feces
9077
9005
-
Arg
CCT
[ENA]
¢þ
>WENV183471253
OMEM01000077
[OMEM] human gut metagenome; feces
9501
9583
+
Leu
CAA
[ENA]
¢þ
>WENV183471249
OMEM01000063
[OMEM] human gut metagenome; feces
10001
10084
+
Leu
TAG
[ENA]
¢þ
>WENV183471246
OMEM01000049
[OMEM] human gut metagenome; feces
10225
10300
+
Pro
TGG
[ENA]
¢þ
>WENV183471250
OMEM01000066
[OMEM] human gut metagenome; feces
10691
10765
+
Asn
GTT
[ENA]
¢þ
>WENV183471247
OMEM01000052
[OMEM] human gut metagenome; feces
11845
11927
+
Tyr
GTA
[ENA]
¢þ
>WENV183471248
OMEM01000052
[OMEM] human gut metagenome; feces
12022
12094
+
Thr
GGT
[ENA]
¢þ
>WENV183471245
OMEM01000043
[OMEM] human gut metagenome; feces
12035
12120
+
Ser
TGA
[ENA]
¢þ
>WENV183471241
OMEM01000022
[OMEM] human gut metagenome; feces
14120
14046
-
Met
CAT
[ENA]
¢þ
>WENV183471244
OMEM01000033
[OMEM] human gut metagenome; feces
14491
14565
+
Thr
TGT
[ENA]
¢þ
>WENV183471240
OMEM01000014
[OMEM] human gut metagenome; feces
17395
17468
+
Gly
GCC
[ENA]
¢þ
>WENV183471239
OMEM01000011
[OMEM] human gut metagenome; feces
18771
18696
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK