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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OMFE] human gut metagenome; feces
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183478826
OMFE01000912
[OMFE] human gut metagenome; feces
66
140
+
Pro
TGG
[ENA]
¢þ
>WENV183478823
OMFE01000483
[OMFE] human gut metagenome; feces
94
169
+
Val
TAC
[ENA]
¢þ
>WENV183478824
OMFE01000759
[OMFE] human gut metagenome; feces
150
225
+
His
GTG
[ENA]
¢þ
>WENV183478820
OMFE01000358
[OMFE] human gut metagenome; feces
217
291
+
Asn
GTT
[ENA]
¢þ
>WENV183478827
OMFE01000932
[OMFE] human gut metagenome; feces
283
356
+
Lys
CTT
[ENA]
¢þ
>WENV183478821
OMFE01000396
[OMFE] human gut metagenome; feces
317
399
+
Leu
CAA
[ENA]
¢þ
>WENV183478819
OMFE01000314
[OMFE] human gut metagenome; feces
323
396
+
Gly
GCC
[ENA]
¢þ
>WENV183478808
OMFE01000007
[OMFE] human gut metagenome; feces
381
307
-
Ala
TGC
[ENA]
¢þ
>WENV183478825
OMFE01000899
[OMFE] human gut metagenome; feces
411
487
+
Ile2
CAT
[ENA]
¢þ
>WENV183478822
OMFE01000435
[OMFE] human gut metagenome; feces
412
340
-
Arg
CCT
[ENA]
¢þ
>WENV183478815
OMFE01000197
[OMFE] human gut metagenome; feces
413
487
+
Ile2
CAT
[ENA]
¢þ
>WENV183478816
OMFE01000259
[OMFE] human gut metagenome; feces
476
551
+
Ile
GAT
[ENA]
¢þ
>WENV183478807
OMFE01000007
[OMFE] human gut metagenome; feces
493
419
-
Ile
GAT
[ENA]
¢þ
>WENV183478817
OMFE01000259
[OMFE] human gut metagenome; feces
558
633
+
Ala
TGC
[ENA]
¢þ
>WENV183478818
OMFE01000259
[OMFE] human gut metagenome; feces
637
713
+
Ile
GAT
[ENA]
¢þ
>WENV183478814
OMFE01000061
[OMFE] human gut metagenome; feces
748
676
-
Thr
GGT
[ENA]
¢þ
>WENV183478813
OMFE01000061
[OMFE] human gut metagenome; feces
943
860
-
Tyr
GTA
[ENA]
¢þ
>WENV183478809
OMFE01000042
[OMFE] human gut metagenome; feces
1029
1104
+
Asp
GTC
[ENA]
¢þ
>WENV183478812
OMFE01000061
[OMFE] human gut metagenome; feces
1095
1021
-
Thr
TGT
[ENA]
¢þ
>WENV183478810
OMFE01000042
[OMFE] human gut metagenome; feces
1113
1188
+
Val
TAC
[ENA]
¢þ
>WENV183478811
OMFE01000042
[OMFE] human gut metagenome; feces
1193
1269
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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